Rroxscaffold_4G00310390

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000306
Physical Location & Seq
Forward (+)
32352468 .. 32353454
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310390.1

Sequence Viewer

Length: 987 bp
ATGGCTTCCACCGGCAAAGAAATAGCGTCAGAGCTCCTTCCTTTCATCAGAGTTTACAAAGATGGCACCGTCGAACGCCTCATGGGATCTCCCTATGTGTCCCCATCTCCTCATGACCCAGAATACGGCGTCTGTTCCAAGGACATCACCATCTCTGACAACCCGAAAATCTCAGCTCGCCTTTTCTGCCCTCAAACCCTAAACCAACATGTCCCAAACCAAAAGCTTCCGGTTTTGGTCTACTTCCACGGCGGTGGTTTTTGCTTTGAATCTGCTTTCTCGTCTGATCACCACCGCTTCCTCAACCGCCTAGTCTCGAAAGCCCAAGTCGTCGCCATCTCAGTTGAGTACAGACTTGCCCCAGAAGTCCCACTTCCCTTTTGTTACCAAGACTGCTGGGCTGCTCTTCAATGGGTCGCTTTGCATACTGAAAATGAAGAGCTTGTTAGTGCTATTAACAAGGAGCCATGGCTAGCCAGCTATGGCGATTTCGATAGAGTTTACATTGGTGGTGACAGTTCAGGAAGTAACATTGTACATAACATAGCAATGAAGGCCGGGACTGATAGCTTGGGTGTGGAAATCGTGGGGGCATTTTTGTCCCACCCCTACCTTTTGAGTTCCAAGCCACTGGCGTTGGAGCCAAAAGGCGAAGAGTTCGAGAAGTATCTGCCTTGCCGGATTTGGGGGATTTTGAATCCGTCGGCTCCGGGAGGTCTTGATAATCCGATGGTTAACCCGGCAGGTTTGGGTGCTCCAAGCCTGGCTGGGCTTGGGTGCTCTAAGCTGCTTGTGTGTGTTTCTAGCAATGATGAGTTGAGGGATAGAGGTGTTTGGTATTATAATTTGGTCATGGAGAGTGGGTGGAAAGGAGAAGTGGAGTTGTTTGAAGTCGAAGGAGAGGGACACGCTTTCCATATTTTCAGTGTGGCCGAGACCGATCATGTTAAGAAAATCATCAACAAATTGGCTTCTTTTCTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

328

Amino Acids

36.04

Weight (kDa)

