Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041551.1

Orthogroup ID

OG0015926

Physical Location & Seq

Genomic Coordinates Forward (+)

283 .. 2497

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041551.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggctgttcaagtagcaagtctctggctacccagttcttcttccacaaccccaactcacttaaaccttcttcattcccttggaagcaaatcaaagccaccatcttcgtcttcctcagctctctctgctacttcttcactctcatccccagctcccactattcagattgttggtgggagaaatccgacttggaatgaaaacggaaatgccaattctgatggttttgaagatgattggtatgacctggatactgatctctatcactggaccaaggcactgcgtcctgttcagtggtatcctggtcatattgccaaaactgagaaagaactgaaaacacaactcaagttgatggatgtagtgattgaggttcgagatgcgagaattccattgtccactagtcatccacagatggatttatggcttggtaataggagaagagttttggtgttgaatagagaagacatgatttccacggcagaccggaatgcttgggcgacctattttgcaaggcaagggacgaaagttgtcttttcgaatggcaaacttggaatgggcgctatgaaactagggcggttagctaaagcattagcagcagatgtaaatgtcagacgcagagccagaggacttcttcctcgtgcggtacgagctgggattgttggatatccaaatgttggcaaatcgtctttgattaaccgtttactgacgagacgaatgtgtccagcagctccaagacctggagttacaagagaactgaagtgggttcatttcgggaaagaccttgaattgctagattctcctggaatactcccaatgcggattagcgatcaaacagcagcaataaagcttgctatttgtgatgatattggagagagatcttatggtgttgtggatattgcagcaattcttgtccagatgttagcaaggcttccatcagtgggtataaagactcttaacaaacgctacaagatggatgcggatggttactgtggtaaaacatttgttcagaagcttgcagttcacttgttcaatggagacacacatcaagccgcatttcgtgttctgacggattttcgaaaagggaggtttggttggattgcgctggagaggcctccgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

372

Amino Acids

41.19

Weight (kDa)

