Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033477.1

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1720

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

gtccgcttcttgagattcgcgtccacgtcaaggttctcgactccacattctctgccttcgacgccgatcacgccgccgccaaggtcgccgcccgagcccttgtcgaactcgctaagaacgaggacaatctgaaagacttagtggaatgcggagcagttccggctctagttaatcaactacgggcgccgccgccggagagaggtggaagccactgtccgattccgtctgagcacgaggtcgagaaagaaagtgctttcgcgcttaatctcatcgccgttaagccggaaaatcaacatctcatagttgatgctggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

104

Amino Acids

11.13

Weight (kDa)

5.24

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccII	CGCG	2 cut(s)	20, 259
AciI	CCGC	7 cut(s)	4, 74, 77, 89, 149, 187, 190
AcyI	GRCGYC	2 cut(s)	62, 184
AfiI	CCNNNNNNNGG	2 cut(s)	30, 199
AjiI	CACGTC	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	186, 261
AvaI	CYCGRG	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	5 cut(s)	74, 77, 89, 187, 190
BlsI	GCNGC	5 cut(s)	75, 78, 90, 188, 191
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	185
BmsI	GCATC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	62, 184
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 199
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	30, 199
BseMII	CTCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	20, 259
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	160, 193, 283
BslI	CCNNNNNNNGG	2 cut(s)	30, 199
BsmI	GAATGC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	99, 233
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	7 cut(s)	4, 74, 77, 89, 149, 187, 190
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	2 cut(s)	20, 259
BspLI	GGNNCC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	2 cut(s)	62, 184
BssSI	CACGAG	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	2 cut(s)	62, 184
BstDEI	CTNAG	3 cut(s)	113, 138, 227
BstFNI	CGCG	2 cut(s)	20, 259
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	186, 261
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 70, 85, 94, 160
BstUI	CGCG	2 cut(s)	20, 259
BtgZI	GCGATG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	210
CfoI	GCGC	2 cut(s)	186, 261
CseI	GACGC	2 cut(s)	9, 70
CviJI	RGCY	4 cut(s)	97, 163, 209, 282
CviKI_1	RGCY	4 cut(s)	97, 163, 209, 282
DdeI	CTNAG	3 cut(s)	113, 138, 227
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	80
FaiI	YATR	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	74, 77, 89, 187, 190
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	5 cut(s)	74, 77, 89, 187, 190
FspBI	CTAG	1 cut(s)	166
GlaI	GCGC	2 cut(s)	185, 260
GluI	GCNGC	5 cut(s)	74, 77, 89, 187, 190
HaeII	RGCGCY	1 cut(s)	187
HapII	CCGG	3 cut(s)	160, 193, 283
HgaI	GACGC	2 cut(s)	9, 70
HhaI	GCGC	2 cut(s)	186, 261
Hin1I	GRCGYC	2 cut(s)	62, 184
Hin6I	GCGC	2 cut(s)	184, 259
HinP1I	GCGC	2 cut(s)	184, 259
HinfI	GANTC	3 cut(s)	15, 40, 219
HpaII	CCGG	3 cut(s)	160, 193, 283
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	131, 218, 228
Hpy188III	TCNNGA	3 cut(s)	10, 37, 240
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 70, 85, 94, 160
HpyF3I	CTNAG	3 cut(s)	113, 138, 227
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	2 cut(s)	62, 184
HspAI	GCGC	2 cut(s)	184, 259
KasI	GGCGCC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	4 cut(s)	173, 206, 296, 296
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	166
MaeII	ACGT	1 cut(s)	26
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	99, 233
Mly113I	GGCGCC	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	114, 193, 228
MseI	TTAA	3 cut(s)	170, 263, 278
MspI	CCGG	3 cut(s)	160, 193, 283
Mva1269I	GAATGC	1 cut(s)	151
MvnI	CGCG	2 cut(s)	20, 259
MwoI	GCNNNNNNNGC	5 cut(s)	61, 70, 85, 94, 160
NarI	GGCGCC	1 cut(s)	184
NdeII	GATC	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	15, 219
PkrI	GCNGC	5 cut(s)	75, 78, 90, 188, 191
PleI	GAGTC	1 cut(s)	34
PluTI	GGCGCC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	170, 263, 278
SatI	GCNGC	5 cut(s)	74, 77, 89, 187, 190
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	2 cut(s)	99, 233
SetI	ASST	5 cut(s)	29, 35, 86, 204, 239
SfaNI	GCATC	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SsiI	CCGC	7 cut(s)	4, 74, 77, 89, 149, 187, 190
SspDI	GGCGCC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	38, 59, 104, 239
TauI	GCSGC	5 cut(s)	76, 79, 91, 189, 192
TfiI	GAWTC	2 cut(s)	15, 219
Tru1I	TTAA	3 cut(s)	170, 263, 278
Tru9I	TTAA	3 cut(s)	170, 263, 278
TscAI	CASTG	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	217
XspI	CTAG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.