Prupe.8G071100_v2.0.a1

Mitochondrial ribosome-associated GTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015926
Physical Location & Seq
Reverse (-)
10384842 .. 10388320
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G071100.1

Sequence Viewer

Length: 1131 bp
ATGGCCATGGCTGTTCAAGTGGCAGGCCTCTGGCTGCCCACCTCTTCAACAGCCCACACTCACTTTCTTCATTGCAGAAGCAATCTAAAACCACCATCTTCTACAGCTCTCTCTGCTACAGCTTCTCTCTCATCCCCACCTCCCACTATCCAGATTGTTGGTGGTGGGAGAAGTCCCAGTTGGTACGAAAATGGAAATGGAAATCTCGATGGTTTCCAAGGAGAGGATGATGATTGGTGTGATTTGGACACTGAACTTTATCACTGGACCAAGCAACTGCGTCCTGTTCAGTGGTACCCTGGTCATATTGCTAAAACGGAAAAGGAACTCAAAAACCAACTCAAGTTGATGGATGTAGTGATAGAGGTTCGAGATGCAAGAATTCCTATGTCAACTAGTCATCCACAGATGGATTTATGGCTTGGTAATAGGAAAAGAGTTTTGGTGTTGAATAGAGAAGACATGATATCCACGGCAGACCGGAATGCTTGGGCCACTTATTTTGCAAGGGAGGGAACGAAGGTTGTCTTTTCCAATGGCAAACTTGGAATGGGTGCCATGAAGCTAGGCCGGTTAGCTAGAGCATTAGCAGCAGATGTGAATGTCAAACGCAGAGCCAAAGGACTTCTCCCACGTGCGGTACGAGCTGGTATAGTTGGATATCCAAATGTTGGGAAATCATCTTTGATTAACCGTTTGCTGAAGCGACGAATGTGTGCAGCAGCTCCAAGACCTGGAGTTACAAGAGAATTGAAGTGGGTTCATTTTGGGAAAGATCTTGAATTGCTAGACTCTCCTGGTATTCTCCCAATGCGGATTAGTGATCAGACAGCAGCAATTAAGCTTGCTATTTGTGATGACATTGGAGAGAGATCCTATGGTGTTGCTGATATTGCTGCAGTTCTTGTCCAGATGCTAACGAGGCTTCCATCAGTAGGTGTAAAGGCTCTTAACAGCCGCTACAAGATGGATGTGGATGGTCACTGTGGTAAAACAAGCTTGCGGTTCACATGTTTAATGGGGATAGTCATCAAGCAGCATTTCGAGTGTTGTCGGATTTTCGGAAAGGGAAGTTTGGTTGGATTGCACTGGAGAGGCCTCCCAGATAGTACTATTGGAACTTGGTGGTAG

Protein Analysis

377

Amino Acids

41.6

Weight (kDa)