10.08

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02790
fragaria_vesca	FvH4_2g23540
malus_domestica	MD11G1284900.v1.1
prunus_persica	Prupe.8G071100_v2.0.a1 Prupe.8G071100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291011
rosa_laevigata	RLG00000012155
rosa_multiflora	Rmu_sc0041551.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176460
rosa_rugosa	Rorug06G0217000
rosa_samantha	Rh6AG326900 Rh6BG334400 Rh6CG340600 Rh6DG327900
rosa_wichuraiana	Rw6G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	714
AccB7I	CCANNNNNTGG	2 cut(s)	671, 734
AciI	CCGC	5 cut(s)	571, 638, 814, 974, 1047
AcsI	RAATTY	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	3 cut(s)	671, 734, 935
AgsI	TTSAA	5 cut(s)	11, 227, 451, 782, 1027
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	4 cut(s)	243, 298, 733, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	7 cut(s)	119, 152, 578, 647, 725, 844, 1009
AluI	AGCT	7 cut(s)	119, 152, 578, 647, 725, 844, 1009
Alw26I	GTCTC	3 cut(s)	26, 700, 1026
AoxI	GGCC	1 cut(s)	1106
ApeKI	GCWGC	4 cut(s)	590, 722, 833, 896
ApoI	RAATTY	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	557, 1099
AspS9I	GGNCC	1 cut(s)	267
AsuII	TTCGAA	2 cut(s)	533, 1072
AvaII	GGWCC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	633
BbsI	GAAGAC	2 cut(s)	102, 465
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	4 cut(s)	602, 734, 845, 908
BccI	CCATC	7 cut(s)	109, 212, 343, 403, 937, 961, 971
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	4 cut(s)	245, 300, 735, 798
BciVI	GTATCC	2 cut(s)	241, 306
BcoDI	GTCTC	3 cut(s)	26, 700, 1026
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	396, 566, 788
BfoI	RGCGCY	1 cut(s)	558
BfuI	GTATCC	2 cut(s)	241, 306
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	5 cut(s)	591, 723, 834, 897, 1047
BlsI	GCNGC	5 cut(s)	592, 724, 835, 898, 1048
Bme1390I	CCNGG	4 cut(s)	245, 300, 735, 798
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	4 cut(s)	245, 300, 735, 798
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	364, 961
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	2 cut(s)	102, 465
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	115
Bpu14I	TTCGAA	2 cut(s)	533, 1072
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	2 cut(s)	252, 258
BsaJI	CCNNGG	3 cut(s)	79, 270, 471
BsaWI	WCCGGW	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	3 cut(s)	671, 734, 935
Bse1I	ACTGG	2 cut(s)	33, 269
Bse8I	GATNNNNATC	2 cut(s)	252, 258
BseBI	CCWGG	4 cut(s)	245, 300, 735, 798
BseDI	CCNNGG	3 cut(s)	79, 270, 471
BseGI	GGATG	5 cut(s)	143, 358, 400, 976, 982
BseJI	GATNNNNATC	2 cut(s)	252, 258
BseLI	CCNNNNNNNGG	3 cut(s)	671, 734, 935
BseMII	CTCAG	2 cut(s)	129, 309
BseNI	ACTGG	2 cut(s)	33, 269
BseXI	GCAGC	4 cut(s)	602, 734, 845, 908
BseYI	CCCAGC	2 cut(s)	148, 647
BshFI	GGCC	1 cut(s)	1108
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	671, 734, 935
BsmAI	GTCTC	3 cut(s)	26, 700, 1026
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	1108
Bsp119I	TTCGAA	2 cut(s)	533, 1072
Bsp143I	GATC	3 cut(s)	253, 823, 872
BspACI	CCGC	5 cut(s)	571, 638, 814, 974, 1047
BspANI	GGCC	1 cut(s)	1108
BspCNI	CTCAG	2 cut(s)	128, 310
BspT104I	TTCGAA	2 cut(s)	533, 1072
BsrI	ACTGG	2 cut(s)	33, 269
BssECI	CCNNGG	3 cut(s)	79, 270, 471
BssMI	GATC	3 cut(s)	253, 823, 872
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	2 cut(s)	79, 270
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	4 cut(s)	245, 300, 735, 798
Bst4CI	ACNGT	2 cut(s)	695, 986
Bst6I	CTCTTC	1 cut(s)	430
BstBI	TTCGAA	2 cut(s)	533, 1072
BstC8I	GCNNGC	2 cut(s)	846, 1011
BstDEI	CTNAG	2 cut(s)	115, 318
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	5 cut(s)	143, 358, 400, 976, 982
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	557, 1099
BstKTI	GATC	3 cut(s)	256, 826, 875
BstMAI	GTCTC	3 cut(s)	26, 700, 1026
BstMBI	GATC	3 cut(s)	253, 823, 872
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 590, 644, 1105
BstNI	CCWGG	4 cut(s)	245, 300, 735, 798
BstSCI	CCNGG	4 cut(s)	243, 298, 733, 796
BstV1I	GCAGC	4 cut(s)	602, 734, 845, 908
BstV2I	GAAGAC	2 cut(s)	102, 465
BstX2I	RGATCY	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	872
BsuI	GTATCC	2 cut(s)	241, 306
BsuRI	GGCC	1 cut(s)	1108
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	5 cut(s)	143, 358, 400, 976, 982
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	4 cut(s)	262, 275, 296, 939
Cac8I	GCNNGC	2 cut(s)	846, 1011
