pycom11g25250

Arm repeat protein interacting with

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
28071126 .. 28074667
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25250.3

Sequence Viewer

Length: 1380 bp
ATGTCTTTTGAAGCGGTTGGTGTAATAGGCAATCTTGTTCACTCATCCCCACACATCAAGAAATTAGTACTTCTTGCTGGTGCTTTACAACCTATTATTGGATTGCTCAGTTCCGAATGTACGGAGAGCCAAAGAGAAGCTGCTTTATTACTTGGTCAGTTTGCTGCAGCTGATACAGATTGCAAGGCACATATTGCTCAGAGGGGAGCTTTAAAACCATTAATTGAGATGCTTAAGTCACCTGATGCACAGGTTCAGGAGATGTCAGCCTTTACGCTTGGGAGGTTGGCACAGGACATACATAACCAAGCTGGCATTGCTCACAATGGTGGTATAATGCCTCTAATCAAGCTTCTTGATTCAAAAAACATCTCTCTGCAACATAATGCTGCGTTTTGTCTATATGGTCTTGCAGATAATGAGGATAACACTGCAACTATAATAAAGTTTGGAGGTGTTCAGAAATTCCAAGATGGAGTATTCGTTGCTCAGCAAACTAAGGAATGCGTGGCAAAGTCCTTGAAAAGACTAGAGGAGAAGATTTGTGGACGAGTTTTAAACCATCTGTTATATATGATGCGGGTGACAGATAAGGCCACTCGAAGAAGAGTGGCTTTGGCTCTTGCTCATCTTTGCAACCCTAGTGACAGTGAAAGCATTTTTATTTCTAACAAAGGATTAGAGTTGCTTTTAGGGCTTCTTAAGTCTCTGCAGTATAAGGAGAAACATGATGGTTCTTTGGCCTTGTACAAATTGGCTACAAAAGTCACTTCACTCGCTCGCATGGATGCAGCTCCTCCATCACCCTCCCCACAGGTGTATTTGGGTGAGCAATATGTAAACAATCCTACCCTTTCTGACATCACATTCTTAGTTGAAGGTAAACGGTTCTATGCCCACAGAATTTGTTTGCGTGCCTCATCTGATGCATTCCGTGCCATGTTTGACGGTGGTTACAGGGAGAGAGATGCAAAGGACATAGTGATTCCAAATATTAGATGGGAAGCTTTTGAATTGATGATGAGATTCATATACACAGGATTGGTAGATGTCACTTTGGATATAGCTCAGGATCTCCTCAGAGCTGCTGATCAGTATCTTTTGGAGGGCCTCAAGCGGCTCTGCGAGCATGCCATTTCTCAGGACATCTGCGTGGAAAATCTTTCGCTCATGTTTGAGTTATCGGAGGCCTTCAATGCCTTGTCGTTACAGCAAGCATGCATTCTATTTCTACTGGAGCAATTTGAGGAATTGGTTGAGAAACCATGGTATCCGACATTGGTGGACCGTGTGCTACCAGACATTCGCACATTTTTTACTAATGCGCTTAAGATGCCGATCGAGGCAACCTCGCAGCAGCAGCAGCAGGCAATGGCATAG

Protein Analysis

460

Amino Acids

51.07

Weight (kDa)

