MD13G1187400.v1.1

carboxylic ester hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000306
Physical Location & Seq
Reverse (-)
15939095 .. 15940093
999 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1187400.v1.1.491

Sequence Viewer

Length: 999 bp
ATGGCTTCCACCACCGCAAAAGAAATAGCTTCAGAGCTGCTCCCTCTAATCAGAATATACAAAGACAGCACGGTGGAACGCCTCATGGGCTCTCCCTATGTGCCCCCATCCCTTCGTGACCCAGAAACCAACGTCAGCTCCAAAGACATCACCATCTCACAAAACCCTAGCATCTCCGCTCGCCTTTACCTCCCTCTTCAAAACCAAAATTACCAGCCCCCCAAAAACCCTATCCCCGTCTTGGTTTACTTCCACGGTGGTGGATTTTGCTTCGAATCCGCCTTCTCATCTGACCACCACCGTTTCCTCAACCGCTTGGTCTCGCAAGCCCAAGTCCTCGCCGTCTCAGTTGAATACAGGCTCGCCCCGGAAAACCCAATTCCCATGTGTTACCAAGATTGCTGGGATGCTCTTGAATGGGTCTCTTCCCACAAACCCCACAAAGAATCAGATGCTAGCAAGGCTGACGAAGAGCCATGGTTGGTCCAGTATGGTACTTTTGATAAATTGTACATTGGTGGTGATAGTGCAGGTGGAAACATTGTGCATAACGTGGCTATGAAGGCAGGGTTTGAGAGTTTGTGCGGTGGGGTGAAAATTGTGGGGGCATTCATGTCACACCCTTACTTTTTAGGGTCAAGGCCAATTGGATCAGAGCCTAAAGGAGAAAACTTTGAGAAGTGGCTGCCTTGTAGAGTTTGGAAGTTTTTGTTCCCATCAGCTAGGGGTAGCGATAATCAAATGGTGAATCTGGCAGGTGAAGGTGCACCGAGCCTGGCTGGACTCGGGTGCTCCCGACTGCTCGTGTGCGTTTCTGAGAAGGATGAGCTGAGGGATCGAGGCATTTGGTATTACGATTTGGTGAGGAAAAGTGGGTGGGAGGGAGAGTTGGAGGTGTTTGAAATGGAAGGTGAGGAACATGCTTTTCATATCTTGTGTGAGGGCAAGACTGAGAATGTGAAGATTATGATCAAACGCTTGGCTTCTTTTCTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

333

Amino Acids

37.1

Weight (kDa)