9.67

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02790
fragaria_vesca FvH4_2g23540
malus_domestica MD11G1284900.v1.1
prunus_persica Prupe.8G071100_v2.0.a1 Prupe.8G071100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291011
rosa_laevigata RLG00000012155
rosa_multiflora Rmu_sc0041551.1_g000001
rosa_roxburghii Rroxscaffold_7G00176460
rosa_rugosa Rorug06G0217000
rosa_samantha Rh6AG326900 Rh6BG334400 Rh6CG340600 Rh6DG327900
rosa_wichuraiana Rw6G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 2 cut(s) 294, 554
AccB7I CCANNNNNTGG 2 cut(s) 671, 734
AciI CCGC 4 cut(s) 638, 814, 958, 1003
AclWI GGATC 1 cut(s) 867
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 722
AcvI CACGTG 1 cut(s) 635
AfaI GTAC 4 cut(s) 185, 296, 642, 1111
AfiI CCNNNNNNNGG 5 cut(s) 223, 637, 671, 734, 935
AflIII ACRYGT 1 cut(s) 1010
AgsI TTSAA 5 cut(s) 17, 48, 451, 754, 782
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 3 cut(s) 298, 733, 796
AjuI GAANNNNNNNTTGG 4 cut(s) 163, 195, 425, 457
AluBI AGCT 8 cut(s) 107, 122, 565, 578, 647, 725, 844, 999
AluI AGCT 8 cut(s) 107, 122, 565, 578, 647, 725, 844, 999
AlwI GGATC 1 cut(s) 867
AoxI GGCC 5 cut(s) 3, 25, 492, 568, 1096
ApeKI GCWGC 7 cut(s) 34, 590, 719, 722, 833, 896, 1036
ApoI RAATTY 1 cut(s) 381
Asp718I GGTACC 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 267, 492
AvaII GGWCC 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 294, 554
BbrPI CACGTG 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 7 cut(s) 21, 602, 731, 734, 845, 883, 1048
BccI CCATC 7 cut(s) 103, 203, 343, 403, 937, 961, 971
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 3 cut(s) 300, 735, 798
BclI TGATCA 1 cut(s) 823
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 4 cut(s) 396, 566, 579, 788
BfmI CTRYAG 3 cut(s) 102, 117, 897
BglII AGATCT 1 cut(s) 775
BisI GCNGC 8 cut(s) 35, 591, 720, 723, 834, 897, 958, 1037
BlsI GCNGC 8 cut(s) 36, 592, 721, 724, 835, 898, 959, 1038
BmcAI AGTACT 1 cut(s) 1111
Bme1390I CCNGG 3 cut(s) 300, 735, 798
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 267, 492
BmiI GGNNCC 2 cut(s) 296, 556
BmrFI CCNGG 3 cut(s) 300, 735, 798
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 364, 903
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 756, 1111
BpuEI CTTGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 1028
BsaJI CCNNGG 4 cut(s) 6, 217, 298, 471
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 637, 671, 734, 935
Bse118I RCCGGY 1 cut(s) 570
Bse1I ACTGG 3 cut(s) 177, 269, 1094
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 1028
BseBI CCWGG 3 cut(s) 300, 735, 798
BseDI CCNNGG 4 cut(s) 6, 217, 298, 471
BseGI GGATG 6 cut(s) 131, 232, 358, 400, 976, 982
BseJI GATNNNNATC 1 cut(s) 1028
BseLI CCNNNNNNNGG 5 cut(s) 223, 637, 671, 734, 935
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 3 cut(s) 177, 269, 1094
BseXI GCAGC 7 cut(s) 21, 602, 731, 734, 845, 883, 1048
BsgI GTGCAG 1 cut(s) 738
BshFI GGCC 5 cut(s) 5, 27, 494, 570, 1098
BshNI GGYRCC 2 cut(s) 294, 554
BsiSI CCGG 2 cut(s) 481, 571
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 5 cut(s) 223, 637, 671, 734, 935
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 5 cut(s) 5, 27, 494, 570, 1098
Bsp143I GATC 3 cut(s) 775, 823, 872
