RLG00000007940

Carboxylesterase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
23217904 .. 23219133
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007940

Sequence Viewer

Length: 1230 bp
ATGATGTCAAACGCTTCTTCCTTTCTAGGCATATCAACAAACACCTTTCGTGCACCAATCCATTATCCTGTACTTCAAAAACTTCTCTCCATCTTCTCTAATGGCTTCCACTACCAAAGAAACCGCCTCAGAGTTCCTTCCTCTTATCACAGTCTTCAAAGATCACAGAGTCATGGGCTCACCATATGTGACCCCATCTCTTCAAAACCCAGAAACAAATTTCTTCTCCAAACTCATCACCAATGCAGTCGCAGTGAGACTATCGATTCCGTTCCCAAGGAGATAGACACAGAGCTTCCCCCATTTCTCAGAATCTACAAAGACGGCTCTGTTGAACGACTCATGGGCTCCCCATATGTACCCCCAACACTTGATGACCCAGATTCAGGAGTGTCATCAAAAGACATCACAATTTCACAAAATCCTTTGATTTCTGCCAGACTCTTCCTCCCAAAACTCAATGAGCCTCACAAGAAAATACCCATCTTGGTTTACTACCATGGTGGAGCTTTCTGCGTCGAATCCGCCTTCTCTTTCGACCACCGCACGTTTCTCAACAGCTTGGTATCCCAAGCCAAAGTTGTTGCTGTGTCAGTCGAGTACAGAATGGCTCCTGAGCACTCTCTCCCCATTGCATATGACGATAGTTGGGCTGCACTGAATTGGGTTGCCTTGCATTTTGCTGATAATGGCATTACTGAAGAGCCCTGGTTGATCAGTCACGGCGAACCGAATCGGTTATTTCTAGGTGGTGATAGTGCAGGAGCCAACATTGCTCATAATGTGGCAATGAGAGTTGGGAAAGAACGATTGCCTAATGGTCTAAACTTGTTGGGAGTCTTTCTTACACACCCTTTTTTTTGGGGCTCCAAGCCCATTGAGGGAGACCCTTGTGAAGAGCCTGAGAACGATTTGGCTTGTTTGGTTTGGGACATGGCGTACCCTTCAGCCCCTGGTGGGATTGAGAATCCAATGATCAATCCTGTTGCTCCAGAAGCACCAAGCTTGGCTGGACTTGGGTGTTCAAGGGTGCTTGTTAGTGTTTCTGAGAACGATGAGCTGAGGCATAGAGGTGTGGGTTACTATGAGGCAGTGAAAAGAAGTGGGTTTGAAGGTGAAGCAGAGTTGGTTGAACTGGAAGGAGAGGATCATGCATTTCATATTTTGAAATTTGAGACTCGGAAAGCTAAGGAATTGACAAAAAAGTTGGCTCATTTCCTCCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

45.51

Weight (kDa)