5.65

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 72 - 122 1e-06 Carboxylesterase family
BD-FAE PF20434 75 - 153 1.8e-09 BD-FAE
Abhydrolase_3 PF07859 81 - 310 1.8e-43 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 521, 746
Acc36I ACCTGC 2 cut(s) 521, 746
AccBSI CCGCTC 1 cut(s) 179
AciI CCGC 5 cut(s) 15, 177, 279, 313, 585
AclWI GGATC 2 cut(s) 658, 843
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 2 cut(s) 496, 512
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 200, 353, 416, 902
AjnI CCWGG 1 cut(s) 774
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 5 cut(s) 29, 37, 138, 722, 829
AluI AGCT 5 cut(s) 29, 37, 138, 722, 829
Alw21I GWGCWC 2 cut(s) 769, 794
Alw26I GTCTC 3 cut(s) 325, 349, 427
Alw44I GTGCAC 1 cut(s) 765
AlwI GGATC 2 cut(s) 658, 843
Ama87I CYCGRG 1 cut(s) 785
AoxI GGCC 1 cut(s) 641
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 2 cut(s) 37, 685
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 7 cut(s) 142, 533, 604, 757, 770, 874, 923
AsuII TTCGAA 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 1 cut(s) 484
BaeGI GKGCMC 2 cut(s) 105, 769
BanII GRGCYC 1 cut(s) 92
BauI CACGAG 1 cut(s) 803
Bbv12I GWGCWC 2 cut(s) 769, 794
BbvCI CCTCAGC 1 cut(s) 830
BbvI GCAGC 2 cut(s) 24, 672
BccI CCATC 3 cut(s) 115, 161, 724
BceAI ACGGC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 776
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 3 cut(s) 325, 349, 427
BfaI CTAG 4 cut(s) 168, 456, 723, 997
BfuAI ACCTGC 2 cut(s) 521, 746
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 2 cut(s) 38, 686
BlsI GCNGC 2 cut(s) 39, 687
Bme1390I CCNGG 2 cut(s) 368, 776
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 1 cut(s) 484
BmrFI CCNGG 2 cut(s) 368, 776
BmsI GCATC 3 cut(s) 180, 397, 442
BmtI GCTAGC 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 830
Bpu14I TTCGAA 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 968
BsaI GGTCTC 2 cut(s) 325, 427
BsaJI CCNNGG 3 cut(s) 253, 366, 476
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 872, 902
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 968
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 3 cut(s) 253, 366, 476
BseGI GGATG 3 cut(s) 107, 412, 829
BseJI GATNNNNATC 1 cut(s) 968
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 4 cut(s) 360, 807, 821, 942
BseNI ACTGG 1 cut(s) 487
BseSI GKGCMC 2 cut(s) 105, 769
BseXI GCAGC 2 cut(s) 24, 672
BseYI CCCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 1 cut(s) 643
BsiHKAI GWGCWC 2 cut(s) 769, 794
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 325, 349, 427
BsmBI CGTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 1 cut(s) 643
Bso31I GGTCTC 2 cut(s) 325, 427
BsoBI CYCGRG 1 cut(s) 785
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 4 cut(s) 92, 105, 769, 794
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 3 cut(s) 650, 835, 969
Bsp19I CCATGG 1 cut(s) 476
BspACI CCGC 5 cut(s) 15, 177, 279, 313, 585
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 4 cut(s) 359, 808, 822, 943
BspMI ACCTGC 2 cut(s) 521, 746
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 658, 843
BspQI GCTCTTC 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 273
BspTNI GGTCTC 2 cut(s) 325, 427
BsrBI CCGCTC 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 3 cut(s) 253, 366, 476
BssMI GATC 3 cut(s) 650, 835, 969
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 3 cut(s) 73, 257, 302
Bst6I CTCTTC 3 cut(s) 201, 430, 465
BstAUI TGTACA 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 181, 327, 363, 457
BstDEI CTNAG 4 cut(s) 346, 816, 830, 951
BstDSI CCRYGG 2 cut(s) 253, 476
BstF5I GGATG 3 cut(s) 107, 412, 829
BstKTI GATC 3 cut(s) 653, 838, 972
BstMAI GTCTC 3 cut(s) 325, 349, 427
BstMBI GATC 3 cut(s) 650, 835, 969
BstMWI GCNNNNNNNGC 3 cut(s) 87, 461, 563
BstNI CCWGG 1 cut(s) 776
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 366, 774
BstSLI GKGCMC 2 cut(s) 105, 769
BstV1I GCAGC 2 cut(s) 24, 672
BstXI CCANNNNNNTGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 643
BtgI CCRYGG 2 cut(s) 253, 476
BtsCI GGATG 3 cut(s) 107, 412, 829
BveI ACCTGC 2 cut(s) 521, 746