6.15

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 14, 580, 1117
AclWI GGATC 1 cut(s) 1080
AcsI RAATTY 2 cut(s) 464, 903
AfaI GTAC 3 cut(s) 69, 121, 749
AfiI CCNNNNNNNGG 1 cut(s) 98
AflII CTTAAG 3 cut(s) 233, 701, 1328
AgsI TTSAA 6 cut(s) 11, 363, 523, 878, 1013, 1195
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 9 cut(s) 140, 170, 209, 311, 352, 794, 1007, 1067, 1085
AluI AGCT 9 cut(s) 140, 170, 209, 311, 352, 794, 1007, 1067, 1085
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 1 cut(s) 1080
AoxI GGCC 4 cut(s) 594, 741, 1108, 1188
ApoI RAATTY 2 cut(s) 464, 903
AseI ATTAAT 1 cut(s) 221
AspLEI GCGC 1 cut(s) 1327
AspS9I GGNCC 2 cut(s) 1108, 1285
AsuHPI GGTGA 4 cut(s) 231, 595, 795, 839
AvaII GGWCC 1 cut(s) 1285
BaeI ACNNNNGTAYC 2 cut(s) 1253, 1286
BccI CCATC 5 cut(s) 467, 570, 725, 808, 993
BciVI GTATCC 1 cut(s) 1281
BclI TGATCA 1 cut(s) 1090
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 2 cut(s) 530, 642
BfmI CTRYAG 2 cut(s) 165, 710
BfrI CTTAAG 3 cut(s) 233, 701, 1328
BfuI GTATCC 1 cut(s) 1281
BlpI GCTNAGC 1 cut(s) 489
BmcAI AGTACT 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 1285
BmgT120I GGNCC 2 cut(s) 1108, 1285
BmsI GCATC 7 cut(s) 219, 235, 567, 778, 916, 958, 1323
BplI GAGNNNNNCTC 2 cut(s) 1334, 1366
BpmI CTGGAG 1 cut(s) 1256
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 1097
BsaBI GATNNNNATC 2 cut(s) 1095, 1337
BsaJI CCNNGG 1 cut(s) 1265
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 1239
Bse3DI GCAATG 2 cut(s) 315, 1377
Bse8I GATNNNNATC 2 cut(s) 1095, 1337
BseDI CCNNGG 1 cut(s) 1265
BseGI GGATG 2 cut(s) 44, 793
BseJI GATNNNNATC 2 cut(s) 1095, 1337
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 2 cut(s) 315, 1377
BseMII CTCAG 6 cut(s) 121, 212, 503, 1082, 1093, 1154
BseNI ACTGG 1 cut(s) 1239
BseRI GAGGAG 3 cut(s) 548, 786, 1067
Bsh1285I CGRYCG 1 cut(s) 1341
BshFI GGCC 4 cut(s) 596, 743, 1110, 1190
BsiEI CGRYCG 1 cut(s) 1341
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 711
BsmI GAATGC 3 cut(s) 509, 929, 1221
BsnI GGCC 4 cut(s) 596, 743, 1110, 1190
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 3 cut(s) 1072, 1090, 1338
Bsp1720I GCTNAGC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 1265
BspACI CCGC 3 cut(s) 14, 580, 1117
BspANI GGCC 4 cut(s) 596, 743, 1110, 1190
BspCNI CTCAG 6 cut(s) 120, 211, 502, 1081, 1092, 1153
BspMAI CTGCAG 2 cut(s) 169, 714
BspPI GGATC 1 cut(s) 1080
BspTI CTTAAG 3 cut(s) 233, 701, 1328
BsrDI GCAATG 2 cut(s) 315, 1377
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 1 cut(s) 1239
BssECI CCNNGG 1 cut(s) 1265
BssMI GATC 3 cut(s) 1072, 1090, 1338
BssT1I CCWWGG 1 cut(s) 1265
Bst4CI ACNGT 4 cut(s) 650, 888, 950, 1289
Bst6I CTCTTC 1 cut(s) 601
BstAFI CTTAAG 3 cut(s) 233, 701, 1328
BstAPI GCANNNNNTGC 2 cut(s) 194, 935
