Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Reverse (-)

34689866 .. 34695640

Gene Structure 5775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTGTTACTCTCTCCTCAGTCTCAGCCCGCGCGTGTCTGCTTCGTTCACCGCGCAAGGCTGTGTCCCAGTTTTCACCACAATCCTTCAAATTGGGTTCCAATCCTCTGCTGCCGCGGACCACTTTACGGCCCAGAAAGCTTGTCGTTCGAGCTGCTAGAACCGAGTCCAGAGGAGTCTCTCTCGGCTTCAGACCTCCCAATTTTGAGCTTCCAGAGCCACTTACCGGGAAAGTTTGGAAATTGGAGGATTTTGAATCCCATCCTGCTTTACTGGTTATGTTTATCTGCAACCACTGCCCATTTGTTATACACCTGAAAAAAGCTATAGTGAAACTTACGAATTTTTATATGAAGAAAGGACTTGCAGTTGTTGCGATATCTTCAAATTCTGTAATAACGCATCCACAGGATGGACCAGAATTTATGTCAGAAGAAGCTAAACTTTTCAAGTATCCTTTCCCATATCTATATGACGAGTCGCAGGATGTTGCTCGAGAATTTGGAGCAGTTTGCACACCAGAGTTTTTCCTGTTTAAAAAGGATGGACGCAGGCCTTTTGAATTGGTGTACCATGGGCAGTTTGATGATTCGAGACCTAGTAATAATATGCCTGTAACTGGAAGGGACTTGAGCCTGGCAATAGATTGTGCTCTCAGTTGCCAACCAGTATCATCAGCTCAGAAACCCAGCATTGGATGCAGCATAAAGTGGCACCCTGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

242

Amino Acids

27.18

Weight (kDa)