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 638, 814, 958, 1003
BspANI GGCC 5 cut(s) 5, 27, 494, 570, 1098
BspLI GGNNCC 2 cut(s) 296, 556
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 1 cut(s) 867
BspT107I GGYRCC 2 cut(s) 294, 554
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 570
BsrI ACTGG 3 cut(s) 177, 269, 1094
BssAI RCCGGY 1 cut(s) 570
BssECI CCNNGG 4 cut(s) 6, 217, 298, 471
BssMI GATC 3 cut(s) 775, 823, 872
BssT1I CCWWGG 2 cut(s) 6, 217
Bst2UI CCWGG 3 cut(s) 300, 735, 798
Bst4CI ACNGT 2 cut(s) 695, 986
Bst6I CTCTTC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 25, 846, 1001
BstDSI CCRYGG 2 cut(s) 6, 471
BstF5I GGATG 6 cut(s) 131, 232, 358, 400, 976, 982
BstKTI GATC 3 cut(s) 778, 826, 875
BstMBI GATC 3 cut(s) 775, 823, 872
BstMWI GCNNNNNNNGC 5 cut(s) 113, 590, 644, 893, 922
BstNI CCWGG 3 cut(s) 300, 735, 798
BstNSI RCATGY 1 cut(s) 1014
BstSCI CCNGG 3 cut(s) 298, 733, 796
BstSFI CTRYAG 3 cut(s) 102, 117, 897
BstV1I GCAGC 7 cut(s) 21, 602, 731, 734, 845, 883, 1048
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 775, 872
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 2 cut(s) 775, 872
BsuRI GGCC 5 cut(s) 5, 27, 494, 570, 1098
BtgI CCRYGG 2 cut(s) 6, 471
BtsCI GGATG 6 cut(s) 131, 232, 358, 400, 976, 982
BtsIMutI CAGTG 5 cut(s) 249, 262, 296, 982, 1087
Cac8I GCNNGC 3 cut(s) 25, 846, 1001
Cfr10I RCCGGY 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 267, 492
CseI GACGC 1 cut(s) 269
Csp6I GTAC 4 cut(s) 184, 295, 641, 1110
CspCI CAANNNNNGTGG 2 cut(s) 484, 519
CviAII CATG 4 cut(s) 7, 463, 559, 1011
CviQI GTAC 4 cut(s) 184, 295, 641, 1110
DpnI GATC 3 cut(s) 777, 825, 874
DpnII GATC 3 cut(s) 775, 823, 872
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 6, 217
Eco147I AGGCCT 2 cut(s) 27, 1098
Eco32I GATATC 2 cut(s) 468, 662
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 722
Eco72I CACGTG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 3 cut(s) 298, 733, 796
EcoRV GATATC 2 cut(s) 468, 662
EcoT14I CCWWGG 2 cut(s) 6, 217
ErhI CCWWGG 2 cut(s) 6, 217
FaeI CATG 4 cut(s) 10, 466, 562, 1014
FaiI YATR 9 cut(s) 8, 306, 389, 418, 464, 560, 653, 879, 1012
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 6, 462, 558, 1010
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 8 cut(s) 35, 591, 720, 723, 834, 897, 958, 1037
FokI GGATG 6 cut(s) 118, 239, 365, 387, 983, 989
Fsp4HI GCNGC 8 cut(s) 35, 591, 720, 723, 834, 897, 958, 1037
FspBI CTAG 4 cut(s) 396, 566, 579, 788
GluI GCNGC 8 cut(s) 35, 591, 720, 723, 834, 897, 958, 1037
GsuI CTGGAG 2 cut(s) 756, 1111
HaeIII GGCC 5 cut(s) 5, 27, 494, 570, 1098
HapII CCGG 2 cut(s) 481, 571
HgaI GACGC 1 cut(s) 269
Hin1II CATG 4 cut(s) 10, 466, 562, 1014
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HindIII AAGCTT 2 cut(s) 842, 997
HinfI GANTC 1 cut(s) 791
HpaII CCGG 2 cut(s) 481, 571
Hpy166II GTNNAC 2 cut(s) 393, 1008
Hpy188I TCNGA 3 cut(s) 828, 1056, 1064
Hpy188III TCNNGA 5 cut(s) 151, 206, 371, 779, 910
Hpy8I GTNNAC 2 cut(s) 393, 1008
Hpy99I CGWCG 1 cut(s) 711
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 2 cut(s) 695, 986
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 6 cut(s) 75, 377, 506, 719, 899, 1087
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 590, 644, 893, 922
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 4 cut(s) 10, 466, 562, 1014
