Rh6DG327900

Mitochondrial ribosome-associated GTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015926
Physical Location & Seq
Forward (+)
53286775 .. 53288703
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG327900.1

Sequence Viewer

Length: 975 bp
ATGGCCATGGCTGTTCAAGTAGCAAGTCTCTGGCTACCCAGTTCTTCTTCCACAACCCCAACTCACTTAAACCTTCTTCATTCCCTTGGAAGCAAATCAAAGCCACCATCATCGTCTTCCTCAGCTCTCTCTGCTACTTCTTCACTCTCATCCCCAGCTCCCACTATTCAGATTGTTGGTGGGAGAAATCCGACTTGGAATGAAAACGGAAATGCCAATTCTGATGGTTTTGAAGATGATTGGTATGACCTGGATACTGATCTCTATCACTGGACCAAGGCACTGCGTCCTGTTCAGTGGTATCCTGGTCATATTGCCAAAACTGAGAAAGAACTGAAAACACAACTCAAGTTGATGGATGTAGTGATTGAGGTTCGAGATGCGAGAATTCCATTGTCCACTAGTCATCCACAGATGGATTTATGGCTTGGTAATAGGAGAAGAGTTTTGGTGTTGAATAGAGAAGACATGATTTCCACGGCAGACCGGAATGCTTGGGCGACCTATTTTGCAAGGCAAGGGACGAAAGTTGTCTTTTCGAATGGCAAACTTGGAATGGGCGCTATGAAGCTAGGGCGGTTAGCTAAAGCATTAGCAGCAGATGTAAACGTCAGACGCGGAGCCAAAGGACTTCTTCCTCGTGCGGTACGAGCTGGGATTGTTGGATATCCAAATGTTGGCAAATCGTCTTTGATTAACCGTTTGCTGACGAGACGAATGTGTCCAGCAGCTCCAAGACCTGGAGTTACAAGAGAACTGAAGTGGGTTCATTTCGGGAAAGACCTTGAATTGTTAGATTCTCCTGGTATACTCCCAATGCGGATTAGTGATCAAACAGCAGCAATAAAGCTTGCTATTTGTGATGATATTGGAGAGAGATCCTATGGTGTTGTGGATATTGCAGCAATTCTTGTCCAGATGTTAGCAAGGCTTCCATCAGTGGGTATGTATCACAGCTCGTTGGAGAGAGATTAA

Protein Analysis

324

Amino Acids

35.52

Weight (kDa)