9.38

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	67 - 184	2.5e-13	Redoxin
AhpC-TSA	PF00578	67 - 183	2.9e-13	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	714
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	4 cut(s)	33, 35, 55, 118
AciI	CCGC	4 cut(s)	31, 53, 116, 118
AcsI	RAATTY	4 cut(s)	343, 388, 422, 500
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
AgsI	TTSAA	5 cut(s)	91, 257, 387, 451, 563
AjnI	CCWGG	1 cut(s)	636
AluBI	AGCT	6 cut(s)	142, 155, 211, 326, 440, 680
AluI	AGCT	6 cut(s)	142, 155, 211, 326, 440, 680
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	3 cut(s)	28, 184, 589
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	2 cut(s)	131, 554
ApeKI	GCWGC	3 cut(s)	112, 155, 702
ApoI	RAATTY	4 cut(s)	343, 388, 422, 500
AspLEI	GCGC	2 cut(s)	35, 57
AspS9I	GGNCC	3 cut(s)	120, 132, 416
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	42, 69
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	120, 416
BanI	GGYRCC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	3 cut(s)	99, 142, 714
BccI	CCATC	3 cut(s)	270, 407, 539
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	28, 184, 589
BfaI	CTAG	2 cut(s)	159, 600
BfmI	CTRYAG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	4 cut(s)	113, 116, 156, 703
BlsI	GCNGC	4 cut(s)	114, 117, 157, 704
Bme1390I	CCNGG	2 cut(s)	229, 638
Bme18I	GGWCC	2 cut(s)	120, 416
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	120, 132, 416
BmiI	GGNNCC	2 cut(s)	100, 716
BmrFI	CCNGG	2 cut(s)	229, 638
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	412, 689
BmuI	ACTGGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	116, 574
Bsc4I	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
Bse1I	ACTGG	4 cut(s)	70, 279, 625, 668
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	116, 574
BseGI	GGATG	6 cut(s)	262, 403, 418, 493, 550, 704
BseLI	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
BseMII	CTCAG	5 cut(s)	33, 39, 670, 695, 711
BseNI	ACTGG	4 cut(s)	70, 279, 625, 668
BseRI	GAGGAG	2 cut(s)	7, 189
BseXI	GCAGC	3 cut(s)	99, 142, 714
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	4 cut(s)	33, 35, 55, 118
BshFI	GGCC	2 cut(s)	133, 556
BshNI	GGYRCC	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	52, 641
BslI	CCNNNNNNNGG	5 cut(s)	129, 227, 413, 620, 695
BsmAI	GTCTC	3 cut(s)	28, 184, 589
BsmFI	GGGAC	2 cut(s)	52, 641
BsnI	GGCC	2 cut(s)	133, 556
Bso31I	GGTCTC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	4 cut(s)	31, 53, 116, 118
BspANI	GGCC	2 cut(s)	133, 556
BspCNI	CTCAG	5 cut(s)	32, 38, 669, 694, 712
BspFNI	CGCG	4 cut(s)	33, 35, 55, 118
BspLI	GGNNCC	2 cut(s)	100, 716
BspT107I	GGYRCC	1 cut(s)	714
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	4 cut(s)	70, 279, 625, 668
BssECI	CCNNGG	2 cut(s)	116, 574
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	638
BstAPI	GCANNNNNTGC	3 cut(s)	297, 374, 699
BstC8I	GCNNGC	2 cut(s)	31, 554
BstDEI	CTNAG	5 cut(s)	19, 25, 656, 681, 720
BstDSI	CCRYGG	2 cut(s)	116, 574
BstF5I	GGATG	6 cut(s)	262, 403, 418, 493, 550, 704
BstFNI	CGCG	4 cut(s)	33, 35, 55, 118
BstHHI	GCGC	2 cut(s)	35, 57
BstMAI	GTCTC	3 cut(s)	28, 184, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	227, 636
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	4 cut(s)	33, 35, 55, 118
BstV1I	GCAGC	3 cut(s)	99, 142, 714
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	133, 556
BtgI	CCRYGG	2 cut(s)	116, 574
BtsCI	GGATG	6 cut(s)	262, 403, 418, 493, 550, 704
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	31, 554
CfoI	GCGC	2 cut(s)	35, 57
Cfr13I	GGNCC	3 cut(s)	120, 132, 416
Cfr42I	CCGCGG	1 cut(s)	119
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	1 cut(s)	575
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	5 cut(s)	19, 25, 656, 681, 720
DraI	TTTAAA	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	574
Eco147I	AGGCCT	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	589
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	120, 416
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	1 cut(s)	578
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	52, 641
FatI	CATG	1 cut(s)	574
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	4 cut(s)	113, 116, 156, 703
FokI	GGATG	6 cut(s)	249, 390, 425, 500, 557, 711
Fsp4HI	GCNGC	4 cut(s)	113, 116, 156, 703
FspBI	CTAG	2 cut(s)	159, 600
GlaI	GCGC	2 cut(s)	34, 56
GluI	GCNGC	4 cut(s)	113, 116, 156, 703
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	133, 556
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	2 cut(s)	35, 57
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	2 cut(s)	33, 55
HinP1I	GCGC	2 cut(s)	33, 55
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	5 cut(s)	167, 177, 257, 479, 590
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	42, 69
Hpy166II	GTNNAC	2 cut(s)	50, 571
Hpy188I	TCNGA	3 cut(s)	194, 433, 684
Hpy188III	TCNNGA	4 cut(s)	171, 215, 497, 594
Hpy8I	GTNNAC	2 cut(s)	50, 571
HpyAV	CCTTC	2 cut(s)	97, 618
HpyCH4V	TGCA	4 cut(s)	291, 368, 516, 702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
HpyF3I	CTNAG	5 cut(s)	19, 25, 656, 681, 720
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	2 cut(s)	33, 55
KspI	CCGCGG	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	3 cut(s)	99, 142, 714
LweI	GCATC	2 cut(s)	412, 689
MaeI	CTAG	2 cut(s)	159, 600
MaeIII	GTNAC	2 cut(s)	7, 616
MboII	GAAGA	3 cut(s)	367, 375, 446
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	8 cut(s)	92, 202, 242, 343, 388, 422, 500, 563
MlyI	GAGTC	3 cut(s)	176, 186, 488
MnlI	CCTC	5 cut(s)	28, 117, 167, 207, 241
MseI	TTAA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	229, 638
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	4 cut(s)	33, 35, 55, 118
MwoI	GCNNNNNNNGC	5 cut(s)	139, 217, 297, 374, 699
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	574
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	2 cut(s)	100, 716
NmeAIII	GCCGAG	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	257, 590
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	114, 117, 157, 704
PleI	GAGTC	3 cut(s)	175, 185, 487
PpsI	GAGTC	3 cut(s)	175, 185, 487
Psp6I	CCWGG	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	100, 716
PspPI	GGNCC	3 cut(s)	120, 132, 416
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	4 cut(s)	113, 116, 156, 703
Sau96I	GGNCC	3 cut(s)	120, 132, 416
SchI	GAGTC	3 cut(s)	176, 186, 488
ScrFI	CCNGG	2 cut(s)	229, 638
SduI	GDGCHC	1 cut(s)	655
SetI	ASST	9 cut(s)	144, 157, 199, 213, 318, 328, 442, 601, 682
SfaNI	GCATC	2 cut(s)	412, 689
SfcI	CTRYAG	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	495
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	120, 416
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	495, 631
SmoI	CTYRAG	2 cut(s)	495, 631
Sse9I	AATT	8 cut(s)	92, 202, 242, 343, 388, 422, 500, 563
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	4 cut(s)	31, 53, 116, 118
SspMI	CTAG	2 cut(s)	159, 600
StuI	AGGCCT	1 cut(s)	556
StyD4I	CCNGG	2 cut(s)	227, 636
StyI	CCWWGG	1 cut(s)	574
TaqI	TCGA	3 cut(s)	151, 496, 593
TasI	AATT	8 cut(s)	92, 202, 242, 343, 388, 422, 500, 563
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	257, 590
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	302
TseI	GCWGC	3 cut(s)	112, 155, 702
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	120, 416
XapI	RAATTY	4 cut(s)	343, 388, 422, 500
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	2 cut(s)	159, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.