Rmu_sc0035872.1_g000001

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035872.1
OG0000306
Physical Location & Seq
Reverse (-)
2 .. 837
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035872.1_g000001.1.cds

Sequence Viewer

Length: 836 bp
ctgggttctccttataaagcaccattgcttgatgatccagaatctggagtctcatccaaagatgtcaccatttcgaaaaaccctttgatctcagccagaatcttcttccctaaactcgacgaagagaagccacacaagaagctccccgtcttggtttactgccatggtggaggtttctgcatcgagtccgccttctcttttgatcaccaccggtttctcgacggcttggtgtcccaagctcaagttgttgctgtttctgtggagtacaggatggctcctgagcaccctcttcctgcctgctatgaagattgttgggctgccctgcaatgggttgcttcacacttcattgaaaatggtatcagtgaggagccttggttgatgaatcacggcaacccggaacgttttttccttggtggtgatagtgcaggagctaacattgctcataatctggcaatgagagttggcaaagagggcttgcctggtggtttgaagatattgggaacctctcttacacacccctacttctggggttccaagcctattgcggaagacccttgtaaagaacctgagaaggatttggcagctatgctttggaactttgcgtacccctcagcacctggtggacttgataatccattgatcaatcctcttgctcctgaagcaccaagcttggcaggacttgggtgttctaggttgtttgtgagcgtctcggaacatgatgggctgaagtttagaggcattcggtactacgatgccgtgaagaaaagtgggtgggaaggagaggcagagctggtggacgtggaaggagaggctcatgcatttcatattttgaaatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

278

Amino Acids

30.38

Weight (kDa)

