Rh4DG205300

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000306
Physical Location & Seq
Forward (+)
39865859 .. 39866830
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG205300.1

Sequence Viewer

Length: 972 bp
ATGGCTTCCACCACCAAAGAAATAGCTTCAGAGATCCCCAATCTCATCAAGCATTACAAAGATGGCACAGTCGAGCGCTTCTTCGGTTTTCCTTACGTCCCCCCATCTCTTAACGACCCCCAAACCGGTGTCTCCTCCAAAGACATCACCATCTCACACAACCCTTTAGTCTCTGCTCGCCTCTACCTCCCTCAAAACAAATCTCAAAAACTTCCTATCTTGGTTTACTTCCATTGCGGCCGCTTTTGCTTGGAATCGGCCTTCTCGTCCATCCACCACCGCTACCTCAACCGCCTGGTCTCGGAAGCTCAAGTTCTCACCGTCTCAGTCGAGTTTAGGCTCGCCCCGGAAAGCCCACTTCCTGCTGCTTACGAAGATTGTTGGACCGCTCTTCAATGGGTTGCTTCTCACTCAATCCATCAAGATGGTACTTCTCACAAAGAGCCCTGGCTAGTCGATTTCGGGGACTTTGATAGGCTTTACATTGGTGGAGATAGTGCTGGTGGAAATCTTGCACATAACATTGCTATGAAGGCAGGGGCTGAGAGCTTGAATGGCGGTGTGAAAATTTTGGGGGCTATTCTGTCGCACTCGTATTTCTGGGGATCCAAGCCAATCGGGTCGGAGCCTAAAGGTGAAGACATTGAGAAGTCTCCGCAGTGTCTGTGTTGGAATATTGTTTACCCTGGTGCTGATGGAGGCATTGACAATCCATTGATTAATCCGATGGTTTCGGGTGCTCCGAGTTTGGCCGGGCTTGGGTGCTCTAGATTGCTTGTTTGTGTTGCAGGCAAGGATGAGCTGAGGGATCGAAGTGTCTGGTATTATGATTTGGTGAAGGAAAGTGGGTGGAAAGGAGAAGCGGAGTTGTTTGAAGTGGAAGAAGAGGGGCATTGTTTCCATATCTTGTATGAGAAAGAGACCGAGAATGTTGCAAAAATGATCGAACGCTTGGCTGCTTTTCTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

323

Amino Acids

35.69

Weight (kDa)