5.37

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 66 - 121 6.6e-08 Carboxylesterase family
BD-FAE PF20434 73 - 145 7.4e-09 BD-FAE
Abhydrolase_3 PF07859 79 - 306 9.3e-43 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 734
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 240
AciI CCGC 3 cut(s) 252, 295, 307
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 930
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 350, 537
AfiI CCNNNNNNNGG 2 cut(s) 125, 685
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 4 cut(s) 269, 410, 697, 890
AjnI CCWGG 1 cut(s) 762
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 7 cut(s) 34, 176, 226, 442, 480, 570, 787
AluI AGCT 7 cut(s) 34, 176, 226, 442, 480, 570, 787
Alw21I GWGCWC 3 cut(s) 36, 757, 782
Alw26I GTCTC 2 cut(s) 319, 929
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 555, 930
ApeKI GCWGC 2 cut(s) 401, 787
AsuC2I CCSGG 3 cut(s) 559, 711, 740
AsuHPI GGTGA 3 cut(s) 139, 281, 524
AsuNHI GCTAGC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 3 cut(s) 36, 757, 782
BbvI GCAGC 2 cut(s) 388, 774
BccI CCATC 5 cut(s) 56, 112, 158, 344, 724
BceAI ACGGC 2 cut(s) 142, 265
BciT130I CCWGG 1 cut(s) 764
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 3 cut(s) 559, 711, 740
BcoDI GTCTC 2 cut(s) 319, 929
BfaI CTAG 3 cut(s) 311, 473, 804
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 2 cut(s) 402, 788
BlsI GCNGC 2 cut(s) 403, 789
Bme1390I CCNGG 4 cut(s) 559, 711, 740, 764
BmiI GGNNCC 4 cut(s) 67, 465, 642, 708
BmrFI CCNGG 4 cut(s) 559, 711, 740, 764
BmtI GCTAGC 1 cut(s) 476
BpuMI CCSGG 3 cut(s) 559, 711, 740
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 3 cut(s) 138, 247, 467
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 685
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 2 cut(s) 555, 814
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 3 cut(s) 138, 247, 467
BseLI CCNNNNNNNGG 2 cut(s) 125, 685
BseMI GCAATG 2 cut(s) 555, 814
BseMII CTCAG 2 cut(s) 186, 354
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 388, 774
BseYI CCCAGC 2 cut(s) 396, 767
BshFI GGCC 2 cut(s) 557, 932
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 3 cut(s) 36, 757, 782
BsiSI CCGG 6 cut(s) 12, 230, 558, 679, 710, 740
BslFI GGGAC 6 cut(s) 85, 197, 353, 574, 586, 918
BslI CCNNNNNNNGG 2 cut(s) 125, 685
BsmAI GTCTC 2 cut(s) 319, 929
BsmFI GGGAC 6 cut(s) 85, 197, 353, 574, 586, 918
BsnI GGCC 2 cut(s) 557, 932
Bso31I GGTCTC 1 cut(s) 929
Bsp1286I GDGCHC 3 cut(s) 36, 757, 782
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 3 cut(s) 86, 286, 940
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 3 cut(s) 252, 295, 307
BspANI GGCC 2 cut(s) 557, 932
BspCNI CTCAG 2 cut(s) 185, 353
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 4 cut(s) 67, 465, 642, 708
BspMI ACCTGC 1 cut(s) 734
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 2 cut(s) 411, 432
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 929
BsrDI GCAATG 2 cut(s) 555, 814
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 138, 247, 467
BssMI GATC 3 cut(s) 86, 286, 940
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 138, 467
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 2 cut(s) 70, 518
Bst6I CTCTTC 3 cut(s) 411, 432, 648
BstACI GRCGYC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 178, 474, 478
BstDEI CTNAG 3 cut(s) 172, 340, 783
BstDSI CCRYGG 2 cut(s) 247, 467
BstKTI GATC 3 cut(s) 89, 289, 943
BstMAI GTCTC 2 cut(s) 319, 929
BstMBI GATC 3 cut(s) 86, 286, 940
BstMWI GCNNNNNNNGC 2 cut(s) 186, 554
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 557, 709, 738, 762
BstV1I GCAGC 2 cut(s) 388, 774
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 2 cut(s) 254, 631
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 2 cut(s) 557, 932
BtgI CCRYGG 2 cut(s) 247, 467
BtsIMutI CAGTG 2 cut(s) 629, 931
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 178, 474, 478
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 11
CseI GACGC 2 cut(s) 15, 118
Csp6I GTAC 2 cut(s) 349, 536
CspCI CAANNNNNGTGG 2 cut(s) 618, 653
CviAII CATG 6 cut(s) 82, 113, 209, 468, 853, 944
CviQI GTAC 2 cut(s) 349, 536
DdeI CTNAG 3 cut(s) 172, 340, 783
DpnI GATC 3 cut(s) 88, 288, 942
DpnII GATC 3 cut(s) 86, 286, 940
EaeI YGGCCR 1 cut(s) 930
Eam1104I CTCTTC 3 cut(s) 411, 432, 648
