Rw4G017590

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000306
Physical Location & Seq
Forward (+)
39561414 .. 39562388
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017590.1

Sequence Viewer

Length: 975 bp
ATGAGTTCCACCACCACCAAAGAAATCGCCGCAGAGATCCCCAATCTCATCAAGCATTACAAAGATGGCACAGTCGAACGCCTCTTCGGCTCTCCACACGTTCCCCAATCTCTTAACGACCCCGATACTGGTGTCTCCTCCAAAGACATCACCATCTCACACAATCCCTTAATCTCTGCTCGCCTCTACCTCCCTCAAAACCAAACCAAAAAGCTTCCCATCTTGCTCTACTTCCACGGCGGCGGTTTCTGCGTCGAGTCCGCCTTCTCCTCCCTCGACCACCGCTACCTCAACCGCCTGGTCTCGGAAGCTCAAGTCATTTCTGTCTCAGTAGAGTACAGGCTGGCCCCGGAAAGCCCTCTTCCTGCTGCTTATGAAGATTGCTGGGCCGCTCTTCAGTGGGTTGCTTCTCACTCACTCAATGAAGATGATACTTCTCACAAAGAGCCGTGGCTAGCCGATTTCGGGGACTTTGATAGAGTTTACATTGGTGGAGACAGTGCTGGAGGGAACCTTGCACATAACATAGCTATGAGAGCAGGGACTGAGAGCTTACCTGGTGGGGTGAAGATTTTGGGGGCTATTCTGTCCCACCCGTACTTTTGGGGGTCCAAGCCAATCGGGTCGGAGCCTAAAGGTGAAGACAATAAAAAGTCCATGCCTTATCTGGTTTGGAACTTAGCTTATCCTTCTGCTGATGGAGGCATTGACAATCCGTTGATTAATCCGATGGTTTCGGGTGCTCCGAGTTTGGCCGGGCTTGGGTGCTCTAGGCTTGTTGTGTGTGTTGCTGGCAAGGATGAGCTGAGGGATCGAAGCGTCTGGTATTATGAGTTGGTGAAGGAAAGTGGATGGAAAGGAGAAGTGGAGCTGTTTGAAGTGGAAGGAGAGGAGCATTGCTTTCATATCTTGTATGAGAAAGAGACTGAGAATGTAAAGAAAATGATCAAACGGTTAGCTGATTTTCTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

324

Amino Acids

35.75

Weight (kDa)