5.46

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 61 - 188 1.2e-11 BD-FAE
Abhydrolase_3 PF07859 74 - 301 7.1e-43 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 8 cut(s) 237, 241, 280, 292, 387, 558, 656, 863
AclWI GGATC 4 cut(s) 28, 600, 613, 816
AcoI YGGCCR 2 cut(s) 238, 750
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 430
AfeI AGCGCT 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 125, 301, 759
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 395, 553, 875
AjnI CCWGG 3 cut(s) 294, 446, 685
AluBI AGCT 4 cut(s) 26, 308, 549, 802
AluI AGCT 4 cut(s) 26, 308, 549, 802
Alw21I GWGCWC 2 cut(s) 742, 767
Alw26I GTCTC 6 cut(s) 136, 175, 304, 328, 657, 914
AlwI GGATC 4 cut(s) 28, 600, 613, 816
AlwNI CAGNNNCTG 2 cut(s) 542, 664
Aor51HI AGCGCT 1 cut(s) 77
AoxI GGCC 3 cut(s) 238, 258, 750
ApeKI GCWGC 2 cut(s) 365, 956
ApoI RAATTY 1 cut(s) 567
AseI ATTAAT 1 cut(s) 720
AsiGI ACCGGT 1 cut(s) 125
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 384
AsuC2I CCSGG 2 cut(s) 347, 754
AsuHPI GGTGA 4 cut(s) 139, 310, 647, 847
AvaII GGWCC 1 cut(s) 384
BamHI GGATCC 1 cut(s) 605
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 742, 767
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 352, 943
BccI CCATC 8 cut(s) 56, 112, 158, 278, 419, 426, 689, 721
BcgI CGANNNNNNTGC 2 cut(s) 914, 948
BciT130I CCWGG 3 cut(s) 296, 448, 687
BcnI CCSGG 2 cut(s) 347, 754
BcoDI GTCTC 6 cut(s) 136, 175, 304, 328, 657, 914
BfaI CTAG 3 cut(s) 452, 768, 970
BfoI RGCGCY 1 cut(s) 79
BisI GCNGC 4 cut(s) 238, 241, 366, 957
BlsI GCNGC 4 cut(s) 239, 242, 367, 958
Bme1390I CCNGG 5 cut(s) 296, 347, 448, 687, 754
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 607, 627
BmrFI CCNGG 5 cut(s) 296, 347, 448, 687, 754
BpiI GAAGAC 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 347, 754
BsaI GGTCTC 2 cut(s) 304, 914
BsaJI CCNNGG 3 cut(s) 345, 446, 685
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 301, 759
Bse118I RCCGGY 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 232, 522
BseBI CCWGG 3 cut(s) 296, 448, 687
BseDI CCNNGG 3 cut(s) 345, 446, 685
BseGI GGATG 2 cut(s) 270, 802
BseLI CCNNNNNNNGG 3 cut(s) 125, 301, 759
BseMI GCAATG 2 cut(s) 232, 522
BseMII CTCAG 3 cut(s) 339, 534, 794
BseRI GAGGAG 1 cut(s) 124
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 352, 943
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 3 cut(s) 240, 260, 752
BshTI ACCGGT 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 742, 767
BsiSI CCGG 3 cut(s) 126, 347, 753
BslFI GGGAC 2 cut(s) 83, 479
BslI CCNNNNNNNGG 3 cut(s) 125, 301, 759
BsmAI GTCTC 6 cut(s) 136, 175, 304, 328, 657, 914
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 83, 479
BsnI GGCC 3 cut(s) 240, 260, 752
Bso31I GGTCTC 2 cut(s) 304, 914
Bsp1286I GDGCHC 3 cut(s) 447, 742, 767
Bsp143I GATC 4 cut(s) 33, 605, 808, 942
BspACI CCGC 8 cut(s) 237, 241, 280, 292, 387, 558, 656, 863
BspANI GGCC 3 cut(s) 240, 260, 752
BspCNI CTCAG 3 cut(s) 338, 535, 795
BspLI GGNNCC 2 cut(s) 607, 627
BspPI GGATC 4 cut(s) 28, 600, 613, 816
BspQI GCTCTTC 1 cut(s) 396
BspTNI GGTCTC 2 cut(s) 304, 914
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 232, 522
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 345, 446, 685
BssMI GATC 4 cut(s) 33, 605, 808, 942
Bst2UI CCWGG 3 cut(s) 296, 448, 687
Bst4CI ACNGT 2 cut(s) 70, 322
Bst6I CTCTTC 2 cut(s) 396, 879
BstC8I GCNNGC 3 cut(s) 178, 342, 790
BstDEI CTNAG 3 cut(s) 325, 543, 803
BstF5I GGATG 2 cut(s) 270, 802
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 4 cut(s) 36, 608, 811, 945
BstMAI GTCTC 6 cut(s) 136, 175, 304, 328, 657, 914
BstMBI GATC 4 cut(s) 33, 605, 808, 942
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 246, 533, 555
BstNI CCWGG 3 cut(s) 296, 448, 687
BstSCI CCNGG 5 cut(s) 294, 345, 446, 685, 752
BstV1I GCAGC 2 cut(s) 352, 943
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 2 cut(s) 33, 605
BstXI CCANNNNNNTGG 1 cut(s) 425
BstYI RGATCY 2 cut(s) 33, 605
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 3 cut(s) 240, 260, 752
BtsCI GGATG 2 cut(s) 270, 802
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
Cac8I GCNNGC 3 cut(s) 178, 342, 790
CaiI CAGNNNCTG 2 cut(s) 542, 664