5.43

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 44
AciI CCGC 2 cut(s) 189, 545
AclI AACGTT 1 cut(s) 400
AclWI GGATC 1 cut(s) 29
AcuI CTGAAG 2 cut(s) 678, 746
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 3 cut(s) 266, 605, 746
AfiI CCNNNNNNNGG 5 cut(s) 44, 151, 327, 328, 525
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 3 cut(s) 350, 490, 832
AjiI CACGTC 1 cut(s) 799
AjnI CCWGG 2 cut(s) 478, 616
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 6 cut(s) 142, 239, 431, 584, 669, 790
AluI AGCT 6 cut(s) 142, 239, 431, 584, 669, 790
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 55, 712
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 2 cut(s) 44, 617
ApeKI GCWGC 2 cut(s) 317, 581
AsiGI ACCGGT 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 58, 197, 428
AsuII TTCGAA 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 610
BbvI GCAGC 2 cut(s) 304, 593
BccI CCATC 2 cut(s) 265, 713
BceAI ACGGC 3 cut(s) 238, 403, 740
BciT130I CCWGG 2 cut(s) 480, 618
BclI TGATCA 2 cut(s) 202, 639
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 55, 712
BfaI CTAG 1 cut(s) 690
BisI GCNGC 2 cut(s) 318, 582
BlsI GCNGC 2 cut(s) 319, 583
Bme1390I CCNGG 3 cut(s) 395, 480, 618
BmgBI CACGTC 1 cut(s) 799
BmiI GGNNCC 4 cut(s) 276, 369, 502, 532
BmrFI CCNGG 3 cut(s) 395, 480, 618
BmsI GCATC 2 cut(s) 189, 742
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 2 cut(s) 279, 610
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 163, 371, 409
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 151, 327, 328, 525
Bse118I RCCGGY 1 cut(s) 210
Bse3DI GCAATG 4 cut(s) 23, 332, 435, 459
BseBI CCWGG 2 cut(s) 480, 618
BseDI CCNNGG 3 cut(s) 163, 371, 409
BseGI GGATG 2 cut(s) 53, 276
BseLI CCNNNNNNNGG 5 cut(s) 44, 151, 327, 328, 525
BseMI GCAATG 4 cut(s) 23, 332, 435, 459
BseMII CTCAG 4 cut(s) 105, 270, 558, 624
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 2 cut(s) 304, 593
BsgI GTGCAG 1 cut(s) 444
BshTI ACCGGT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 211, 395
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 5 cut(s) 44, 151, 327, 328, 525
BsmAI GTCTC 2 cut(s) 55, 712
BsmBI CGTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 738
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 4 cut(s) 34, 87, 202, 639
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 2 cut(s) 189, 545
BspCNI CTCAG 4 cut(s) 104, 271, 559, 623
BspLI GGNNCC 4 cut(s) 276, 369, 502, 532
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 74
BsrDI GCAATG 4 cut(s) 23, 332, 435, 459
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 163, 371, 409
BssMI GATC 4 cut(s) 34, 87, 202, 639
BssT1I CCWWGG 3 cut(s) 163, 371, 409
Bst2UI CCWGG 2 cut(s) 480, 618
Bst6I CTCTTC 2 cut(s) 117, 294
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 298, 476
BstDEI CTNAG 4 cut(s) 91, 279, 567, 610
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 53, 276
BstKTI GATC 4 cut(s) 37, 90, 205, 642
BstMAI GTCTC 2 cut(s) 55, 712
BstMBI GATC 4 cut(s) 34, 87, 202, 639
BstMWI GCNNNNNNNGC 3 cut(s) 437, 471, 659
BstNI CCWGG 2 cut(s) 480, 618
BstSCI CCNGG 3 cut(s) 393, 478, 616
BstV1I GCAGC 2 cut(s) 304, 593
BstV2I GAAGAC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 163
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 2 cut(s) 53, 276
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 298, 476
CaiI CAGNNNCTG 2 cut(s) 44, 617
Cfr10I RCCGGY 1 cut(s) 210
CseI GACGC 1 cut(s) 694
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 3 cut(s) 265, 604, 745
CspAI ACCGGT 1 cut(s) 210
CviAII CATG 3 cut(s) 164, 716, 815
CviQI GTAC 3 cut(s) 265, 604, 745
DdeI CTNAG 4 cut(s) 91, 279, 567, 610
DpnI GATC 4 cut(s) 36, 89, 204, 641
DpnII GATC 4 cut(s) 34, 87, 202, 639
DraIII CACNNNGTG 1 cut(s) 620
Eam1104I CTCTTC 2 cut(s) 117, 294
EarI CTCTTC 2 cut(s) 117, 294
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 163, 371, 409
Eco57I CTGAAG 2 cut(s) 678, 746
EcoRII CCWGG 2 cut(s) 478, 616
EcoT14I CCWWGG 3 cut(s) 163, 371, 409
EcoT22I ATGCAT 1 cut(s) 820
ErhI CCWWGG 3 cut(s) 163, 371, 409
Esp3I CGTCTC 1 cut(s) 712
FaeI CATG 3 cut(s) 167, 719, 818
FaiI YATR 8 cut(s) 15, 165, 303, 444, 587, 717, 816, 825
FaqI GGGAC 1 cut(s) 217
FatI CATG 3 cut(s) 163, 715, 814
FbaI TGATCA 2 cut(s) 202, 639
Fnu4HI GCNGC 2 cut(s) 318, 582
FokI GGATG 2 cut(s) 40, 283
Fsp4HI GCNGC 2 cut(s) 318, 582
FspBI CTAG 1 cut(s) 690
GluI GCNGC 2 cut(s) 318, 582
GsuI CTGGAG 1 cut(s) 66
HapII CCGG 2 cut(s) 211, 395
HgaI GACGC 1 cut(s) 694
Hin1II CATG 3 cut(s) 167, 719, 818
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 5 cut(s) 41, 48, 99, 185, 382
HpaII CCGG 2 cut(s) 211, 395
HphI GGTGA 3 cut(s) 58, 197, 428
Hpy166II GTNNAC 3 cut(s) 157, 623, 796
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 5 cut(s) 38, 45, 218, 278, 656
Hpy8I GTNNAC 3 cut(s) 157, 623, 796
Hpy99I CGWCG 2 cut(s) 122, 224
HpyAV CCTTC 4 cut(s) 202, 565, 770, 797
HpyCH4IV ACGT 2 cut(s) 400, 798
HpyCH4V TGCA 4 cut(s) 180, 325, 425, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 437, 471, 659
HpyF3I CTNAG 4 cut(s) 91, 279, 567, 610
HpySE526I ACGT 2 cut(s) 400, 798
Hsp92II CATG 3 cut(s) 167, 719, 818
Ksp22I TGATCA 2 cut(s) 202, 639
Kzo9I GATC 4 cut(s) 34, 87, 202, 639
LmnI GCTCC 5 cut(s) 147, 280, 367, 428, 658
Lsp1109I GCAGC 2 cut(s) 304, 593
LweI GCATC 2 cut(s) 189, 742
MabI ACCWGGT 1 cut(s) 616
MaeI CTAG 1 cut(s) 690
MaeII ACGT 2 cut(s) 400, 798
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 36, 89, 204, 641
MboI GATC 4 cut(s) 34, 87, 202, 639
MboII GAAGA 8 cut(s) 94, 97, 134, 281, 317, 502, 560, 772
MhlI GDGCHC 1 cut(s) 285
MlyI GAGTC 2 cut(s) 57, 194
Mph1103I ATGCAT 1 cut(s) 820
MspI CCGG 2 cut(s) 211, 395
MspR9I CCNGG 3 cut(s) 395, 480, 618
Mva1269I GAATGC 1 cut(s) 738
MvaI CCWGG 2 cut(s) 480, 618
MwoI GCNNNNNNNGC 3 cut(s) 437, 471, 659
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 163
NdeII GATC 4 cut(s) 34, 87, 202, 639
NlaIII CATG 3 cut(s) 167, 719, 818
NlaIV GGNNCC 4 cut(s) 276, 369, 502, 532
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 820
NspV TTCGAA 1 cut(s) 74
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 41, 99, 382
PflMI CCANNNNNTGG 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 2 cut(s) 319, 583
PleI GAGTC 2 cut(s) 56, 193
PpsI GAGTC 2 cut(s) 56, 193
PsiI TTATAA 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 478, 616
PspGI CCWGG 2 cut(s) 478, 616
PspN4I GGNNCC 4 cut(s) 276, 369, 502, 532
PsrI GAACNNNNNNTAC 4 cut(s) 493, 525, 587, 619
PstNI CAGNNNCTG 2 cut(s) 44, 617
RsaI GTAC 3 cut(s) 266, 605, 746
RsaNI GTAC 3 cut(s) 265, 604, 745
SatI GCNGC 2 cut(s) 318, 582
Sau3AI GATC 4 cut(s) 34, 87, 202, 639
SchI GAGTC 2 cut(s) 57, 194
ScrFI CCNGG 3 cut(s) 395, 480, 618
SduI GDGCHC 1 cut(s) 285
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 2 cut(s) 189, 742
SfuI TTCGAA 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SsiI CCGC 2 cut(s) 189, 545
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 3 cut(s) 393, 478, 616
StyI CCWWGG 3 cut(s) 163, 371, 409
TaiI ACGT 2 cut(s) 403, 801
TaqI TCGA 4 cut(s) 74, 117, 183, 219
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 3 cut(s) 41, 99, 382
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 317, 581
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 4 cut(s) 318, 334, 395, 812
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 44
XspI CTAG 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.