BstAUI TGTACA 1 cut(s) 747
BstC8I GCNNGC 8 cut(s) 313, 781, 915, 1127, 1131, 1215, 1219, 1368
BstDEI CTNAG 8 cut(s) 107, 198, 489, 498, 871, 1068, 1079, 1140
BstDSI CCRYGG 1 cut(s) 1265
BstF5I GGATG 2 cut(s) 44, 793
BstHHI GCGC 1 cut(s) 1327
BstKTI GATC 3 cut(s) 1075, 1093, 1341
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 3 cut(s) 1072, 1090, 1338
BstMCI CGRYCG 1 cut(s) 1341
BstMWI GCNNNNNNNGC 9 cut(s) 194, 317, 694, 935, 1126, 1196, 1333, 1360, 1363
BstNSI RCATGY 2 cut(s) 1133, 1221
BstSFI CTRYAG 2 cut(s) 165, 710
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuI GTATCC 1 cut(s) 1281
BsuRI GGCC 4 cut(s) 596, 743, 1110, 1190
BtgI CCRYGG 1 cut(s) 1265
BtsCI GGATG 2 cut(s) 44, 793
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 429, 655
Cac8I GCNNGC 8 cut(s) 313, 781, 915, 1127, 1131, 1215, 1219, 1368
CfoI GCGC 1 cut(s) 1327
Cfr13I GGNCC 2 cut(s) 1108, 1285
Csp6I GTAC 3 cut(s) 68, 120, 748
CspCI CAANNNNNGTGG 2 cut(s) 887, 922
CviAII CATG 7 cut(s) 728, 784, 940, 1130, 1171, 1218, 1266
CviQI GTAC 3 cut(s) 68, 120, 748
DdeI CTNAG 8 cut(s) 107, 198, 489, 498, 871, 1068, 1079, 1140
DpnI GATC 3 cut(s) 1074, 1092, 1340
DpnII GATC 3 cut(s) 1072, 1090, 1338
DraI TTTAAA 2 cut(s) 213, 558
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
Eco130I CCWWGG 1 cut(s) 1265
Eco147I AGGCCT 1 cut(s) 1190
Eco47I GGWCC 1 cut(s) 1285
EcoO109I RGGNCCY 1 cut(s) 1108
EcoT14I CCWWGG 1 cut(s) 1265
EcoT22I ATGCAT 2 cut(s) 931, 1223
ErhI CCWWGG 1 cut(s) 1265
FaeI CATG 7 cut(s) 731, 787, 943, 1133, 1174, 1221, 1269
FalI AAGNNNNNCTT 2 cut(s) 598, 630
FatI CATG 7 cut(s) 727, 783, 939, 1129, 1170, 1217, 1265
FauI CCCGC 1 cut(s) 573
FbaI TGATCA 1 cut(s) 1090
FokI GGATG 2 cut(s) 31, 800
FspBI CTAG 2 cut(s) 530, 642
GlaI GCGC 1 cut(s) 1326
GsuI CTGGAG 1 cut(s) 1256
HaeIII GGCC 4 cut(s) 596, 743, 1110, 1190
HhaI GCGC 1 cut(s) 1327
Hin1II CATG 7 cut(s) 731, 787, 943, 1133, 1174, 1221, 1269
Hin6I GCGC 1 cut(s) 1325
HinP1I GCGC 1 cut(s) 1325
HindIII AAGCTT 2 cut(s) 350, 1005
HinfI GANTC 3 cut(s) 359, 985, 1026
HphI GGTGA 4 cut(s) 231, 595, 795, 839
Hpy166II GTNNAC 5 cut(s) 40, 548, 841, 884, 1285
Hpy188I TCNGA 8 cut(s) 115, 201, 462, 859, 925, 1082, 1186, 1275
Hpy188III TCNNGA 5 cut(s) 58, 257, 356, 1070, 1142
Hpy8I GTNNAC 5 cut(s) 40, 548, 841, 884, 1285
HpyAV CCTTC 2 cut(s) 872, 1201
HpyCH4III ACNGT 4 cut(s) 650, 888, 950, 1289
HpyF10VI GCNNNNNNNGC 9 cut(s) 194, 317, 694, 935, 1126, 1196, 1333, 1360, 1363
HpyF3I CTNAG 8 cut(s) 107, 198, 489, 498, 871, 1068, 1079, 1140
Hsp92II CATG 7 cut(s) 731, 787, 943, 1133, 1174, 1221, 1269
HspAI GCGC 1 cut(s) 1325
Ksp22I TGATCA 1 cut(s) 1090
Kzo9I GATC 3 cut(s) 1072, 1090, 1338
LmnI GCTCC 3 cut(s) 206, 799, 1237
LweI GCATC 7 cut(s) 219, 235, 567, 778, 916, 958, 1323
MaeI CTAG 2 cut(s) 530, 642
