MD11G1284900.v1.1

Mitochondrial ribosome-associated GTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015926
Physical Location & Seq
Forward (+)
40337783 .. 40341401
3619 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1284900.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGCCATGGCTATTCAAGTAGCAGGCCTCCGGCTGCCCAACTCCTCCTCCTCAACCCACACTCACTTTCTTCTCTGCCGGAACAACAATCTGAAACCACCGCCATCCTCCACCTCTCTCTCCGCCACGGCTTCTCTCTCATCCCCACCTCCCTCAATCCAGATTATTGGTGGCGGGAGAGCTCCGAGCTGGTACGAAAATGGAGGTGCCAATCTGGATGGGTTCCAAGAGAGGGATGATGATGACTGGTGTGACCTGGATGCTGAACTTTATCACTGGACCAGGCAACTGCGTCCTGTTCAGTGGTACCCAGGTCACATTGCTAAAACGGAAAAGGAACTCAAAAACCAACTCAAGTTGATGGATGTAGTGATAGAGGTTCGAGATGCGAGAATTCCTATGTCAACTAGTCATCCACAGATGGATCTGTGGCTTGGTAATAGGAAAAGAGTTTTGGTGTTGAATAGGGAAGACATGATATCCACGGCAGACCGGAATGCTTGGGCTACCTATTTCGCAAGGGAGGGAACGAAAGTTGTGTTTTCAAATGGAAAACTTGGAATGGGAGCTATGAAGTTAGGCCGGTTAGCTAGATCACTAGCAGCAGATGTGAATGTCAAACGCAGAGCCAAAGGACTTCTTCCACGTGCGGTACGAGCTGGTATAGTTGGATATCCAAATGTTGGGAAATCGTCTTTGATTAACCGTTTGCTGAAGCGAAGAATGTGCGCAGCTGCTCCAAGACCTGGAGTGACAAGAGAATTGAAGTGGGTTCATTTTGGGAAAGATCTTGAATTGCTAGACTCTCCTGGCATACTCCCTATGCGGATTAGTGATCAAACAGCAGCAATAAAACTTGCTATTTGTGATGACATTGGAGAGAGATCCTACGGTGTTGCTGATATTGCTGCAGTACTGGTCCAGATGCTTTCAAAGCTTCCATCAGTAGGTGTAAAGGCTCTTAACAACCGCTACAAGATGGATGCTGATGGTCACTGTGGAAAAACATATGTTCAGAAGCTTGCCGTTCACATGTTCAATGGGGATAGTCATCAAGCAGCATTTCGTGTGTTGTCAGATTTTCGGAAAGGGAGGTTTGGTTGGATCGCGCTCGAGAGGCCTCCCAGATGA

Protein Analysis

377

Amino Acids

41.7

Weight (kDa)