9.74

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 218 - 272 4.7e-15 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02790
fragaria_vesca FvH4_2g23540
malus_domestica MD11G1284900.v1.1
prunus_persica Prupe.8G071100_v2.0.a1 Prupe.8G071100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291011
rosa_laevigata RLG00000012155
rosa_multiflora Rmu_sc0041551.1_g000001
rosa_roxburghii Rroxscaffold_7G00176460
rosa_rugosa Rorug06G0217000
rosa_samantha Rh6AG326900 Rh6BG334400 Rh6CG340600 Rh6DG327900
rosa_wichuraiana Rw6G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 720
AccB7I CCANNNNNTGG 2 cut(s) 677, 740
AccI GTMKAC 1 cut(s) 808
AccII CGCG 1 cut(s) 618
AciI CCGC 4 cut(s) 577, 618, 644, 820
AclWI GGATC 1 cut(s) 873
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 779
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 3 cut(s) 677, 740, 941
AgsI TTSAA 4 cut(s) 17, 233, 457, 788
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 4 cut(s) 249, 304, 739, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 8 cut(s) 125, 158, 571, 584, 653, 731, 850, 957
AluI AGCT 8 cut(s) 125, 158, 571, 584, 653, 731, 850, 957
Alw26I GTCTC 2 cut(s) 32, 706
AlwI GGATC 1 cut(s) 873
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 596, 728, 839, 902
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 2 cut(s) 108, 471
BbvCI CCTCAGC 1 cut(s) 121
BbvI GCAGC 4 cut(s) 608, 740, 851, 914
BccI CCATC 5 cut(s) 115, 218, 349, 409, 943
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 4 cut(s) 251, 306, 741, 804
BciVI GTATCC 2 cut(s) 247, 312
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 32, 706
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 402, 572
BfoI RGCGCY 1 cut(s) 564
BfuI GTATCC 2 cut(s) 247, 312
BisI GCNGC 4 cut(s) 597, 729, 840, 903
BlsI GCNGC 4 cut(s) 598, 730, 841, 904
Bme1390I CCNGG 4 cut(s) 251, 306, 741, 804
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 622
BmrFI CCNGG 4 cut(s) 251, 306, 741, 804
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 108, 471
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 258, 264
BsaJI CCNNGG 4 cut(s) 6, 85, 276, 477
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 3 cut(s) 677, 740, 941
Bse1I ACTGG 2 cut(s) 39, 275
Bse8I GATNNNNATC 2 cut(s) 258, 264
BseBI CCWGG 4 cut(s) 251, 306, 741, 804
BseDI CCNNGG 4 cut(s) 6, 85, 276, 477
BseGI GGATG 3 cut(s) 149, 364, 406
BseJI GATNNNNATC 2 cut(s) 258, 264
BseLI CCNNNNNNNGG 3 cut(s) 677, 740, 941
BseMII CTCAG 2 cut(s) 135, 315
BseNI ACTGG 2 cut(s) 39, 275
BseXI GCAGC 4 cut(s) 608, 740, 851, 914
BseYI CCCAGC 2 cut(s) 154, 653
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 3 cut(s) 677, 740, 941
BsmAI GTCTC 2 cut(s) 32, 706
BsmBI CGTCTC 1 cut(s) 706
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 539
Bsp143I GATC 3 cut(s) 259, 829, 878
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 577, 618, 644, 820
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 134, 316
BspFNI CGCG 1 cut(s) 618
BspLI GGNNCC 1 cut(s) 622
BspPI GGATC 1 cut(s) 873
BspT104I TTCGAA 1 cut(s) 539
BsrI ACTGG 2 cut(s) 39, 275
BssECI CCNNGG 4 cut(s) 6, 85, 276, 477
BssMI GATC 3 cut(s) 259, 829, 878
BssNAI GTATAC 1 cut(s) 809
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 3 cut(s) 6, 85, 276
Bst1107I GTATAC 1 cut(s) 809
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 4 cut(s) 251, 306, 741, 804
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 436
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 2 cut(s) 121, 324
BstDSI CCRYGG 2 cut(s) 6, 477
BstF5I GGATG 3 cut(s) 149, 364, 406
BstFNI CGCG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 3 cut(s) 262, 832, 881
BstMAI GTCTC 2 cut(s) 32, 706
BstMBI GATC 3 cut(s) 259, 829, 878
BstMWI GCNNNNNNNGC 3 cut(s) 131, 596, 650
BstNI CCWGG 4 cut(s) 251, 306, 741, 804
BstSCI CCNGG 4 cut(s) 249, 304, 739, 802
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 4 cut(s) 608, 740, 851, 914
BstV2I GAAGAC 2 cut(s) 108, 471
BstX2I RGATCY 1 cut(s) 878
BstYI RGATCY 1 cut(s) 878
BstZ17I GTATAC 1 cut(s) 809
BsuI GTATCC 2 cut(s) 247, 312
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 6, 477
BtsCI GGATG 3 cut(s) 149, 364, 406
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 4 cut(s) 268, 281, 302, 945