KpnI GGTACC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 3 cut(s) 775, 823, 872
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 7 cut(s) 21, 602, 731, 734, 845, 883, 1048
LweI GCATC 2 cut(s) 364, 903
MaeI CTAG 4 cut(s) 396, 566, 579, 788
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 739, 980
MalI GATC 3 cut(s) 777, 825, 874
MboI GATC 3 cut(s) 775, 823, 872
MboII GAAGA 4 cut(s) 36, 59, 90, 470
MflI RGATCY 2 cut(s) 775, 872
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 381, 749, 782, 837
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 3 cut(s) 637, 1034, 1060
MnlI CCTC 9 cut(s) 38, 52, 150, 217, 358, 505, 915, 1088, 1109
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 690, 840, 951, 1016
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 481, 571
MspR9I CCNGG 3 cut(s) 300, 735, 798
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 3 cut(s) 300, 735, 798
MwoI GCNNNNNNNGC 5 cut(s) 113, 590, 644, 893, 922
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 775, 823, 872
NlaIII CATG 4 cut(s) 10, 466, 562, 1014
NlaIV GGNNCC 2 cut(s) 296, 556
NmuCI GTSAC 1 cut(s) 980
NspI RCATGY 1 cut(s) 1014
PceI AGGCCT 2 cut(s) 27, 1098
PciI ACATGT 1 cut(s) 1010
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PctI GAATGC 1 cut(s) 490
PflMI CCANNNNNTGG 2 cut(s) 671, 734
PkrI GCNGC 8 cut(s) 36, 592, 721, 724, 835, 898, 959, 1038
PleI GAGTC 1 cut(s) 785
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
PpsI GAGTC 1 cut(s) 785
Ppu21I YACGTR 1 cut(s) 635
PscI ACATGT 1 cut(s) 1010
Psp6I CCWGG 3 cut(s) 298, 733, 796
PspCI CACGTG 1 cut(s) 635
PspGI CCWGG 3 cut(s) 298, 733, 796
PspN4I GGNNCC 2 cut(s) 296, 556
PspPI GGNCC 2 cut(s) 267, 492
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 775, 872
RsaI GTAC 4 cut(s) 185, 296, 642, 1111
RsaNI GTAC 4 cut(s) 184, 295, 641, 1110
SaqAI TTAA 4 cut(s) 690, 840, 951, 1016
SatI GCNGC 8 cut(s) 35, 591, 720, 723, 834, 897, 958, 1037
Sau3AI GATC 3 cut(s) 775, 823, 872
Sau96I GGNCC 2 cut(s) 267, 492
ScaI AGTACT 1 cut(s) 1111
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 3 cut(s) 300, 735, 798
SfaNI GCATC 2 cut(s) 364, 903
SfcI CTRYAG 3 cut(s) 102, 117, 897
SinI GGWCC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 4 cut(s) 381, 749, 782, 837
SseBI AGGCCT 2 cut(s) 27, 1098
SsiI CCGC 4 cut(s) 638, 814, 958, 1003
SspMI CTAG 4 cut(s) 396, 566, 579, 788
StuI AGGCCT 2 cut(s) 27, 1098
StyD4I CCNGG 3 cut(s) 298, 733, 796
StyI CCWWGG 2 cut(s) 6, 217
TaaI ACNGT 2 cut(s) 695, 986
TaiI ACGT 1 cut(s) 637
TaqI TCGA 3 cut(s) 207, 370, 1044
TasI AATT 4 cut(s) 381, 749, 782, 837
TatI WGTACW 1 cut(s) 1109
TauI GCSGC 1 cut(s) 960
Tru1I TTAA 4 cut(s) 690, 840, 951, 1016
Tru9I TTAA 4 cut(s) 690, 840, 951, 1016
TscAI CASTG 5 cut(s) 256, 269, 296, 989, 1094
TseFI GTSAC 1 cut(s) 980
TseI GCWGC 7 cut(s) 34, 590, 719, 722, 833, 896, 1036
Tsp45I GTSAC 1 cut(s) 980
TspDTI ATGAA 3 cut(s) 59, 575, 752
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 5 cut(s) 256, 269, 296, 989, 1094
Van91I CCANNNNNTGG 2 cut(s) 671, 734
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 381
XceI RCATGY 1 cut(s) 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 4 cut(s) 396, 566, 579, 788
ZrmI AGTACT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.