9.9

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 220 - 274 1.6e-15 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02790
fragaria_vesca FvH4_2g23540
malus_domestica MD11G1284900.v1.1
prunus_persica Prupe.8G071100_v2.0.a1 Prupe.8G071100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291011
rosa_laevigata RLG00000012155
rosa_multiflora Rmu_sc0041551.1_g000001
rosa_roxburghii Rroxscaffold_7G00176460
rosa_rugosa Rorug06G0217000
rosa_samantha Rh6AG326900 Rh6BG334400 Rh6CG340600 Rh6DG327900
rosa_wichuraiana Rw6G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 730
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 2 cut(s) 206, 306
AccB7I CCANNNNNTGG 2 cut(s) 683, 746
AccII CGCG 1 cut(s) 1109
AciI CCGC 6 cut(s) 101, 123, 174, 650, 826, 970
AclWI GGATC 3 cut(s) 432, 879, 1112
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 734
AcvI CACGTG 1 cut(s) 647
AfaI GTAC 4 cut(s) 194, 308, 654, 915
AfiI CCNNNNNNNGG 4 cut(s) 232, 683, 746, 947
AflIII ACRYGT 1 cut(s) 1032
AgsI TTSAA 7 cut(s) 17, 463, 546, 766, 794, 933, 1039
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 5 cut(s) 255, 281, 310, 745, 808
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 8 cut(s) 182, 189, 569, 590, 659, 734, 937, 1021
AluI AGCT 8 cut(s) 182, 189, 569, 590, 659, 734, 937, 1021
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 3 cut(s) 432, 879, 1112
Ama87I CYCGRG 1 cut(s) 1112
AoxI GGCC 4 cut(s) 3, 25, 580, 1118
ApeKI GCWGC 7 cut(s) 34, 602, 731, 734, 845, 908, 1058
ApoI RAATTY 1 cut(s) 393
Asp718I GGTACC 1 cut(s) 306
AspLEI GCGC 2 cut(s) 731, 1111
AspS9I GGNCC 2 cut(s) 279, 919
AvaI CYCGRG 1 cut(s) 1112
AvaII GGWCC 2 cut(s) 279, 919
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 206, 306
BanII GRGCYC 1 cut(s) 184
BbrPI CACGTG 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 7 cut(s) 21, 614, 721, 743, 857, 895, 1070
BccI CCATC 7 cut(s) 112, 212, 355, 415, 949, 973, 983
BceAI ACGGC 3 cut(s) 144, 501, 1010
BcgI CGANNNNNNTGC 2 cut(s) 708, 742
BciT130I CCWGG 5 cut(s) 257, 283, 312, 747, 810
BclI TGATCA 1 cut(s) 835
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 4 cut(s) 408, 591, 599, 800
BfmI CTRYAG 1 cut(s) 909
BglII AGATCT 1 cut(s) 787
BisI GCNGC 7 cut(s) 35, 603, 732, 735, 846, 909, 1059
BlsI GCNGC 7 cut(s) 36, 604, 733, 736, 847, 910, 1060
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 5 cut(s) 257, 283, 312, 747, 810
Bme18I GGWCC 2 cut(s) 279, 919
BmeT110I CYCGRG 1 cut(s) 1112
BmgT120I GGNCC 2 cut(s) 279, 919
BmiI GGNNCC 3 cut(s) 208, 224, 308
BmrFI CCNGG 5 cut(s) 257, 283, 312, 747, 810
BmsI GCATC 4 cut(s) 250, 376, 915, 973
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 1050
BsaJI CCNNGG 4 cut(s) 6, 126, 310, 483
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 1084, 1114
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 683, 746, 947
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 3 cut(s) 251, 281, 921
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 1050
BseBI CCWGG 5 cut(s) 257, 283, 312, 747, 810
BseDI CCNNGG 4 cut(s) 6, 126, 310, 483
BseGI GGATG 8 cut(s) 104, 140, 223, 241, 265, 370, 412, 988
BseJI GATNNNNATC 1 cut(s) 1050
BseLI CCNNNNNNNGG 4 cut(s) 232, 683, 746, 947
BseMI GCAATG 1 cut(s) 318
BseNI ACTGG 3 cut(s) 251, 281, 921
BseRI GAGGAG 3 cut(s) 34, 37, 40
BseXI GCAGC 7 cut(s) 21, 614, 721, 743, 857, 895, 1070
Bsh1236I CGCG 1 cut(s) 1109
BshFI GGCC 4 cut(s) 5, 27, 582, 1120
BshNI GGYRCC 2 cut(s) 206, 306
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 1112
BsiSI CCGG 4 cut(s) 31, 79, 493, 583
BslI CCNNNNNNNGG 4 cut(s) 232, 683, 746, 947
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 4 cut(s) 5, 27, 582, 1120