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 1 cut(s) 563
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 2 cut(s) 275, 624
Csp6I GTAC 1 cut(s) 647
CviAII CATG 2 cut(s) 7, 469
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 121, 324
DpnI GATC 3 cut(s) 261, 831, 880
DpnII GATC 3 cut(s) 259, 829, 878
DrdI GACNNNNNNGTC 1 cut(s) 720
DseDI GACNNNNNNGTC 1 cut(s) 720
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 3 cut(s) 6, 85, 276
Eco32I GATATC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 4 cut(s) 249, 304, 739, 802
EcoRV GATATC 1 cut(s) 668
EcoT14I CCWWGG 3 cut(s) 6, 85, 276
ErhI CCWWGG 3 cut(s) 6, 85, 276
Esp3I CGTCTC 1 cut(s) 706
FaeI CATG 2 cut(s) 10, 472
FaiI YATR 9 cut(s) 8, 246, 312, 424, 470, 566, 809, 885, 947
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 535
FatI CATG 2 cut(s) 6, 468
FbaI TGATCA 1 cut(s) 829
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 4 cut(s) 597, 729, 840, 903
FokI GGATG 3 cut(s) 136, 371, 393
Fsp4HI GCNGC 4 cut(s) 597, 729, 840, 903
FspBI CTAG 2 cut(s) 402, 572
GlaI GCGC 1 cut(s) 562
GluI GCNGC 4 cut(s) 597, 729, 840, 903
GsaI CCCAGC 2 cut(s) 158, 657
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 487
HgaI GACGC 2 cut(s) 275, 624
HhaI GCGC 1 cut(s) 563
Hin1II CATG 2 cut(s) 10, 472
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 1 cut(s) 797
HpaII CCGG 1 cut(s) 487
Hpy166II GTNNAC 3 cut(s) 399, 607, 809
Hpy188I TCNGA 4 cut(s) 171, 192, 223, 614
Hpy188III TCNNGA 3 cut(s) 377, 775, 916
Hpy8I GTNNAC 3 cut(s) 399, 607, 809
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 2 cut(s) 512, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 596, 650
HpyF3I CTNAG 2 cut(s) 121, 324
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 2 cut(s) 10, 472
HspAI GCGC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 3 cut(s) 259, 829, 878
LmnI GCTCC 3 cut(s) 163, 620, 736
Lsp1109I GCAGC 4 cut(s) 608, 740, 851, 914
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 402, 572
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 1 cut(s) 745
MalI GATC 3 cut(s) 261, 831, 880
MboI GATC 3 cut(s) 259, 829, 878
MboII GAAGA 9 cut(s) 36, 39, 68, 108, 132, 245, 453, 476, 626
MflI RGATCY 1 cut(s) 878
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 217, 387, 788, 906
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 215, 643, 942
MnlI CCTC 3 cut(s) 130, 364, 648
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 68, 696, 973
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 4 cut(s) 251, 306, 741, 804
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 4 cut(s) 251, 306, 741, 804
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 131, 596, 650
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 259, 829, 878
NlaIII CATG 2 cut(s) 10, 472
NlaIV GGNNCC 1 cut(s) 622
NspV TTCGAA 1 cut(s) 539
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 1 cut(s) 797
PflMI CCANNNNNTGG 2 cut(s) 677, 740
PkrI GCNGC 4 cut(s) 598, 730, 841, 904
Psp6I CCWGG 4 cut(s) 249, 304, 739, 802
PspFI CCCAGC 2 cut(s) 154, 653
PspGI CCWGG 4 cut(s) 249, 304, 739, 802
PspN4I GGNNCC 1 cut(s) 622
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 878
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
SaqAI TTAA 3 cut(s) 68, 696, 973
SatI GCNGC 4 cut(s) 597, 729, 840, 903
Sau3AI GATC 3 cut(s) 259, 829, 878
Sau96I GGNCC 1 cut(s) 273
ScrFI CCNGG 4 cut(s) 251, 306, 741, 804
SfaNI GCATC 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 4 cut(s) 217, 387, 788, 906
SsiI CCGC 4 cut(s) 577, 618, 644, 820
SspMI CTAG 2 cut(s) 402, 572
StyD4I CCNGG 4 cut(s) 249, 304, 739, 802
StyI CCWWGG 3 cut(s) 6, 85, 276
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 1 cut(s) 612
TaqI TCGA 2 cut(s) 376, 539
TasI AATT 4 cut(s) 217, 387, 788, 906
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 3 cut(s) 68, 696, 973
Tru9I TTAA 3 cut(s) 68, 696, 973
TscAI CASTG 4 cut(s) 275, 288, 302, 945
TseI GCWGC 4 cut(s) 596, 728, 839, 902
TspDTI ATGAA 4 cut(s) 68, 216, 581, 758
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 4 cut(s) 275, 288, 302, 945
Van91I CCANNNNNTGG 2 cut(s) 677, 740
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 2 cut(s) 402, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.