5.31

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 62 - 186 3.5e-14 BD-FAE
COesterase PF00135 63 - 177 7.3e-08 Carboxylesterase family
Abhydrolase_3 PF07859 75 - 302 5.9e-51 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 392
AciI CCGC 7 cut(s) 30, 240, 243, 261, 283, 295, 390
AclWI GGATC 2 cut(s) 31, 819
AcoI YGGCCR 1 cut(s) 753
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 2 cut(s) 338, 599
AfiI CCNNNNNNNGG 4 cut(s) 128, 304, 465, 762
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 878
AjnI CCWGG 2 cut(s) 297, 556
AluBI AGCT 8 cut(s) 214, 311, 530, 552, 683, 805, 871, 959
AluI AGCT 8 cut(s) 214, 311, 530, 552, 683, 805, 871, 959
Alw21I GWGCWC 2 cut(s) 745, 770
Alw26I GTCTC 5 cut(s) 139, 307, 331, 489, 917
AlwI GGATC 2 cut(s) 31, 819
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 3 cut(s) 345, 387, 753
ApeKI GCWGC 1 cut(s) 368
AseI ATTAAT 1 cut(s) 723
AspS9I GGNCC 3 cut(s) 346, 387, 609
AsuC2I CCSGG 2 cut(s) 350, 757
AsuHPI GGTGA 4 cut(s) 142, 577, 650, 850
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 609
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 2 cut(s) 745, 770
BbvCI CCTCAGC 1 cut(s) 806
BbvI GCAGC 1 cut(s) 355
BccI CCATC 6 cut(s) 59, 161, 227, 692, 724, 846
BceAI ACGGC 2 cut(s) 253, 433
BciT130I CCWGG 2 cut(s) 299, 558
BclI TGATCA 1 cut(s) 945
BcnI CCSGG 2 cut(s) 350, 757
BcoDI GTCTC 5 cut(s) 139, 307, 331, 489, 917
BfaI CTAG 4 cut(s) 455, 771, 968, 973
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 4 cut(s) 30, 241, 369, 390
BlsI GCNGC 4 cut(s) 31, 242, 370, 391
Bme1390I CCNGG 4 cut(s) 299, 350, 558, 757
Bme18I GGWCC 1 cut(s) 609
BmgT120I GGNCC 3 cut(s) 346, 387, 609
BmiI GGNNCC 4 cut(s) 348, 512, 610, 630
BmrFI CCNGG 4 cut(s) 299, 350, 558, 757
BmtI GCTAGC 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 806
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 2 cut(s) 350, 757
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 3 cut(s) 235, 348, 449
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 304, 465, 762
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 895
BseBI CCWGG 2 cut(s) 299, 558
BseDI CCNNGG 3 cut(s) 235, 348, 449
BseGI GGATG 2 cut(s) 805, 857
BseLI CCNNNNNNNGG 4 cut(s) 128, 304, 465, 762
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 4 cut(s) 342, 537, 797, 918
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 3 cut(s) 127, 259, 905
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 384
BshFI GGCC 3 cut(s) 347, 389, 755
BsiHKAI GWGCWC 2 cut(s) 745, 770
BsiSI CCGG 2 cut(s) 350, 756
BslFI GGGAC 3 cut(s) 482, 556, 574
BslI CCNNNNNNNGG 4 cut(s) 128, 304, 465, 762
BsmAI GTCTC 5 cut(s) 139, 307, 331, 489, 917
BsmFI GGGAC 3 cut(s) 482, 556, 574
BsnI GGCC 3 cut(s) 347, 389, 755
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 745, 770
Bsp143I GATC 3 cut(s) 36, 811, 945
BspACI CCGC 7 cut(s) 30, 240, 243, 261, 283, 295, 390
BspANI GGCC 3 cut(s) 347, 389, 755
BspCNI CTCAG 4 cut(s) 341, 538, 798, 919
BspLI GGNNCC 4 cut(s) 348, 512, 610, 630
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 2 cut(s) 31, 819
BspQI GCTCTTC 1 cut(s) 399
BspTNI GGTCTC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 895
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 235, 348, 449
BssMI GATC 3 cut(s) 36, 811, 945
Bst2UI CCWGG 2 cut(s) 299, 558
Bst4CI ACNGT 3 cut(s) 73, 500, 954
Bst6I CTCTTC 3 cut(s) 89, 366, 399
BstC8I GCNNGC 4 cut(s) 181, 345, 456, 793
BstDEI CTNAG 5 cut(s) 328, 546, 679, 806, 927
BstDSI CCRYGG 2 cut(s) 235, 449
BstF5I GGATG 2 cut(s) 805, 857
BstKTI GATC 3 cut(s) 39, 814, 948
BstMAI GTCTC 5 cut(s) 139, 307, 331, 489, 917
BstMBI GATC 3 cut(s) 36, 811, 945
BstMWI GCNNNNNNNGC 3 cut(s) 87, 249, 536
BstNI CCWGG 2 cut(s) 299, 558
BstSCI CCNGG 4 cut(s) 297, 348, 556, 755
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 3 cut(s) 347, 389, 755
BtgI CCRYGG 2 cut(s) 235, 449
BtsCI GGATG 2 cut(s) 805, 857
BtsIMutI CAGTG 2 cut(s) 404, 505
Cac8I GCNNGC 4 cut(s) 181, 345, 456, 793