BsoBI CYCGRG 1 cut(s) 1112
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 6 cut(s) 101, 123, 174, 650, 826, 970
BspANI GGCC 4 cut(s) 5, 27, 582, 1120
BspFNI CGCG 1 cut(s) 1109
BspLI GGNNCC 3 cut(s) 208, 224, 308
BspMAI CTGCAG 1 cut(s) 913
BspPI GGATC 3 cut(s) 432, 879, 1112
BspT107I GGYRCC 2 cut(s) 206, 306
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 3 cut(s) 251, 281, 921
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 4 cut(s) 6, 126, 310, 483
BssMI GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 5 cut(s) 257, 283, 312, 747, 810
Bst4CI ACNGT 3 cut(s) 707, 893, 998
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 25, 1023
BstDSI CCRYGG 3 cut(s) 6, 126, 483
BstF5I GGATG 8 cut(s) 104, 140, 223, 241, 265, 370, 412, 988
BstFNI CGCG 1 cut(s) 1109
BstHHI GCGC 2 cut(s) 731, 1111
BstKTI GATC 6 cut(s) 427, 596, 790, 838, 887, 1107
BstMBI GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
BstMWI GCNNNNNNNGC 4 cut(s) 656, 905, 934, 1117
BstNI CCWGG 5 cut(s) 257, 283, 312, 747, 810
BstNSI RCATGY 1 cut(s) 1036
BstSCI CCNGG 5 cut(s) 255, 281, 310, 745, 808
BstSFI CTRYAG 1 cut(s) 909
BstUI CGCG 1 cut(s) 1109
BstV1I GCAGC 7 cut(s) 21, 614, 721, 743, 857, 895, 1070
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 3 cut(s) 424, 787, 884
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 3 cut(s) 424, 787, 884
BsuRI GGCC 4 cut(s) 5, 27, 582, 1120
BtgI CCRYGG 3 cut(s) 6, 126, 483
BtsCI GGATG 8 cut(s) 104, 140, 223, 241, 265, 370, 412, 988
BtsIMutI CAGTG 3 cut(s) 274, 308, 994
Cac8I GCNNGC 2 cut(s) 25, 1023
CfoI GCGC 2 cut(s) 731, 1111
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 279, 919
CseI GACGC 1 cut(s) 281
Csp6I GTAC 4 cut(s) 193, 307, 653, 914
CviAII CATG 3 cut(s) 7, 475, 1033
CviQI GTAC 4 cut(s) 193, 307, 653, 914
DpnI GATC 6 cut(s) 426, 595, 789, 837, 886, 1106
DpnII GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 6
Eco147I AGGCCT 2 cut(s) 27, 1120
Eco24I GRGCYC 1 cut(s) 184
Eco32I GATATC 2 cut(s) 480, 674
Eco47I GGWCC 2 cut(s) 279, 919
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 734
Eco72I CACGTG 1 cut(s) 647
Eco88I CYCGRG 1 cut(s) 1112
EcoICRI GAGCTC 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 5 cut(s) 255, 281, 310, 745, 808
EcoRV GATATC 2 cut(s) 480, 674
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 10, 478, 1036
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 3 cut(s) 6, 474, 1032
FauI CCCGC 1 cut(s) 167
FauNDI CATATG 1 cut(s) 1009
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 7 cut(s) 35, 603, 732, 735, 846, 909, 1059
FokI GGATG 8 cut(s) 91, 127, 230, 248, 272, 377, 399, 995
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 7 cut(s) 35, 603, 732, 735, 846, 909, 1059
FspBI CTAG 4 cut(s) 408, 591, 599, 800
FspI TGCGCA 1 cut(s) 730
GlaI GCGC 2 cut(s) 730, 1110
GluI GCNGC 7 cut(s) 35, 603, 732, 735, 846, 909, 1059
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 4 cut(s) 5, 27, 582, 1120
HapII CCGG 4 cut(s) 31, 79, 493, 583
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 731, 1111
Hin1II CATG 3 cut(s) 10, 478, 1036
Hin6I GCGC 2 cut(s) 729, 1109
HinP1I GCGC 2 cut(s) 729, 1109
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 935, 1019
HinfI GANTC 1 cut(s) 803
HpaII CCGG 4 cut(s) 31, 79, 493, 583
Hpy166II GTNNAC 2 cut(s) 405, 1030
Hpy188I TCNGA 5 cut(s) 93, 186, 1017, 1078, 1086
Hpy188III TCNNGA 6 cut(s) 160, 215, 383, 791, 922, 1114
Hpy8I GTNNAC 2 cut(s) 405, 1030
HpyCH4III ACNGT 3 cut(s) 707, 893, 998
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 1 cut(s) 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 656, 905, 934, 1117
HpySE526I ACGT 1 cut(s) 646