CciNI GCGGCCGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 429
CspAI ACCGGT 1 cut(s) 125
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 3 cut(s) 325, 543, 803
DpnI GATC 4 cut(s) 35, 607, 810, 944
DpnII GATC 4 cut(s) 33, 605, 808, 942
EaeI YGGCCR 2 cut(s) 238, 750
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 396, 879
EarI CTCTTC 2 cut(s) 396, 879
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 2 cut(s) 304, 914
Eco47I GGWCC 1 cut(s) 384
Eco47III AGCGCT 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 12
EcoRII CCWGG 3 cut(s) 294, 446, 685
EcoT38I GRGCYC 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 328
FaiI YATR 5 cut(s) 519, 530, 828, 903, 912
FaqI GGGAC 2 cut(s) 83, 479
Fnu4HI GCNGC 4 cut(s) 238, 241, 366, 957
FokI GGATG 2 cut(s) 257, 809
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 4 cut(s) 238, 241, 366, 957
FspBI CTAG 3 cut(s) 452, 768, 970
GlaI GCGC 1 cut(s) 77
GluI GCNGC 4 cut(s) 238, 241, 366, 957
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 3 cut(s) 240, 260, 752
HapII CCGG 3 cut(s) 126, 347, 753
HhaI GCGC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 1 cut(s) 254
HpaII CCGG 3 cut(s) 126, 347, 753
HphI GGTGA 4 cut(s) 139, 310, 647, 847
Hpy166II GTNNAC 2 cut(s) 226, 682
Hpy188I TCNGA 5 cut(s) 31, 304, 625, 726, 744
Hpy188III TCNNGA 2 cut(s) 422, 768
Hpy8I GTNNAC 2 cut(s) 226, 682
HpyAV CCTTC 3 cut(s) 271, 526, 832
HpyCH4III ACNGT 2 cut(s) 70, 322
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 515, 788, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 533, 555
HpyF3I CTNAG 3 cut(s) 325, 543, 803
HpySE526I ACGT 1 cut(s) 96
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 33, 605, 808, 942
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 2 cut(s) 625, 745
Lsp1109I GCAGC 2 cut(s) 352, 943
MaeI CTAG 3 cut(s) 452, 768, 970
MaeII ACGT 1 cut(s) 96
MalI GATC 4 cut(s) 35, 607, 810, 944
MbiI CCGCTC 1 cut(s) 389
MboI GATC 4 cut(s) 33, 605, 808, 942
MboII GAAGA 6 cut(s) 73, 383, 386, 650, 893, 896
MflI RGATCY 2 cut(s) 33, 605
MhlI GDGCHC 3 cut(s) 447, 742, 767
MluCI AATT 1 cut(s) 567
MmeI TCCRAC 3 cut(s) 362, 603, 650
MnlI CCTC 8 cut(s) 145, 191, 197, 201, 296, 692, 798, 880
MseI TTAA 2 cut(s) 111, 720
MslI CAYNNNNRTG 2 cut(s) 423, 527
MspI CCGG 3 cut(s) 126, 347, 753
MspR9I CCNGG 5 cut(s) 296, 347, 448, 687, 754
MvaI CCWGG 3 cut(s) 296, 448, 687
MwoI GCNNNNNNNGC 3 cut(s) 246, 533, 555
NciI CCSGG 2 cut(s) 347, 754
NdeII GATC 4 cut(s) 33, 605, 808, 942
NlaIV GGNNCC 2 cut(s) 607, 627
NotI GCGGCCGC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 2 cut(s) 263, 740
PfeI GAWTC 1 cut(s) 254
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 4 cut(s) 239, 242, 367, 958
PshBI ATTAAT 1 cut(s) 720
Psp6I CCWGG 3 cut(s) 294, 446, 685
PspGI CCWGG 3 cut(s) 294, 446, 685
PspN4I GGNNCC 2 cut(s) 607, 627
PspPI GGNCC 1 cut(s) 384
PstNI CAGNNNCTG 2 cut(s) 542, 664
PsuI RGATCY 2 cut(s) 33, 605
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 423, 527
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 111, 720
SatI GCNGC 4 cut(s) 238, 241, 366, 957
Sau3AI GATC 4 cut(s) 33, 605, 808, 942
Sau96I GGNCC 1 cut(s) 384
ScrFI CCNGG 5 cut(s) 296, 347, 448, 687, 754
SduI GDGCHC 3 cut(s) 447, 742, 767
SetI ASST 8 cut(s) 28, 99, 189, 288, 310, 551, 637, 804
SinI GGWCC 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 423, 527
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 1 cut(s) 567
SsiI CCGC 8 cut(s) 237, 241, 280, 292, 387, 558, 656, 863
SspI AATATT 1 cut(s) 676
SspMI CTAG 3 cut(s) 452, 768, 970
StyD4I CCNGG 5 cut(s) 294, 345, 446, 685, 752
TaaI ACNGT 2 cut(s) 70, 322
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 72, 330, 456, 811, 945
TaqII GACCGA 1 cut(s) 938
TasI AATT 1 cut(s) 567
TauI GCSGC 2 cut(s) 240, 243
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 111, 720
Tru9I TTAA 2 cut(s) 111, 720
TscAI CASTG 1 cut(s) 665
TseI GCWGC 2 cut(s) 365, 956
TspDTI ATGAA 1 cut(s) 545
TspRI CASTG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 384
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 1 cut(s) 567
XbaI TCTAGA 1 cut(s) 767
XspI CTAG 3 cut(s) 452, 768, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.