CaiI CAGNNNCTG 1 cut(s) 545
Cfr13I GGNCC 3 cut(s) 346, 387, 609
CseI GACGC 2 cut(s) 241, 808
CsiI ACCWGGT 1 cut(s) 556
Csp6I GTAC 2 cut(s) 337, 598
CviAII CATG 1 cut(s) 658
CviQI GTAC 2 cut(s) 337, 598
DdeI CTNAG 5 cut(s) 328, 546, 679, 806, 927
DpnI GATC 3 cut(s) 38, 813, 947
DpnII GATC 3 cut(s) 36, 811, 945
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 3 cut(s) 89, 366, 399
EarI CTCTTC 3 cut(s) 89, 366, 399
EciI GGCGGA 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 297, 556
FaeI CATG 1 cut(s) 661
FaiI YATR 8 cut(s) 375, 522, 527, 533, 659, 831, 906, 915
FaqI GGGAC 3 cut(s) 482, 556, 574
FatI CATG 1 cut(s) 657
FbaI TGATCA 1 cut(s) 945
Fnu4HI GCNGC 4 cut(s) 30, 241, 369, 390
FokI GGATG 2 cut(s) 812, 864
Fsp4HI GCNGC 4 cut(s) 30, 241, 369, 390
FspBI CTAG 4 cut(s) 455, 771, 968, 973
GluI GCNGC 4 cut(s) 30, 241, 369, 390
GsaI CCCAGC 1 cut(s) 388
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 3 cut(s) 347, 389, 755
HapII CCGG 2 cut(s) 350, 756
HgaI GACGC 2 cut(s) 241, 808
Hin1II CATG 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 350, 756
HphI GGTGA 4 cut(s) 142, 577, 650, 850
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 4 cut(s) 307, 628, 729, 747
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 4 cut(s) 274, 699, 835, 878
HpyCH4III ACNGT 3 cut(s) 73, 500, 954
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 249, 536
HpyF3I CTNAG 5 cut(s) 328, 546, 679, 806, 927
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 945
Kzo9I GATC 3 cut(s) 36, 811, 945
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 4 cut(s) 628, 748, 868, 892
Lsp1109I GCAGC 1 cut(s) 355
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 4 cut(s) 455, 771, 968, 973
MaeII ACGT 1 cut(s) 99
MalI GATC 3 cut(s) 38, 813, 947
MbiI CCGCTC 1 cut(s) 392
MboI GATC 3 cut(s) 36, 811, 945
MboII GAAGA 7 cut(s) 76, 353, 386, 389, 437, 580, 653
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 745, 770
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 606
MseI TTAA 3 cut(s) 114, 170, 723
MslI CAYNNNNRTG 1 cut(s) 530
MspI CCGG 2 cut(s) 350, 756
MspR9I CCNGG 4 cut(s) 299, 350, 558, 757
MvaI CCWGG 2 cut(s) 299, 558
MwoI GCNNNNNNNGC 3 cut(s) 87, 249, 536
NciI CCSGG 2 cut(s) 350, 757
NdeII GATC 3 cut(s) 36, 811, 945
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 1 cut(s) 661
NlaIV GGNNCC 4 cut(s) 348, 512, 610, 630
PciSI GCTCTTC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 743
PkrI GCNGC 4 cut(s) 31, 242, 370, 391
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 723
Psp6I CCWGG 2 cut(s) 297, 556
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 2 cut(s) 297, 556
PspN4I GGNNCC 4 cut(s) 348, 512, 610, 630
PspPI GGNCC 3 cut(s) 346, 387, 609
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 2 cut(s) 338, 599
RsaNI GTAC 2 cut(s) 337, 598
RseI CAYNNNNRTG 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 114, 170, 723
SatI GCNGC 4 cut(s) 30, 241, 369, 390
Sau3AI GATC 3 cut(s) 36, 811, 945
Sau96I GGNCC 3 cut(s) 346, 387, 609
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 4 cut(s) 299, 350, 558, 757
SduI GDGCHC 2 cut(s) 745, 770
SexAI ACCWGGT 1 cut(s) 556
SinI GGWCC 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
SsiI CCGC 7 cut(s) 30, 240, 243, 261, 283, 295, 390
SspMI CTAG 4 cut(s) 455, 771, 968, 973
StyD4I CCNGG 4 cut(s) 297, 348, 556, 755
TaaI ACNGT 3 cut(s) 73, 500, 954
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 75, 255, 276, 814
TatI WGTACW 1 cut(s) 336
TauI GCSGC 3 cut(s) 32, 243, 392
Tru1I TTAA 3 cut(s) 114, 170, 723
Tru9I TTAA 3 cut(s) 114, 170, 723
TscAI CASTG 2 cut(s) 404, 505
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 390, 438, 893
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 404, 505
VpaK11BI GGWCC 1 cut(s) 609
VspI ATTAAT 1 cut(s) 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XspI CTAG 4 cut(s) 455, 771, 968, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.