Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015926

Physical Location & Seq

Genomic Coordinates Forward (+)

19298530 .. 19301222

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCCATGGCTGTTCAAGTAGCAAGTCTCTGGCAACCAAGTTCTTCCACAACCCCAACTCACTTGAACCTTCTTCATTCCTTTGGAAGCAAATCAAAGCCACCATCTTCATCTTCATCAGCTCTCTCCGCTACTTCTTCTCTCTCATCCCCAGCTCCCACTATTCAGATTGTTGGTGGGAGAAATCCGACTTGGTATGAAAACGGAAATGCCAACGATGCTTTTGAAGATGATTGGTATGATTTGGATACTGACCTCTATCACTGGACTAAGGCACTCCGTCCTGTTCAGTGGTATCCTGGTCATATTGCCAAAACTGAGAAAGAACTCAAAACTCAACTCAAGTTAATGGATGTAGTGATTGAGGTTCGAGATGCGAGAATTCCATTGTCCACTAGTCATCCACAGATGGATTTATGGCTTGGTAATAGGAGAAGAATTTTGGTGTTGAATAGAGAAGACATGATATCCACGGCAGACCGGAATGCTTGGGCGACCCATTTTGCAAGGGAAGGGACGAAAGTTGTCTTTGCAAATGGCAAACTTGGAATGGGCGCTATGAAGCTTGGGCGGTTAGCTAAAGCATTAGCAGCAGATGTAAATGTCAGACGCAGAGCCAAAGGACTTCTTCCTCGAGCGGTACGAGCTGGGATTGTTGGATATCCAAATGTTGGCAAATCGTCTTTGATTAACCGTTTGCTGACAAGACGAATGTGTCCAGCAGCTCCAAGACCTGGAGTTACAAGAGAACTGAAGTGGGTTCATTTCGGGAAAGATCTTGAATTGCTAGATTCTCCTGGTATACTCCCAATGCGGATAAGTGATCAAACAGCAGCAATAAAGCTTGCTATTTGTGATGATATTGGAGAGAGATCCTATGGTGTTGCTGATATTGCATCAATTCTTGTCCAGATGTTAGCAAGGCTTCCATCAGTAGGCACAGAAACTCTTAACAAACGCTACAAGATGGATGCGGATGGTTACTGTGGTAAAACATATGTTCAGAAGCTTGCAGTTCACTTGTTCAATGGGGATACACATCAAGCCGCATTTCGTATTCTGACGGATTTTCGAAAAGGGAGGTTTGGTTGGATCGCGCTGGAGAGGCCTCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

373

Amino Acids

41.28

Weight (kDa)