Hsp92II CATG 3 cut(s) 10, 478, 1036
HspAI GCGC 2 cut(s) 729, 1109
KpnI GGTACC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
LmnI GCTCC 3 cut(s) 187, 566, 742
Lsp1109I GCAGC 7 cut(s) 21, 614, 721, 743, 857, 895, 1070
LweI GCATC 4 cut(s) 250, 376, 915, 973
MaeI CTAG 4 cut(s) 408, 591, 599, 800
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 4 cut(s) 251, 314, 751, 992
MalI GATC 6 cut(s) 426, 595, 789, 837, 886, 1106
MboI GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
MboII GAAGA 4 cut(s) 62, 482, 632, 732
MflI RGATCY 3 cut(s) 424, 787, 884
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 393, 761, 794
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 649, 1082
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 702, 963
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 4 cut(s) 31, 79, 493, 583
MspR9I CCNGG 5 cut(s) 257, 283, 312, 747, 810
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 5 cut(s) 257, 283, 312, 747, 810
MvnI CGCG 1 cut(s) 1109
MwoI GCNNNNNNNGC 4 cut(s) 656, 905, 934, 1117
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 1009
NdeII GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
NlaIII CATG 3 cut(s) 10, 478, 1036
NlaIV GGNNCC 3 cut(s) 208, 224, 308
NmuCI GTSAC 4 cut(s) 251, 314, 751, 992
NsbI TGCGCA 1 cut(s) 730
NspI RCATGY 1 cut(s) 1036
PaeR7I CTCGAG 1 cut(s) 1112
PceI AGGCCT 2 cut(s) 27, 1120
PciI ACATGT 1 cut(s) 1032
PcsI WCGNNNNNNNCGW 1 cut(s) 652
PctI GAATGC 1 cut(s) 502
PflMI CCANNNNNTGG 2 cut(s) 683, 746
PkrI GCNGC 7 cut(s) 36, 604, 733, 736, 847, 910, 1060
PleI GAGTC 1 cut(s) 797
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 1 cut(s) 797
Ppu21I YACGTR 1 cut(s) 647
PscI ACATGT 1 cut(s) 1032
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 5 cut(s) 255, 281, 310, 745, 808
PspCI CACGTG 1 cut(s) 647
PspGI CCWGG 5 cut(s) 255, 281, 310, 745, 808
PspN4I GGNNCC 3 cut(s) 208, 224, 308
PspPI GGNCC 2 cut(s) 279, 919
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 3 cut(s) 424, 787, 884
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 4 cut(s) 194, 308, 654, 915
RsaNI GTAC 4 cut(s) 193, 307, 653, 914
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 702, 963
SatI GCNGC 7 cut(s) 35, 603, 732, 735, 846, 909, 1059
Sau3AI GATC 6 cut(s) 424, 593, 787, 835, 884, 1104
Sau96I GGNCC 2 cut(s) 279, 919
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 5 cut(s) 257, 283, 312, 747, 810
SduI GDGCHC 1 cut(s) 184
SfaNI GCATC 4 cut(s) 250, 376, 915, 973
SfcI CTRYAG 1 cut(s) 909
Sfr274I CTCGAG 1 cut(s) 1112
SinI GGWCC 2 cut(s) 279, 919
SlaI CTCGAG 1 cut(s) 1112
SmlI CTYRAG 2 cut(s) 353, 1112
SmoI CTYRAG 2 cut(s) 353, 1112
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 3 cut(s) 393, 761, 794
SseBI AGGCCT 2 cut(s) 27, 1120
SsiI CCGC 6 cut(s) 101, 123, 174, 650, 826, 970
SspMI CTAG 4 cut(s) 408, 591, 599, 800
SstI GAGCTC 1 cut(s) 184
StuI AGGCCT 2 cut(s) 27, 1120
StyD4I CCNGG 5 cut(s) 255, 281, 310, 745, 808
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 707, 893, 998
TaiI ACGT 1 cut(s) 649
TaqI TCGA 2 cut(s) 382, 1113
TasI AATT 3 cut(s) 393, 761, 794
TatI WGTACW 1 cut(s) 913
Tru1I TTAA 2 cut(s) 702, 963
Tru9I TTAA 2 cut(s) 702, 963
TscAI CASTG 3 cut(s) 281, 308, 1001
TseFI GTSAC 4 cut(s) 251, 314, 751, 992
TseI GCWGC 7 cut(s) 34, 602, 731, 734, 845, 908, 1058
Tsp45I GTSAC 4 cut(s) 251, 314, 751, 992
TspDTI ATGAA 2 cut(s) 587, 764
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 3 cut(s) 281, 308, 1001
Van91I CCANNNNNTGG 2 cut(s) 683, 746
VpaK11BI GGWCC 2 cut(s) 279, 919
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 1112
XspI CTAG 4 cut(s) 408, 591, 599, 800
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.