Rorug04G0145400

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000306
Physical Location & Seq
Forward (+)
24103382 .. 24109060
5679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0145400.1

Sequence Viewer

Length: 696 bp
ATGGCCACAGCGTTGCCCATGGCATCAACTTCCAGTCTCAGTCTCAGTAGACGACCACCTTTCTTGGGTTCATATTCTGGAAAGAGGACCATGCCTGCAAATTATCAAGGCATTTGCTGTCTCAATAATTCACAACTTTGTACAACCACAAGAGGATACAAGGATGACGTTAATCTAATCAAACGGAGACAGATGATTGCCTTCCTTTTTGGTTTTTCAAGCTTTGTCTTAGACTCTTTTCAAGCTGAGGGAGCTGGCTTGCCCCCTGAAGAAAAGCCTCGACTATGTGATGATTCTTGCGAAAAACAGCTAGAAAATGTCCCTATGGTAACTACAGAGTCTGGTTTGCAGTATAAGGATATTAAAGTTGGTCAAGGCCCCAGTCCACCTGTCGGTTTTCAGGTGGCGGCGAATTATGTTGCCATGGTTCCGTCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAACTTTATATATTCCGTGTTGGCTCTGGTCAGGTGATCAAAGGACTTGACGAAGGGATCTTGACCATGAAAATAGGAGGGAAGCGGCGACTCTACATCCCGGGATCTTTGGCCTTTCCCAAGGGTCTCAGTTCAGCTCCAGGAAGGCCAAGGGTGGCTCCAAGTAGTCCAGTGGTTTTCGATGTGAGTCTGGAATACGTACCAGGCCTTGAAATTGAGGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

231

Amino Acids

25.0

Weight (kDa)