9.89

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	216 - 270	5.4e-15	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02790
fragaria_vesca	FvH4_2g23540
malus_domestica	MD11G1284900.v1.1
prunus_persica	Prupe.8G071100_v2.0.a1 Prupe.8G071100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291011
rosa_laevigata	RLG00000012155
rosa_multiflora	Rmu_sc0041551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176460
rosa_rugosa	Rorug06G0217000
rosa_samantha	Rh6AG326900 Rh6BG334400 Rh6CG340600 Rh6DG327900
rosa_wichuraiana	Rw6G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	714
AccB7I	CCANNNNNTGG	2 cut(s)	671, 734
AccBSI	CCGCTC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	802
AccII	CGCG	1 cut(s)	1097
AciI	CCGC	6 cut(s)	129, 571, 638, 814, 974, 1047
AclWI	GGATC	2 cut(s)	867, 1100
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	381, 438
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	3 cut(s)	671, 734, 935
AgsI	TTSAA	6 cut(s)	17, 67, 227, 451, 782, 1027
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	3 cut(s)	298, 733, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	8 cut(s)	122, 155, 565, 578, 647, 725, 844, 1009
AluI	AGCT	8 cut(s)	122, 155, 565, 578, 647, 725, 844, 1009
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	867, 1100
Ama87I	CYCGRG	1 cut(s)	633
AoxI	GGCC	2 cut(s)	3, 1106
ApeKI	GCWGC	3 cut(s)	590, 722, 833
ApoI	RAATTY	2 cut(s)	381, 438
AspLEI	GCGC	2 cut(s)	557, 1099
AsuII	TTCGAA	1 cut(s)	1072
AvaI	CYCGRG	1 cut(s)	633
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	602, 734, 845
BccI	CCATC	5 cut(s)	112, 403, 937, 961, 971
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	3 cut(s)	300, 735, 798
BciVI	GTATCC	3 cut(s)	241, 306, 1027
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	32
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	396, 788
BfoI	RGCGCY	1 cut(s)	558
BfuI	GTATCC	3 cut(s)	241, 306, 1027
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	4 cut(s)	591, 723, 834, 1047
BlsI	GCNGC	4 cut(s)	592, 724, 835, 1048
Bme1390I	CCNGG	3 cut(s)	300, 735, 798
BmeT110I	CYCGRG	1 cut(s)	633
BmrFI	CCNGG	3 cut(s)	300, 735, 798
BmsI	GCATC	4 cut(s)	208, 364, 905, 961
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	756
Bpu14I	TTCGAA	1 cut(s)	1072
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	1038
BsaJI	CCNNGG	2 cut(s)	6, 471
BsaWI	WCCGGW	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	3 cut(s)	671, 734, 935
Bse1I	ACTGG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	1038
BseBI	CCWGG	3 cut(s)	300, 735, 798
BseDI	CCNNGG	2 cut(s)	6, 471
BseGI	GGATG	5 cut(s)	146, 358, 400, 976, 982
BseJI	GATNNNNATC	1 cut(s)	1038
BseLI	CCNNNNNNNGG	3 cut(s)	671, 734, 935
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	602, 734, 845
BseYI	CCCAGC	2 cut(s)	151, 647
Bsh1236I	CGCG	1 cut(s)	1097
BshFI	GGCC	2 cut(s)	5, 1108
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	671, 734, 935
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	5, 1108
BsoBI	CYCGRG	1 cut(s)	633
Bsp119I	TTCGAA	1 cut(s)	1072
Bsp143I	GATC	4 cut(s)	775, 823, 872, 1092
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	129, 571, 638, 814, 974, 1047
BspANI	GGCC	2 cut(s)	5, 1108
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	1097
BspPI	GGATC	2 cut(s)	867, 1100
BspT104I	TTCGAA	1 cut(s)	1072
BsrBI	CCGCTC	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	6, 471
BssMI	GATC	4 cut(s)	775, 823, 872, 1092
BssNAI	GTATAC	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	803
Bst2UI	CCWGG	3 cut(s)	300, 735, 798
Bst4CI	ACNGT	2 cut(s)	695, 986
BstBI	TTCGAA	1 cut(s)	1072
BstC8I	GCNNGC	2 cut(s)	846, 1011
BstDEI	CTNAG	2 cut(s)	270, 318
BstDSI	CCRYGG	2 cut(s)	6, 471
BstF5I	GGATG	5 cut(s)	146, 358, 400, 976, 982
BstFNI	CGCG	1 cut(s)	1097
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	557, 1099
BstKTI	GATC	4 cut(s)	778, 826, 875, 1095
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	775, 823, 872, 1092
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 218, 590, 644, 893, 1105
BstNI	CCWGG	3 cut(s)	300, 735, 798
BstSCI	CCNGG	3 cut(s)	298, 733, 796
BstUI	CGCG	1 cut(s)	1097
BstV1I	GCAGC	3 cut(s)	602, 734, 845
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	775, 872
BstYI	RGATCY	2 cut(s)	775, 872
BstZ17I	GTATAC	1 cut(s)	803
BsuI	GTATCC	3 cut(s)	241, 306, 1027
BsuRI	GGCC	2 cut(s)	5, 1108
BtgI	CCRYGG	2 cut(s)	6, 471
BtsCI	GGATG	5 cut(s)	146, 358, 400, 976, 982
BtsIMutI	CAGTG	2 cut(s)	262, 296
Cac8I	GCNNGC	2 cut(s)	846, 1011
