Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Forward (+)

26829480 .. 26831499

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGACGGCCGCTCCGTCACCACCAGTCGCCGCAGTCTGAAGCCGAAGCTGGAACAAGACTTCGTAGAAGAAACCCAAGAAAACGAGCTGGATCGTAAATCTCCGGCCGTCGATCCCCAAGGTCCGCTTCTTGAGATTCGCGTCCACGTCAAGGTTCTCGACTCCACCTTCTCTGCCTTCGACGCCGATCACGCCGCCGCCAAGGTCGCCGCCCGAGCCCTTGTCGAACTTGCCAAGAACGAGGACAATCTGAAAGACTTAGTGGAATGCGGAGCAGTTCCGGCTCTGGTTAATCAACTACGGGCGCCGCCGCCGGAGAGAGGTGGAAGCCACTGTCCGATTCCGTCTGAGCACGAGGTCGAGAAAGAAAGTGCTTTCGCGCTTAATCTCATCGCCGTTAAGCCGGAAAATCAACATCTCATAGTTGATGCTGGAGGTAAACTATTAAATCCGGGTCCGGCGCCAACAATACTTCTAATTCTGAGTTGTGCTTTTTTGCTGGACTTGCACAGGGAGAGAACAAGGAGGTTACACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

179

Amino Acids

19.62

Weight (kDa)