CfoI	GCGC	2 cut(s)	557, 1099
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	2 cut(s)	269, 618
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	1 cut(s)	463
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	2 cut(s)	115, 318
DpnI	GATC	3 cut(s)	255, 825, 874
DpnII	GATC	3 cut(s)	253, 823, 872
DrdI	GACNNNNNNGTC	1 cut(s)	714
DseDI	GACNNNNNNGTC	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	79, 270
Eco147I	AGGCCT	1 cut(s)	1108
Eco32I	GATATC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	773
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	4 cut(s)	243, 298, 733, 796
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	2 cut(s)	79, 270
ErhI	CCWWGG	2 cut(s)	79, 270
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	1 cut(s)	466
FaiI	YATR	7 cut(s)	240, 306, 418, 464, 560, 879, 941
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	1 cut(s)	462
Fnu4HI	GCNGC	5 cut(s)	591, 723, 834, 897, 1047
FokI	GGATG	5 cut(s)	130, 365, 387, 983, 989
Fsp4HI	GCNGC	5 cut(s)	591, 723, 834, 897, 1047
FspBI	CTAG	3 cut(s)	396, 566, 788
GlaI	GCGC	2 cut(s)	556, 1098
GluI	GCNGC	5 cut(s)	591, 723, 834, 897, 1047
GsaI	CCCAGC	2 cut(s)	152, 651
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	1108
HapII	CCGG	1 cut(s)	481
HgaI	GACGC	2 cut(s)	269, 618
HhaI	GCGC	2 cut(s)	557, 1099
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	2 cut(s)	555, 1097
HinP1I	GCGC	2 cut(s)	555, 1097
HindIII	AAGCTT	2 cut(s)	842, 1007
HinfI	GANTC	2 cut(s)	791, 946
HpaII	CCGG	1 cut(s)	481
Hpy166II	GTNNAC	3 cut(s)	393, 698, 1018
Hpy188I	TCNGA	7 cut(s)	165, 186, 217, 608, 1005, 1062, 1113
Hpy188III	TCNNGA	3 cut(s)	371, 769, 910
Hpy8I	GTNNAC	3 cut(s)	393, 698, 1018
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	695, 986
HpyCH4V	TGCA	3 cut(s)	506, 896, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 590, 644, 1105
HpyF3I	CTNAG	2 cut(s)	115, 318
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	2 cut(s)	555, 1097
Kzo9I	GATC	3 cut(s)	253, 823, 872
LmnI	GCTCC	2 cut(s)	157, 730
Lsp1109I	GCAGC	4 cut(s)	602, 734, 845, 908
LweI	GCATC	2 cut(s)	364, 961
MaeI	CTAG	3 cut(s)	396, 566, 788
MaeIII	GTNAC	2 cut(s)	739, 980
MalI	GATC	3 cut(s)	255, 825, 874
MboI	GATC	3 cut(s)	253, 823, 872
MflI	RGATCY	1 cut(s)	872
MluCI	AATT	4 cut(s)	211, 381, 782, 900
MlyI	GAGTC	1 cut(s)	940
MmeI	TCCRAC	3 cut(s)	209, 637, 1070
MnlI	CCTC	7 cut(s)	124, 358, 614, 642, 1074, 1098, 1119
MseI	TTAA	3 cut(s)	62, 690, 951
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	4 cut(s)	245, 300, 735, 798
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	4 cut(s)	245, 300, 735, 798
MwoI	GCNNNNNNNGC	4 cut(s)	125, 590, 644, 1105
NdeII	GATC	3 cut(s)	253, 823, 872
NlaIII	CATG	1 cut(s)	466
NspV	TTCGAA	2 cut(s)	533, 1072
PceI	AGGCCT	1 cut(s)	1108
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	791
PflMI	CCANNNNNTGG	2 cut(s)	671, 734
PfoI	TCCNGGA	1 cut(s)	796
PkrI	GCNGC	5 cut(s)	592, 724, 835, 898, 1048
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
Psp6I	CCWGG	4 cut(s)	243, 298, 733, 796
PspFI	CCCAGC	2 cut(s)	148, 647
PspGI	CCWGG	4 cut(s)	243, 298, 733, 796
PspPI	GGNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	872
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SaqAI	TTAA	3 cut(s)	62, 690, 951
SatI	GCNGC	5 cut(s)	591, 723, 834, 897, 1047
Sau3AI	GATC	3 cut(s)	253, 823, 872
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	940
ScrFI	CCNGG	4 cut(s)	245, 300, 735, 798
SfaNI	GCATC	2 cut(s)	364, 961
SfuI	TTCGAA	2 cut(s)	533, 1072
SinI	GGWCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	4 cut(s)	211, 381, 782, 900
SseBI	AGGCCT	1 cut(s)	1108
SsiI	CCGC	5 cut(s)	571, 638, 814, 974, 1047
SspMI	CTAG	3 cut(s)	396, 566, 788
StuI	AGGCCT	1 cut(s)	1108
StyD4I	CCNGG	4 cut(s)	243, 298, 733, 796
StyI	CCWWGG	2 cut(s)	79, 270
TaaI	ACNGT	2 cut(s)	695, 986
TaqI	TCGA	3 cut(s)	370, 533, 1072
TasI	AATT	4 cut(s)	211, 381, 782, 900
TauI	GCSGC	1 cut(s)	1049
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	3 cut(s)	62, 690, 951
Tru9I	TTAA	3 cut(s)	62, 690, 951
TscAI	CASTG	4 cut(s)	269, 282, 296, 939
TseI	GCWGC	4 cut(s)	590, 722, 833, 896
TspDTI	ATGAA	4 cut(s)	62, 210, 575, 752
TspGWI	ACGGA	2 cut(s)	216, 1079
TspRI	CASTG	4 cut(s)	269, 282, 296, 939
Van91I	CCANNNNNTGG	2 cut(s)	671, 734
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	381
XspI	CTAG	3 cut(s)	396, 566, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.