CfoI	GCGC	2 cut(s)	557, 1099
CseI	GACGC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	2 cut(s)	7, 463
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	2 cut(s)	270, 318
DpnI	GATC	4 cut(s)	777, 825, 874, 1094
DpnII	GATC	4 cut(s)	775, 823, 872, 1092
DrdI	GACNNNNNNGTC	1 cut(s)	714
DseDI	GACNNNNNNGTC	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	1108
Eco32I	GATATC	2 cut(s)	468, 662
Eco57I	CTGAAG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	3 cut(s)	298, 733, 796
EcoRV	GATATC	2 cut(s)	468, 662
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 466
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	2 cut(s)	6, 462
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	4 cut(s)	591, 723, 834, 1047
FokI	GGATG	5 cut(s)	133, 365, 387, 983, 989
Fsp4HI	GCNGC	4 cut(s)	591, 723, 834, 1047
FspBI	CTAG	2 cut(s)	396, 788
GlaI	GCGC	2 cut(s)	556, 1098
GluI	GCNGC	4 cut(s)	591, 723, 834, 1047
GsaI	CCCAGC	2 cut(s)	155, 651
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	5, 1108
HapII	CCGG	1 cut(s)	481
HgaI	GACGC	1 cut(s)	618
HhaI	GCGC	2 cut(s)	557, 1099
Hin1II	CATG	2 cut(s)	10, 466
Hin6I	GCGC	2 cut(s)	555, 1097
HinP1I	GCGC	2 cut(s)	555, 1097
HindIII	AAGCTT	3 cut(s)	563, 842, 1007
HinfI	GANTC	1 cut(s)	791
HpaII	CCGG	1 cut(s)	481
Hpy166II	GTNNAC	3 cut(s)	393, 803, 1018
Hpy188I	TCNGA	5 cut(s)	168, 189, 608, 1005, 1062
Hpy188III	TCNNGA	4 cut(s)	371, 769, 779, 910
Hpy8I	GTNNAC	3 cut(s)	393, 803, 1018
HpyAV	CCTTC	2 cut(s)	80, 506
HpyCH4III	ACNGT	2 cut(s)	695, 986
HpyCH4V	TGCA	4 cut(s)	506, 533, 896, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 218, 590, 644, 893, 1105
HpyF3I	CTNAG	2 cut(s)	270, 318
Hsp92II	CATG	2 cut(s)	10, 466
HspAI	GCGC	2 cut(s)	555, 1097
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	4 cut(s)	775, 823, 872, 1092
LmnI	GCTCC	2 cut(s)	160, 730
Lsp1109I	GCAGC	3 cut(s)	602, 734, 845
LweI	GCATC	4 cut(s)	208, 364, 905, 961
MaeI	CTAG	2 cut(s)	396, 788
MaeIII	GTNAC	2 cut(s)	739, 980
MalI	GATC	4 cut(s)	777, 825, 874, 1094
MbiI	CCGCTC	1 cut(s)	638
MboI	GATC	4 cut(s)	775, 823, 872, 1092
MboII	GAAGA	9 cut(s)	36, 65, 99, 105, 129, 239, 447, 470, 620
MflI	RGATCY	2 cut(s)	775, 872
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	381, 438, 782, 900
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	212, 637, 1070
MnlI	CCTC	6 cut(s)	266, 358, 642, 1074, 1098, 1119
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	347, 690, 951
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	3 cut(s)	300, 735, 798
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	3 cut(s)	300, 735, 798
MvnI	CGCG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	6 cut(s)	128, 218, 590, 644, 893, 1105
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	4 cut(s)	775, 823, 872, 1092
NlaIII	CATG	2 cut(s)	10, 466
NspV	TTCGAA	1 cut(s)	1072
PaeR7I	CTCGAG	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	1108
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	791
PflMI	CCANNNNNTGG	2 cut(s)	671, 734
PkrI	GCNGC	4 cut(s)	592, 724, 835, 1048
Psp6I	CCWGG	3 cut(s)	298, 733, 796
PspFI	CCCAGC	2 cut(s)	151, 647
PspGI	CCWGG	3 cut(s)	298, 733, 796
PspXI	VCTCGAGB	1 cut(s)	633
PsuI	RGATCY	2 cut(s)	775, 872
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SaqAI	TTAA	3 cut(s)	347, 690, 951
SatI	GCNGC	4 cut(s)	591, 723, 834, 1047
Sau3AI	GATC	4 cut(s)	775, 823, 872, 1092
ScrFI	CCNGG	3 cut(s)	300, 735, 798
SfaNI	GCATC	4 cut(s)	208, 364, 905, 961
Sfr274I	CTCGAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	1072
SlaI	CTCGAG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	341, 633
SmoI	CTYRAG	2 cut(s)	341, 633
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	4 cut(s)	381, 438, 782, 900
SseBI	AGGCCT	1 cut(s)	1108
SsiI	CCGC	6 cut(s)	129, 571, 638, 814, 974, 1047
SspMI	CTAG	2 cut(s)	396, 788
StuI	AGGCCT	1 cut(s)	1108
StyD4I	CCNGG	3 cut(s)	298, 733, 796
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	695, 986
TaqI	TCGA	3 cut(s)	370, 634, 1072
TasI	AATT	4 cut(s)	381, 438, 782, 900
TauI	GCSGC	1 cut(s)	1049
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	3 cut(s)	347, 690, 951
Tru9I	TTAA	3 cut(s)	347, 690, 951
TscAI	CASTG	2 cut(s)	269, 296
TseI	GCWGC	3 cut(s)	590, 722, 833
TspDTI	ATGAA	6 cut(s)	65, 99, 105, 213, 575, 752
TspGWI	ACGGA	3 cut(s)	219, 269, 1079
TspRI	CASTG	2 cut(s)	269, 296
Van91I	CCANNNNNTGG	2 cut(s)	671, 734
XapI	RAATTY	2 cut(s)	381, 438
XhoI	CTCGAG	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	2 cut(s)	396, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.