Cac8I GCNNGC 4 cut(s) 181, 327, 363, 457
Cfr13I GGNCC 1 cut(s) 484
Csp6I GTAC 2 cut(s) 495, 511
CviAII CATG 5 cut(s) 85, 385, 477, 613, 920
CviQI GTAC 2 cut(s) 495, 511
DdeI CTNAG 4 cut(s) 346, 816, 830, 951
DpnI GATC 3 cut(s) 652, 837, 971
DpnII GATC 3 cut(s) 650, 835, 969
Eam1104I CTCTTC 3 cut(s) 201, 430, 465
EarI CTCTTC 3 cut(s) 201, 430, 465
EciI GGCGGA 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 2 cut(s) 325, 427
Eco47I GGWCC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 774
EcoT14I CCWWGG 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 476
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 5 cut(s) 88, 388, 480, 616, 923
FatI CATG 5 cut(s) 84, 384, 476, 612, 919
FbaI TGATCA 1 cut(s) 969
Fnu4HI GCNGC 2 cut(s) 38, 686
FokI GGATG 3 cut(s) 94, 419, 836
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 38, 686
FspBI CTAG 4 cut(s) 168, 456, 723, 997
GluI GCNGC 2 cut(s) 38, 686
GsaI CCCAGC 1 cut(s) 406
HaeIII GGCC 1 cut(s) 643
HapII CCGG 1 cut(s) 368
Hin1II CATG 5 cut(s) 88, 388, 480, 616, 923
HinfI GANTC 4 cut(s) 275, 446, 748, 783
HpaII CCGG 1 cut(s) 368
HphI GGTGA 7 cut(s) 142, 533, 604, 757, 770, 874, 923
Hpy166II GTNNAC 2 cut(s) 247, 767
Hpy188I TCNGA 6 cut(s) 34, 53, 292, 451, 655, 817
Hpy188III TCNNGA 3 cut(s) 116, 413, 795
Hpy8I GTNNAC 2 cut(s) 247, 767
HpyAV CCTTC 6 cut(s) 122, 292, 556, 755, 814, 902
HpyCH4III ACNGT 3 cut(s) 73, 257, 302
HpyCH4IV ACGT 2 cut(s) 132, 552
HpyCH4V TGCA 3 cut(s) 530, 547, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 461, 563
HpyF3I CTNAG 4 cut(s) 346, 816, 830, 951
HpySE526I ACGT 2 cut(s) 132, 552
Hsp92II CATG 5 cut(s) 88, 388, 480, 616, 923
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 3 cut(s) 650, 835, 969
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 3 cut(s) 45, 143, 797
Lsp1109I GCAGC 2 cut(s) 24, 672
LweI GCATC 3 cut(s) 180, 397, 442
MaeI CTAG 4 cut(s) 168, 456, 723, 997
MaeII ACGT 2 cut(s) 132, 552
MaeIII GTNAC 3 cut(s) 116, 389, 615
MalI GATC 3 cut(s) 652, 837, 971
MbiI CCGCTC 1 cut(s) 179
MboI GATC 3 cut(s) 650, 835, 969
MboII GAAGA 4 cut(s) 188, 417, 482, 973
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 4 cut(s) 92, 105, 769, 794
MluCI AATT 5 cut(s) 208, 378, 506, 597, 645
MlyI GAGTC 1 cut(s) 777
MmeI TCCRAC 1 cut(s) 870
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 368, 776
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 776
MwoI GCNNNNNNNGC 3 cut(s) 87, 461, 563
NciI CCSGG 1 cut(s) 368
NcoI CCATGG 1 cut(s) 476
NdeII GATC 3 cut(s) 650, 835, 969
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 5 cut(s) 88, 388, 480, 616, 923
NmuCI GTSAC 2 cut(s) 116, 615
NspI RCATGY 1 cut(s) 923
NspV TTCGAA 1 cut(s) 273
OliI CACNNNNGTG 1 cut(s) 258
PaqCI CACCTGC 2 cut(s) 521, 746
PciSI GCTCTTC 1 cut(s) 465
PctI GAATGC 1 cut(s) 608
PfeI GAWTC 3 cut(s) 275, 446, 748
PkrI GCNGC 2 cut(s) 39, 687
PleI GAGTC 1 cut(s) 777
PpsI GAGTC 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 774
PspFI CCCAGC 1 cut(s) 402
PspGI CCWGG 1 cut(s) 774
PspPI GGNCC 1 cut(s) 484
RsaI GTAC 2 cut(s) 496, 512
RsaNI GTAC 2 cut(s) 495, 511
RseI CAYNNNNRTG 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 465
SatI GCNGC 2 cut(s) 38, 686
Sau3AI GATC 3 cut(s) 650, 835, 969
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 1 cut(s) 777
ScrFI CCNGG 2 cut(s) 368, 776
SduI GDGCHC 4 cut(s) 92, 105, 769, 794
SfaNI GCATC 3 cut(s) 180, 397, 442
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 5 cut(s) 208, 378, 506, 597, 645
SsiI CCGC 5 cut(s) 15, 177, 279, 313, 585
SspMI CTAG 4 cut(s) 168, 456, 723, 997
StyD4I CCNGG 2 cut(s) 366, 774
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 73, 257, 302
TaiI ACGT 2 cut(s) 135, 555
TaqI TCGA 2 cut(s) 273, 838
TasI AATT 5 cut(s) 208, 378, 506, 597, 645
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 3 cut(s) 275, 446, 748
TseFI GTSAC 2 cut(s) 116, 615
TseI GCWGC 2 cut(s) 37, 685
Tsp45I GTSAC 2 cut(s) 116, 615
TspDTI ATGAA 3 cut(s) 575, 601, 917
VneI GTGCAC 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 484
XceI RCATGY 1 cut(s) 923
XspI CTAG 4 cut(s) 168, 456, 723, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.