5.81

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	304, 460
AccBSI	CCGCTC	1 cut(s)	12
AccII	CGCG	2 cut(s)	141, 380
AciI	CCGC	9 cut(s)	10, 31, 125, 195, 198, 210, 270, 308, 311
AclWI	GGATC	2 cut(s)	99, 107
AcoI	YGGCCR	2 cut(s)	7, 105
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	3 cut(s)	183, 305, 461
AfiI	CCNNNNNNNGG	2 cut(s)	151, 320
AjiI	CACGTC	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	2 cut(s)	49, 88
AluI	AGCT	2 cut(s)	49, 88
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	99, 107
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	7, 105
AspLEI	GCGC	3 cut(s)	307, 382, 463
AspS9I	GGNCC	2 cut(s)	122, 455
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	122, 455
BanI	GGYRCC	2 cut(s)	304, 460
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	354
BceAI	ACGGC	3 cut(s)	22, 92, 380
BcnI	CCSGG	1 cut(s)	453
BfoI	RGCGCY	2 cut(s)	308, 464
BisI	GCNGC	7 cut(s)	10, 31, 195, 198, 210, 308, 311
BlsI	GCNGC	7 cut(s)	11, 32, 196, 199, 211, 309, 312
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	2 cut(s)	122, 455
BmeT110I	CYCGRG	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	122, 455
BmiI	GGNNCC	3 cut(s)	306, 456, 462
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	453
BsaHI	GRCGYC	3 cut(s)	183, 305, 461
BsaJI	CCNNGG	2 cut(s)	118, 201
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 320
Bse1I	ACTGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	118, 201
BseLI	CCNNNNNNNGG	2 cut(s)	151, 320
BseMII	CTCAG	2 cut(s)	339, 473
BseNI	ACTGG	1 cut(s)	24
BseX3I	CGGCCG	2 cut(s)	7, 105
Bsh1236I	CGCG	2 cut(s)	141, 380
Bsh1285I	CGRYCG	2 cut(s)	10, 108
BshFI	GGCC	2 cut(s)	9, 107
BshNI	GGYRCC	2 cut(s)	304, 460
BsiEI	CGRYCG	2 cut(s)	10, 108
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	6 cut(s)	104, 281, 314, 404, 452, 458
BslI	CCNNNNNNNGG	2 cut(s)	151, 320
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	9, 107
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	220, 354
Bsp143I	GATC	3 cut(s)	91, 112, 187
BspACI	CCGC	9 cut(s)	10, 31, 125, 195, 198, 210, 270, 308, 311
BspANI	GGCC	2 cut(s)	9, 107
BspCNI	CTCAG	2 cut(s)	340, 474
BspFNI	CGCG	2 cut(s)	141, 380
BspLI	GGNNCC	3 cut(s)	306, 456, 462
BspPI	GGATC	2 cut(s)	99, 107
BspT107I	GGYRCC	2 cut(s)	304, 460
BsrBI	CCGCTC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	118, 201
BssMI	GATC	3 cut(s)	91, 112, 187
BssNI	GRCGYC	3 cut(s)	183, 305, 461
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	2 cut(s)	118, 201
Bst2BI	CACGAG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	335
BstACI	GRCGYC	3 cut(s)	183, 305, 461
BstDEI	CTNAG	3 cut(s)	259, 348, 482
BstFNI	CGCG	2 cut(s)	141, 380
BstH2I	RGCGCY	2 cut(s)	308, 464
BstHHI	GCGC	3 cut(s)	307, 382, 463
BstKTI	GATC	3 cut(s)	94, 115, 190
BstMBI	GATC	3 cut(s)	91, 112, 187
BstMCI	CGRYCG	2 cut(s)	10, 108
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 191, 206, 215, 281, 505
BstSCI	CCNGG	1 cut(s)	451
BstUI	CGCG	2 cut(s)	141, 380
BstZI	CGGCCG	2 cut(s)	7, 105
BsuRI	GGCC	2 cut(s)	9, 107
BtgZI	GCGATG	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	331
CfoI	GCGC	3 cut(s)	307, 382, 463
Cfr13I	GGNCC	2 cut(s)	122, 455
CseI	GACGC	2 cut(s)	130, 191
CviJI	RGCY	9 cut(s)	9, 43, 49, 88, 107, 218, 284, 330, 403
CviKI_1	RGCY	9 cut(s)	9, 43, 49, 88, 107, 218, 284, 330, 403
DdeI	CTNAG	3 cut(s)	259, 348, 482
DinI	GGCGCC	2 cut(s)	306, 462
DpnI	GATC	3 cut(s)	93, 114, 189
DpnII	GATC	3 cut(s)	91, 112, 187
EaeI	YGGCCR	2 cut(s)	7, 105
EagI	CGGCCG	2 cut(s)	7, 105
EclXI	CGGCCG	2 cut(s)	7, 105
Eco130I	CCWWGG	2 cut(s)	118, 201
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	122, 455
Eco52I	CGGCCG	2 cut(s)	7, 105
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	118, 201
EcoT38I	GRGCYC	1 cut(s)	220
EgeI	GGCGCC	2 cut(s)	306, 462
EheI	GGCGCC	2 cut(s)	306, 462
ErhI	CCWWGG	2 cut(s)	118, 201
FaiI	YATR	1 cut(s)	422
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
Fnu4HI	GCNGC	7 cut(s)	10, 31, 195, 198, 210, 308, 311
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	7 cut(s)	10, 31, 195, 198, 210, 308, 311
GlaI	GCGC	3 cut(s)	306, 381, 462
GluI	GCNGC	7 cut(s)	10, 31, 195, 198, 210, 308, 311
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	2 cut(s)	308, 464
HaeIII	GGCC	2 cut(s)	9, 107
HapII	CCGG	6 cut(s)	104, 281, 314, 404, 452, 458
HgaI	GACGC	2 cut(s)	130, 191
HhaI	GCGC	3 cut(s)	307, 382, 463
Hin1I	GRCGYC	3 cut(s)	183, 305, 461
Hin6I	GCGC	3 cut(s)	305, 380, 461
HinP1I	GCGC	3 cut(s)	305, 380, 461
HinfI	GANTC	3 cut(s)	136, 161, 340
HpaII	CCGG	6 cut(s)	104, 281, 314, 404, 452, 458
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	145, 440
Hpy188I	TCNGA	5 cut(s)	39, 252, 339, 349, 483
Hpy188III	TCNNGA	3 cut(s)	131, 158, 361
Hpy8I	GTNNAC	2 cut(s)	145, 440
Hpy99I	CGWCG	2 cut(s)	113, 185
HpyAV	CCTTC	2 cut(s)	178, 187
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 191, 206, 215, 281, 505
HpyF3I	CTNAG	3 cut(s)	259, 348, 482
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	3 cut(s)	183, 305, 461
HspAI	GCGC	3 cut(s)	305, 380, 461
KasI	GGCGCC	2 cut(s)	304, 460
Kzo9I	GATC	3 cut(s)	91, 112, 187
LmnI	GCTCC	2 cut(s)	17, 272
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	16, 528
MalI	GATC	3 cut(s)	93, 114, 189
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	3 cut(s)	91, 112, 187
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	220, 354
MluCI	AATT	1 cut(s)	477
Mly113I	GGCGCC	2 cut(s)	305, 461
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	235, 314, 349, 428, 519
MseI	TTAA	4 cut(s)	291, 384, 399, 446
MspI	CCGG	6 cut(s)	104, 281, 314, 404, 452, 458
MspR9I	CCNGG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	272
MvnI	CGCG	2 cut(s)	141, 380
MwoI	GCNNNNNNNGC	6 cut(s)	182, 191, 206, 215, 281, 505
NarI	GGCGCC	2 cut(s)	305, 461
NciI	CCSGG	1 cut(s)	453
NdeII	GATC	3 cut(s)	91, 112, 187
NlaIV	GGNNCC	3 cut(s)	306, 456, 462
NmuCI	GTSAC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	136, 340
PkrI	GCNGC	7 cut(s)	11, 32, 196, 199, 211, 309, 312
PleI	GAGTC	1 cut(s)	155
PluTI	GGCGCC	2 cut(s)	308, 464
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	3 cut(s)	306, 456, 462
PspPI	GGNCC	2 cut(s)	122, 455
SaqAI	TTAA	4 cut(s)	291, 384, 399, 446
SatI	GCNGC	7 cut(s)	10, 31, 195, 198, 210, 308, 311
Sau3AI	GATC	3 cut(s)	91, 112, 187
Sau96I	GGNCC	2 cut(s)	122, 455
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	220, 354
SfaNI	GCATC	1 cut(s)	418
SfoI	GGCGCC	2 cut(s)	306, 462
SinI	GGWCC	2 cut(s)	122, 455
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	9 cut(s)	10, 31, 125, 195, 198, 210, 270, 308, 311
SspDI	GGCGCC	2 cut(s)	304, 460
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	2 cut(s)	118, 201
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	5 cut(s)	111, 159, 180, 225, 360
TasI	AATT	1 cut(s)	477
TauI	GCSGC	7 cut(s)	12, 33, 197, 200, 212, 310, 313
TfiI	GAWTC	2 cut(s)	136, 340
Tru1I	TTAA	4 cut(s)	291, 384, 399, 446
Tru9I	TTAA	4 cut(s)	291, 384, 399, 446
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	2 cut(s)	4, 333
TspRI	CASTG	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	122, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.