6.14

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 149 - 263 7.5e-08 Carboxylesterase family
BD-FAE PF20434 155 - 272 2.4e-08 BD-FAE
Abhydrolase_3 PF07859 163 - 387 3.6e-44 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 124, 525, 544
AclWI GGATC 1 cut(s) 1155
AcsI RAATTY 2 cut(s) 218, 1169
AcuI CTGAAG 2 cut(s) 720, 930
AfaI GTAC 4 cut(s) 72, 360, 602, 941
AfiI CCNNNNNNNGG 3 cut(s) 386, 881, 957
AgsI TTSAA 8 cut(s) 77, 158, 204, 335, 1026, 1112, 1133, 1168
AjnI CCWGG 2 cut(s) 707, 952
AluBI AGCT 6 cut(s) 295, 509, 561, 1005, 1060, 1187
AluI AGCT 6 cut(s) 295, 509, 561, 1005, 1060, 1187
Alw21I GWGCWC 2 cut(s) 55, 621
Alw26I GTCTC 3 cut(s) 251, 879, 1169
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 1 cut(s) 1155
AlwNI CAGNNNCTG 1 cut(s) 953
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 2 cut(s) 218, 1169
AsuHPI GGTGA 4 cut(s) 172, 230, 764, 1127
BaeGI GKGCMC 1 cut(s) 55
BanII GRGCYC 4 cut(s) 180, 350, 708, 869
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 55, 621
BbvCI CCTCAGC 1 cut(s) 1061
BbvI GCAGC 1 cut(s) 640
BccI CCATC 3 cut(s) 98, 203, 491
BceAI ACGGC 2 cut(s) 340, 739
BciT130I CCWGG 2 cut(s) 709, 954
BciVI GTATCC 1 cut(s) 577
BclI TGATCA 2 cut(s) 714, 975
BcoDI GTCTC 3 cut(s) 251, 879, 1169
BfaI CTAG 2 cut(s) 26, 746
BfuI GTATCC 1 cut(s) 577
BisI GCNGC 1 cut(s) 654
BlsI GCNGC 1 cut(s) 655
Bme1390I CCNGG 2 cut(s) 709, 954
BmiI GGNNCC 4 cut(s) 349, 612, 766, 868
BmrFI CCNGG 2 cut(s) 709, 954
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 975
Bpu10I CCTNAGC 3 cut(s) 615, 1061, 1188
BpuEI CTTGAG 1 cut(s) 1208
Bsa29I ATCGAT 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 879
BsaJI CCNNGG 4 cut(s) 276, 499, 707, 952
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 881, 957
Bse1I ACTGG 1 cut(s) 1140
Bse3DI GCAATG 3 cut(s) 630, 771, 795
BseBI CCWGG 2 cut(s) 709, 954
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 4 cut(s) 276, 499, 707, 952
BseLI CCNNNNNNNGG 3 cut(s) 386, 881, 957
BseMI GCAATG 3 cut(s) 630, 771, 795
BseMII CTCAG 6 cut(s) 142, 322, 606, 894, 1038, 1052
BseNI ACTGG 1 cut(s) 1140
BseRI GAGGAG 1 cut(s) 1211
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 640
BsgI GTGCAG 2 cut(s) 639, 780
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 55, 621
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 3 cut(s) 386, 881, 957
BsmAI GTCTC 3 cut(s) 251, 879, 1169
BsmFI GGGAC 1 cut(s) 944
Bso31I GGTCTC 1 cut(s) 879
Bsp1286I GDGCHC 6 cut(s) 55, 180, 350, 621, 708, 869
Bsp143I GATC 4 cut(s) 161, 714, 975, 1147
Bsp19I CCATGG 1 cut(s) 499
BspACI CCGC 3 cut(s) 124, 525, 544
BspCNI CTCAG 6 cut(s) 141, 321, 607, 895, 1039, 1053
BspDI ATCGAT 1 cut(s) 264
BspLI GGNNCC 4 cut(s) 349, 612, 766, 868
BspPI GGATC 1 cut(s) 1155
BspQI GCTCTTC 2 cut(s) 696, 891
BspTNI GGTCTC 1 cut(s) 879
BsrDI GCAATG 3 cut(s) 630, 771, 795
BsrI ACTGG 1 cut(s) 1140
BssECI CCNNGG 4 cut(s) 276, 499, 707, 952
BssMI GATC 4 cut(s) 161, 714, 975, 1147
BssT1I CCWWGG 2 cut(s) 276, 499
Bst2UI CCWGG 2 cut(s) 709, 954
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 4 cut(s) 205, 449, 696, 891
BstDEI CTNAG 7 cut(s) 128, 308, 615, 903, 1047, 1061, 1188
BstDSI CCRYGG 1 cut(s) 499
BstKTI GATC 4 cut(s) 164, 717, 978, 1150
BstMAI GTCTC 3 cut(s) 251, 879, 1169
BstMBI GATC 4 cut(s) 161, 714, 975, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 773, 995
BstNI CCWGG 2 cut(s) 709, 954
BstSCI CCNGG 2 cut(s) 707, 952
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 640
BstV2I GAAGAC 1 cut(s) 146
Bsu15I ATCGAT 1 cut(s) 264
BsuI GTATCC 1 cut(s) 577
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 499
BtsI GCAGTG 2 cut(s) 259, 1098
BtsIMutI CAGTG 3 cut(s) 259, 656, 1098
CaiI CAGNNNCTG 1 cut(s) 953
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 1 cut(s) 505
Csp6I GTAC 4 cut(s) 71, 359, 601, 940
CviAII CATG 5 cut(s) 173, 343, 500, 934, 1151
CviQI GTAC 4 cut(s) 71, 359, 601, 940
DdeI CTNAG 7 cut(s) 128, 308, 615, 903, 1047, 1061, 1188