8.23

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 129 - 220 4.7e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 49
AciI CCGC 2 cut(s) 407, 553
AclWI GGATC 2 cut(s) 533, 580
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 142, 669
AfiI CCNNNNNNNGG 2 cut(s) 65, 392
AgsI TTSAA 3 cut(s) 219, 242, 680
AjnI CCWGG 2 cut(s) 607, 670
AluBI AGCT 5 cut(s) 222, 245, 254, 310, 605
AluI AGCT 5 cut(s) 222, 245, 254, 310, 605
Alw26I GTCTC 5 cut(s) 41, 47, 125, 181, 599
AlwI GGATC 2 cut(s) 533, 580
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 5 cut(s) 3, 376, 579, 614, 673
AspS9I GGNCC 2 cut(s) 87, 377
AsuC2I CCSGG 2 cut(s) 569, 570
AsuHPI GGTGA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 87
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 246
BciT130I CCWGG 2 cut(s) 609, 672
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 2 cut(s) 569, 570
BcoDI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 2 cut(s) 408, 554
BlsI GCNGC 2 cut(s) 409, 555
Bme1390I CCNGG 4 cut(s) 569, 570, 609, 672
Bme18I GGWCC 1 cut(s) 87
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 87, 377
BmiI GGNNCC 3 cut(s) 379, 429, 627
BmrFI CCNGG 4 cut(s) 569, 570, 609, 672
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 569, 570
BsaAI YACGTR 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 5 cut(s) 18, 423, 568, 588, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 392
Bse1I ACTGG 3 cut(s) 33, 381, 638
BseBI CCWGG 2 cut(s) 609, 672
BseDI CCNNGG 5 cut(s) 18, 423, 568, 588, 617
BseGI GGATG 2 cut(s) 169, 564
BseLI CCNNNNNNNGG 2 cut(s) 65, 392
BseMII CTCAG 4 cut(s) 52, 58, 237, 610
BseNI ACTGG 3 cut(s) 33, 381, 638
BshFI GGCC 5 cut(s) 5, 378, 581, 616, 675
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 65, 392
BsmAI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 5 cut(s) 5, 378, 581, 616, 675
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 3 cut(s) 504, 525, 572
Bsp19I CCATGG 2 cut(s) 18, 423
BspACI CCGC 2 cut(s) 407, 553
BspANI GGCC 5 cut(s) 5, 378, 581, 616, 675
BspCNI CTCAG 4 cut(s) 51, 57, 238, 609
BspLI GGNNCC 3 cut(s) 379, 429, 627
BspPI GGATC 2 cut(s) 533, 580
BspTNI GGTCTC 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 3 cut(s) 33, 381, 638
BssECI CCNNGG 5 cut(s) 18, 423, 568, 588, 617
BssMI GATC 3 cut(s) 504, 525, 572
BssT1I CCWWGG 4 cut(s) 18, 423, 588, 617
Bst2UI CCWGG 2 cut(s) 609, 672
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 684
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 96, 256, 260
BstDEI CTNAG 5 cut(s) 38, 44, 229, 246, 596
BstDSI CCRYGG 2 cut(s) 18, 423
BstF5I GGATG 2 cut(s) 169, 564
BstKTI GATC 3 cut(s) 507, 528, 575
BstMAI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BstMBI GATC 3 cut(s) 504, 525, 572
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 609, 672
BstSCI CCNGG 4 cut(s) 567, 568, 607, 670
BstSFI CTRYAG 1 cut(s) 333
BstSNI TACGTA 1 cut(s) 667
BstX2I RGATCY 2 cut(s) 525, 572
BstYI RGATCY 2 cut(s) 525, 572
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 5 cut(s) 5, 378, 581, 616, 675
BtgI CCRYGG 2 cut(s) 18, 423
BtsCI GGATG 2 cut(s) 169, 564
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 3 cut(s) 96, 256, 260
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 87, 377
Cfr9I CCCGGG 1 cut(s) 568
Csp6I GTAC 2 cut(s) 141, 668
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 4 cut(s) 19, 91, 424, 535
CviQI GTAC 2 cut(s) 141, 668
DdeI CTNAG 5 cut(s) 38, 44, 229, 246, 596
DpnI GATC 3 cut(s) 506, 527, 574
DpnII GATC 3 cut(s) 504, 525, 572
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Eco105I TACGTA 1 cut(s) 667
Eco130I CCWWGG 4 cut(s) 18, 423, 588, 617
Eco147I AGGCCT 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 607, 670
EcoT14I CCWWGG 4 cut(s) 18, 423, 588, 617
ErhI CCWWGG 4 cut(s) 18, 423, 588, 617
FaeI CATG 4 cut(s) 22, 94, 427, 538
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 18, 90, 423, 534
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 408, 554
FokI GGATG 2 cut(s) 176, 551
Fsp4HI GCNGC 2 cut(s) 408, 554
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 408, 554
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 5 cut(s) 5, 378, 581, 616, 675
HapII CCGG 1 cut(s) 569
Hin1II CATG 4 cut(s) 22, 94, 427, 538
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 5 cut(s) 233, 293, 338, 558, 655
HpaII CCGG 1 cut(s) 569
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 3 cut(s) 50, 386, 470
Hpy188III TCNNGA 4 cut(s) 78, 435, 529, 659
Hpy8I GTNNAC 3 cut(s) 50, 386, 470
HpyAV CCTTC 4 cut(s) 211, 457, 515, 606
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 2 cut(s) 168, 666
HpyCH4V TGCA 2 cut(s) 98, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 5 cut(s) 38, 44, 229, 246, 596
HpySE526I ACGT 2 cut(s) 168, 666
Hsp92II CATG 4 cut(s) 22, 94, 427, 538
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 3 cut(s) 504, 525, 572
LmnI GCTCC 3 cut(s) 251, 610, 631
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 311
MaeII ACGT 2 cut(s) 168, 666
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 506, 527, 574
MboI GATC 3 cut(s) 504, 525, 572
MboII GAAGA 1 cut(s) 281
MflI RGATCY 2 cut(s) 525, 572
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 100, 127, 412, 681
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 227, 347, 552, 664
MnlI CCTC 6 cut(s) 78, 146, 241, 288, 539, 679
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 171, 363
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 4 cut(s) 569, 570, 609, 672
MvaI CCWGG 2 cut(s) 609, 672
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 2 cut(s) 569, 570
NcoI CCATGG 2 cut(s) 18, 423
NdeII GATC 3 cut(s) 504, 525, 572
NlaIII CATG 4 cut(s) 22, 94, 427, 538
NlaIV GGNNCC 3 cut(s) 379, 429, 627
PceI AGGCCT 1 cut(s) 675
PfeI GAWTC 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 2 cut(s) 409, 555
PleI GAGTC 4 cut(s) 227, 346, 552, 663
PpsI GAGTC 4 cut(s) 227, 346, 552, 663
Ppu21I YACGTR 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 607, 670
PspGI CCWGG 2 cut(s) 607, 670
PspN4I GGNNCC 3 cut(s) 379, 429, 627
PspPI GGNCC 2 cut(s) 87, 377
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 525, 572
RsaI GTAC 2 cut(s) 142, 669
RsaNI GTAC 2 cut(s) 141, 668
SaqAI TTAA 2 cut(s) 171, 363
SatI GCNGC 2 cut(s) 408, 554
Sau3AI GATC 3 cut(s) 504, 525, 572
Sau96I GGNCC 2 cut(s) 87, 377
SchI GAGTC 4 cut(s) 227, 347, 552, 664
ScrFI CCNGG 4 cut(s) 569, 570, 609, 672
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 570
SnaBI TACGTA 1 cut(s) 667
Sse9I AATT 4 cut(s) 100, 127, 412, 681
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 2 cut(s) 407, 553
SspI AATATT 1 cut(s) 444
SspMI CTAG 1 cut(s) 311
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 4 cut(s) 567, 568, 607, 670
StyI CCWWGG 4 cut(s) 18, 423, 588, 617
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 2 cut(s) 171, 669
TaqI TCGA 2 cut(s) 280, 648
TasI AATT 4 cut(s) 100, 127, 412, 681
TatI WGTACW 1 cut(s) 140
TauI GCSGC 2 cut(s) 410, 556
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 171, 363
Tru9I TTAA 2 cut(s) 171, 363
TscAI CASTG 1 cut(s) 645
TspDTI ATGAA 3 cut(s) 60, 444, 551
TspGWI ACGGA 3 cut(s) 199, 420, 473
TspMI CCCGGG 1 cut(s) 568
TspRI CASTG 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 87
XmaI CCCGGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.