MaeIII GTNAC 7 cut(s) 237, 583, 644, 766, 953, 1051, 1206
MalI GATC 3 cut(s) 1074, 1092, 1340
MboI GATC 3 cut(s) 1072, 1090, 1338
MboII GAAGA 3 cut(s) 550, 615, 618
MflI RGATCY 1 cut(s) 1072
MluCI AATT 8 cut(s) 62, 222, 464, 752, 903, 1013, 1241, 1250
MmeI TCCRAC 1 cut(s) 1298
Mph1103I ATGCAT 2 cut(s) 931, 1223
MseI TTAA 6 cut(s) 212, 221, 234, 557, 702, 1329
MslI CAYNNNNRTG 2 cut(s) 327, 1151
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 3 cut(s) 233, 701, 1328
Mva1269I GAATGC 3 cut(s) 509, 929, 1221
MwoI GCNNNNNNNGC 9 cut(s) 194, 317, 694, 935, 1126, 1196, 1333, 1360, 1363
NcoI CCATGG 1 cut(s) 1265
NdeII GATC 3 cut(s) 1072, 1090, 1338
NlaIII CATG 7 cut(s) 731, 787, 943, 1133, 1174, 1221, 1269
NmuCI GTSAC 5 cut(s) 237, 583, 644, 766, 1051
NsiI ATGCAT 2 cut(s) 931, 1223
NspI RCATGY 2 cut(s) 1133, 1221
OliI CACNNNNGTG 1 cut(s) 327
PaeI GCATGC 2 cut(s) 1133, 1221
PceI AGGCCT 1 cut(s) 1190
PctI GAATGC 3 cut(s) 509, 929, 1221
PfeI GAWTC 3 cut(s) 359, 985, 1026
Ple19I CGATCG 1 cut(s) 1341
PshBI ATTAAT 1 cut(s) 221
PspPI GGNCC 2 cut(s) 1108, 1285
PstI CTGCAG 2 cut(s) 169, 714
PsuI RGATCY 1 cut(s) 1072
PvuI CGATCG 1 cut(s) 1341
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 3 cut(s) 69, 121, 749
RsaNI GTAC 3 cut(s) 68, 120, 748
RseI CAYNNNNRTG 2 cut(s) 327, 1151
SaqAI TTAA 6 cut(s) 212, 221, 234, 557, 702, 1329
Sau3AI GATC 3 cut(s) 1072, 1090, 1338
Sau96I GGNCC 2 cut(s) 1108, 1285
ScaI AGTACT 1 cut(s) 69
SfaNI GCATC 7 cut(s) 219, 235, 567, 778, 916, 958, 1323
SfcI CTRYAG 2 cut(s) 165, 710
SinI GGWCC 1 cut(s) 1285
SmiMI CAYNNNNRTG 2 cut(s) 327, 1151
SmlI CTYRAG 4 cut(s) 233, 701, 1112, 1328
SmoI CTYRAG 4 cut(s) 233, 701, 1112, 1328
SphI GCATGC 2 cut(s) 1133, 1221
Sse9I AATT 8 cut(s) 62, 222, 464, 752, 903, 1013, 1241, 1250
SseBI AGGCCT 1 cut(s) 1190
SsiI CCGC 3 cut(s) 14, 580, 1117
SspI AATATT 1 cut(s) 994
SspMI CTAG 2 cut(s) 530, 642
StuI AGGCCT 1 cut(s) 1190
StyI CCWWGG 1 cut(s) 1265
TaaI ACNGT 4 cut(s) 650, 888, 950, 1289
TaqI TCGA 2 cut(s) 601, 1341
TasI AATT 8 cut(s) 62, 222, 464, 752, 903, 1013, 1241, 1250
TatI WGTACW 2 cut(s) 67, 747
TauI GCSGC 1 cut(s) 1120
TfiI GAWTC 3 cut(s) 359, 985, 1026
Tru1I TTAA 6 cut(s) 212, 221, 234, 557, 702, 1329
Tru9I TTAA 6 cut(s) 212, 221, 234, 557, 702, 1329
TscAI CASTG 2 cut(s) 436, 655
TseFI GTSAC 5 cut(s) 237, 583, 644, 766, 1051
Tsp45I GTSAC 5 cut(s) 237, 583, 644, 766, 1051
TspDTI ATGAA 1 cut(s) 1018
TspGWI ACGGA 2 cut(s) 137, 923
TspRI CASTG 2 cut(s) 436, 655
Vha464I CTTAAG 3 cut(s) 233, 701, 1328
VpaK11BI GGWCC 1 cut(s) 1285
VspI ATTAAT 1 cut(s) 221
XapI RAATTY 2 cut(s) 464, 903
XceI RCATGY 2 cut(s) 1133, 1221
XcmI CCANNNNNNNNNTGG 1 cut(s) 996
XspI CTAG 2 cut(s) 530, 642
ZrmI AGTACT 1 cut(s) 69
Zsp2I ATGCAT 2 cut(s) 931, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.