EarI CTCTTC 3 cut(s) 411, 432, 648
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 138, 467
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 929
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 2 cut(s) 138, 467
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 138, 467
FaeI CATG 6 cut(s) 85, 116, 212, 471, 856, 947
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 6 cut(s) 85, 197, 353, 574, 586, 918
FatI CATG 6 cut(s) 81, 112, 208, 467, 852, 943
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 402, 788
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 402, 788
FspBI CTAG 3 cut(s) 311, 473, 804
GluI GCNGC 2 cut(s) 402, 788
GsaI CCCAGC 2 cut(s) 400, 771
HaeIII GGCC 2 cut(s) 557, 932
HapII CCGG 6 cut(s) 12, 230, 558, 679, 710, 740
HgaI GACGC 2 cut(s) 15, 118
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 6 cut(s) 85, 116, 212, 471, 856, 947
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 269, 697
HpaI GTTAAC 1 cut(s) 736
HpaII CCGG 6 cut(s) 12, 230, 558, 679, 710, 740
HphI GGTGA 3 cut(s) 139, 281, 524
Hpy166II GTNNAC 4 cut(s) 55, 241, 502, 736
Hpy188I TCNGA 5 cut(s) 31, 50, 157, 286, 729
Hpy188III TCNNGA 5 cut(s) 113, 316, 522, 661, 719
Hpy8I GTNNAC 4 cut(s) 55, 241, 502, 736
Hpy99I CGWCG 3 cut(s) 74, 335, 706
HpyAV CCTTC 3 cut(s) 47, 547, 890
HpyCH4III ACNGT 2 cut(s) 70, 518
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 554
HpyF3I CTNAG 3 cut(s) 172, 340, 783
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 6 cut(s) 85, 116, 212, 471, 856, 947
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 736
Kzo9I GATC 3 cut(s) 86, 286, 940
LguI GCTCTTC 2 cut(s) 411, 432
LmnI GCTCC 5 cut(s) 39, 463, 640, 712, 760
Lsp1109I GCAGC 2 cut(s) 388, 774
MaeI CTAG 3 cut(s) 311, 473, 804
MaeIII GTNAC 3 cut(s) 383, 512, 527
MalI GATC 3 cut(s) 88, 288, 942
MboI GATC 3 cut(s) 86, 286, 940
MboII GAAGA 3 cut(s) 398, 449, 665
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 3 cut(s) 36, 757, 782
MluCI AATT 2 cut(s) 844, 965
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 8 cut(s) 89, 120, 201, 311, 707, 813, 821, 895
MseI TTAA 3 cut(s) 456, 735, 948
MslI CAYNNNNRTG 2 cut(s) 252, 548
MspI CCGG 6 cut(s) 12, 230, 558, 679, 710, 740
MspR9I CCNGG 4 cut(s) 559, 711, 740, 764
MvaI CCWGG 1 cut(s) 764
MwoI GCNNNNNNNGC 2 cut(s) 186, 554
NciI CCSGG 3 cut(s) 559, 711, 740
NcoI CCATGG 1 cut(s) 467
NdeII GATC 3 cut(s) 86, 286, 940
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 6 cut(s) 85, 116, 212, 471, 856, 947
NlaIV GGNNCC 4 cut(s) 67, 465, 642, 708
NmeAIII GCCGAG 1 cut(s) 958
NmuCI GTSAC 1 cut(s) 512
NspI RCATGY 1 cut(s) 212
OliI CACNNNNGTG 1 cut(s) 252
PagI TCATGA 1 cut(s) 112
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 2 cut(s) 411, 432
PfeI GAWTC 2 cut(s) 269, 697
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 2 cut(s) 403, 789
PscI ACATGT 1 cut(s) 208
PsiI TTATAA 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 762
PspFI CCCAGC 2 cut(s) 396, 767
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 4 cut(s) 67, 465, 642, 708
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 2 cut(s) 350, 537
RsaNI GTAC 2 cut(s) 349, 536
RseI CAYNNNNRTG 2 cut(s) 252, 548
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 411, 432
SaqAI TTAA 3 cut(s) 456, 735, 948
SatI GCNGC 2 cut(s) 402, 788
Sau3AI GATC 3 cut(s) 86, 286, 940
ScrFI CCNGG 4 cut(s) 559, 711, 740, 764
SduI GDGCHC 3 cut(s) 36, 757, 782
SmiMI CAYNNNNRTG 2 cut(s) 252, 548
Sse9I AATT 2 cut(s) 844, 965
SsiI CCGC 3 cut(s) 252, 295, 307
SspMI CTAG 3 cut(s) 311, 473, 804
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 4 cut(s) 557, 709, 738, 762
StyI CCWWGG 2 cut(s) 138, 467
TaaI ACNGT 2 cut(s) 70, 518
TaqI TCGA 5 cut(s) 72, 317, 492, 660, 894
TaqII GACCGA 1 cut(s) 953
TasI AATT 2 cut(s) 844, 965
TatI WGTACW 2 cut(s) 348, 535
TfiI GAWTC 2 cut(s) 269, 697
Tru1I TTAA 3 cut(s) 456, 735, 948
Tru9I TTAA 3 cut(s) 456, 735, 948
TscAI CASTG 2 cut(s) 636, 931
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 2 cut(s) 401, 787
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 34, 450, 566
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 2 cut(s) 636, 931
XceI RCATGY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 3 cut(s) 311, 473, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.