FvH4_4g15010

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000306
Physical Location & Seq
Reverse (-)
18609882 .. 18610859
978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15010.t1

Sequence Viewer

Length: 978 bp
ATGGCTTCCACTCCCACCACCAAAGAAATCGCCTCCGAGATCCCAAACCTCATCAAGCACTACAAAGATGGCACAGTCGAACGCTTCTTCGGCTCTCCGCACGTCCCCCCATCTCTTAACGACCCCGTAACCGGTGTCTCCTCCAAAGACATCACCATCTCACATAACCCCTTAATCTCTGCTCGCCTCTACCTCCCTCAAAACCAAACCAAAAGGCTTCCCATCTTGGTCTACTTCCACGGCGGAGGCTTCTGCCTCGAGTCCGCCTTCTCCTCCCTCGACCACCGCTACCTCAATCGCCTCGTATCAGAAGCTCAGGTCATTGCCGTCTCAGTCGAGTACAGGCTCGCCCCGGAAAGCCCTCTTCCTGCTGCTTATGATGATGCCTGGACCGCTCTTCAGTGGGTTGCTTCTCACTCACTCAATGAAGACGATCCTTCTCAGAGAGAGCCGTGGCTAGCCGATTATGGAGACTTTGATAGAGTTTATATTGGTGGAGATAGTGCTGGAGGGAACCTTGCACATAACCTAGCCATGAAGGCAGGGGTTGAGAGCTTAAATGGTGCAGTGAAGATTTTGGGGGCTATTCTATCCCACCCGTATTTTTGGGGGTCCGATCCGGTTGGGTCGGAGCCTAAAGGTGAAGACAAGTTGAAGTCCCTGCCTTATCTGGTTTGGAAATTTGCTTATCCTTCTGCTGATGGAGGCATTGACAATCCGTTGATTAATCCGATGGTTTCGGGTGCTCCGAGTTTGGCCAGGCTTGGATGCTCTAGGGTTCTTGTTTGTGTTGCAGGCAAGGATGAGCTGAGGGATCGAGGTGTATTGTATTATGATTTGGTGAAAGGAAGTGGATGGAAAGGAGAAGCGGAGCTGTTTGAAGTGGAAGGAGAGGAACATTGCTTTCATATCTTGTATGAGAAAGAGACTGAGAATGTGAAGAGAATGATCAAACGGTTGGCTGATTTTCTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

326

Amino Acids

35.78

Weight (kDa)