DpnI GATC 4 cut(s) 163, 716, 977, 1149
DpnII GATC 4 cut(s) 161, 714, 975, 1147
Eam1104I CTCTTC 4 cut(s) 205, 449, 696, 891
EarI CTCTTC 4 cut(s) 205, 449, 696, 891
EciI GGCGGA 1 cut(s) 514
Eco130I CCWWGG 2 cut(s) 276, 499
Eco24I GRGCYC 4 cut(s) 180, 350, 708, 869
Eco31I GGTCTC 1 cut(s) 879
Eco57I CTGAAG 2 cut(s) 720, 930
EcoRII CCWGG 2 cut(s) 707, 952
EcoT14I CCWWGG 2 cut(s) 276, 499
EcoT22I ATGCAT 1 cut(s) 1156
EcoT38I GRGCYC 4 cut(s) 180, 350, 708, 869
ErhI CCWWGG 2 cut(s) 276, 499
FaeI CATG 5 cut(s) 176, 346, 503, 937, 1154
FaqI GGGAC 1 cut(s) 944
FatI CATG 5 cut(s) 172, 342, 499, 933, 1150
FauNDI CATATG 3 cut(s) 185, 355, 637
FbaI TGATCA 2 cut(s) 714, 975
Fnu4HI GCNGC 1 cut(s) 654
FriOI GRGCYC 4 cut(s) 180, 350, 708, 869
Fsp4HI GCNGC 1 cut(s) 654
FspBI CTAG 2 cut(s) 26, 746
GluI GCNGC 1 cut(s) 654
GsuI CTGGAG 1 cut(s) 975
HgaI GACGC 1 cut(s) 505
Hin1II CATG 5 cut(s) 176, 346, 503, 937, 1154
HindIII AAGCTT 1 cut(s) 1003
HphI GGTGA 4 cut(s) 172, 230, 764, 1127
Hpy166II GTNNAC 2 cut(s) 53, 493
Hpy188I TCNGA 4 cut(s) 131, 311, 1048, 1182
Hpy188III TCNNGA 3 cut(s) 387, 614, 992
Hpy8I GTNNAC 2 cut(s) 53, 493
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 5 cut(s) 147, 538, 954, 1106, 1133
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 7 cut(s) 53, 246, 635, 656, 676, 761, 1154
HpyF10VI GCNNNNNNNGC 2 cut(s) 773, 995
HpyF3I CTNAG 7 cut(s) 128, 308, 615, 903, 1047, 1061, 1188
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 5 cut(s) 176, 346, 503, 937, 1154
Ksp22I TGATCA 2 cut(s) 714, 975
Kzo9I GATC 4 cut(s) 161, 714, 975, 1147
LguI GCTCTTC 2 cut(s) 696, 891
LmnI GCTCC 6 cut(s) 353, 506, 616, 764, 872, 994
Lsp1109I GCAGC 1 cut(s) 640
MaeI CTAG 2 cut(s) 26, 746
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 3 cut(s) 188, 719, 1079
MalI GATC 4 cut(s) 163, 716, 977, 1149
MboI GATC 4 cut(s) 161, 714, 975, 1147
MboII GAAGA 8 cut(s) 9, 85, 146, 192, 215, 436, 713, 908
MhlI GDGCHC 6 cut(s) 55, 180, 350, 621, 708, 869
MluCI AATT 5 cut(s) 218, 411, 661, 1169, 1193
MlyI GAGTC 5 cut(s) 178, 333, 435, 846, 1171
Mph1103I ATGCAT 1 cut(s) 1156
MslI CAYNNNNRTG 1 cut(s) 1071
MspR9I CCNGG 2 cut(s) 709, 954
MvaI CCWGG 2 cut(s) 709, 954
MwoI GCNNNNNNNGC 2 cut(s) 773, 995
NcoI CCATGG 1 cut(s) 499
NdeI CATATG 3 cut(s) 185, 355, 637
NdeII GATC 4 cut(s) 161, 714, 975, 1147
NlaIII CATG 5 cut(s) 176, 346, 503, 937, 1154
NlaIV GGNNCC 4 cut(s) 349, 612, 766, 868
NmuCI GTSAC 2 cut(s) 188, 719
NsiI ATGCAT 1 cut(s) 1156
PciSI GCTCTTC 2 cut(s) 696, 891
PfeI GAWTC 6 cut(s) 266, 312, 383, 521, 733, 967
PkrI GCNGC 1 cut(s) 655
PleI GAGTC 5 cut(s) 177, 333, 435, 845, 1171
PpsI GAGTC 5 cut(s) 177, 333, 435, 845, 1171
Psp6I CCWGG 2 cut(s) 707, 952
PspGI CCWGG 2 cut(s) 707, 952
PspN4I GGNNCC 4 cut(s) 349, 612, 766, 868
PstNI CAGNNNCTG 1 cut(s) 953
RsaI GTAC 4 cut(s) 72, 360, 602, 941
RsaNI GTAC 4 cut(s) 71, 359, 601, 940
RseI CAYNNNNRTG 1 cut(s) 1071
SapI GCTCTTC 2 cut(s) 696, 891
SatI GCNGC 1 cut(s) 654
Sau3AI GATC 4 cut(s) 161, 714, 975, 1147
SchI GAGTC 5 cut(s) 178, 333, 435, 846, 1171
ScrFI CCNGG 2 cut(s) 709, 954
SduI GDGCHC 6 cut(s) 55, 180, 350, 621, 708, 869
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
Sse9I AATT 5 cut(s) 218, 411, 661, 1169, 1193
SsiI CCGC 3 cut(s) 124, 525, 544
SspMI CTAG 2 cut(s) 26, 746
StyD4I CCNGG 2 cut(s) 707, 952
StyI CCWWGG 2 cut(s) 276, 499
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 551
TaqI TCGA 4 cut(s) 264, 519, 537, 597
TasI AATT 5 cut(s) 218, 411, 661, 1169, 1193
TatI WGTACW 2 cut(s) 70, 600
TfiI GAWTC 6 cut(s) 266, 312, 383, 521, 733, 967
TscAI CASTG 3 cut(s) 259, 663, 1098
TseFI GTSAC 2 cut(s) 188, 719
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 2 cut(s) 188, 719
TspDTI ATGAA 1 cut(s) 1148
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 3 cut(s) 259, 663, 1098
VneI GTGCAC 1 cut(s) 51
XapI RAATTY 2 cut(s) 218, 1169
XspI CTAG 2 cut(s) 26, 746
Zsp2I ATGCAT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.