5.4

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 63 - 191 4.7e-14 BD-FAE
COesterase PF00135 64 - 118 7.6e-08 Carboxylesterase family
Abhydrolase_3 PF07859 76 - 303 5.2e-50 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 231
AciI CCGC 6 cut(s) 98, 243, 264, 286, 393, 869
AclWI GGATC 4 cut(s) 34, 428, 611, 822
AcoI YGGCCR 1 cut(s) 756
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 131
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 2 cut(s) 655, 881
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 2 cut(s) 386, 758
AluBI AGCT 4 cut(s) 314, 555, 808, 874
AluI AGCT 4 cut(s) 314, 555, 808, 874
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 4 cut(s) 142, 334, 465, 920
AlwI GGATC 4 cut(s) 34, 428, 611, 822
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 1 cut(s) 756
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 680
AseI ATTAAT 1 cut(s) 726
AsiGI ACCGGT 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 390, 612
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 145, 653, 853
AsuNHI GCTAGC 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 390, 612
BalI TGGCCA 1 cut(s) 758
BbsI GAAGAC 2 cut(s) 435, 651
Bbv12I GWGCWC 1 cut(s) 748
BbvCI CCTCAGC 1 cut(s) 809
BbvI GCAGC 1 cut(s) 358
BccI CCATC 7 cut(s) 62, 118, 164, 230, 695, 727, 849
BceAI ACGGC 3 cut(s) 256, 311, 436
BciT130I CCWGG 2 cut(s) 388, 760
BclI TGATCA 1 cut(s) 948
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 4 cut(s) 142, 334, 465, 920
BfaI CTAG 4 cut(s) 458, 530, 774, 971
BglI GCCNNNNNGGC 1 cut(s) 539
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 3 cut(s) 353, 388, 760
Bme18I GGWCC 2 cut(s) 390, 612
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 390, 612
BmiI GGNNCC 3 cut(s) 515, 613, 633
BmrFI CCNGG 3 cut(s) 353, 388, 760
BmsI GCATC 2 cut(s) 373, 758
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 2 cut(s) 435, 651
BpmI CTGGAG 1 cut(s) 528
Bpu10I CCTNAGC 2 cut(s) 315, 809
BpuMI CCSGG 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 238, 351, 452
BsaWI WCCGGW 2 cut(s) 131, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 131
Bse3DI GCAATG 2 cut(s) 321, 898
BseBI CCWGG 2 cut(s) 388, 760
BseDI CCNNGG 3 cut(s) 238, 351, 452
BseGI GGATG 3 cut(s) 773, 808, 860
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 2 cut(s) 321, 898
BseMII CTCAG 5 cut(s) 329, 345, 455, 800, 921
BseRI GAGGAG 2 cut(s) 130, 262
BseXI GCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 1 cut(s) 758
BshTI ACCGGT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 132, 353, 620
BslFI GGGAC 2 cut(s) 89, 643
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 4 cut(s) 142, 334, 465, 920
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 2 cut(s) 89, 643
BsnI GGCC 1 cut(s) 758
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 5 cut(s) 39, 433, 616, 814, 948
BspACI CCGC 6 cut(s) 98, 243, 264, 286, 393, 869
BspANI GGCC 1 cut(s) 758
BspCNI CTCAG 5 cut(s) 328, 344, 454, 801, 922
BspLI GGNNCC 3 cut(s) 515, 613, 633
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 4 cut(s) 34, 428, 611, 822
BspQI GCTCTTC 1 cut(s) 402
BsrBI CCGCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 321, 898
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 238, 351, 452
BssMI GATC 5 cut(s) 39, 433, 616, 814, 948
Bst2UI CCWGG 2 cut(s) 388, 760
Bst4CI ACNGT 2 cut(s) 76, 957
Bst6I CTCTTC 3 cut(s) 369, 402, 935
BstC8I GCNNGC 4 cut(s) 184, 348, 459, 796
BstDEI CTNAG 5 cut(s) 315, 331, 441, 809, 930
BstDSI CCRYGG 2 cut(s) 238, 452
BstF5I GGATG 3 cut(s) 773, 808, 860
BstKTI GATC 5 cut(s) 42, 436, 619, 817, 951
BstMAI GTCTC 4 cut(s) 142, 334, 465, 920
BstMBI GATC 5 cut(s) 39, 433, 616, 814, 948
BstMWI GCNNNNNNNGC 3 cut(s) 90, 392, 539
BstNI CCWGG 2 cut(s) 388, 760
BstSCI CCNGG 3 cut(s) 351, 386, 758
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 2 cut(s) 435, 651
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 758
BtgI CCRYGG 2 cut(s) 238, 452
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 773, 808, 860
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 407, 573
Cac8I GCNNGC 4 cut(s) 184, 348, 459, 796
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 390, 612
Csp6I GTAC 1 cut(s) 340
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 1 cut(s) 535
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 5 cut(s) 315, 331, 441, 809, 930
DpnI GATC 5 cut(s) 41, 435, 618, 816, 950
DpnII GATC 5 cut(s) 39, 433, 616, 814, 948
EaeI YGGCCR 1 cut(s) 756
Eam1104I CTCTTC 3 cut(s) 369, 402, 935
EarI CTCTTC 3 cut(s) 369, 402, 935
EciI GGCGGA 2 cut(s) 253, 258
Eco47I GGWCC 2 cut(s) 390, 612
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 386, 758
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 1 cut(s) 538
FaiI YATR 9 cut(s) 165, 378, 468, 489, 525, 536, 834, 909, 918
FaqI GGGAC 2 cut(s) 89, 643
FatI CATG 1 cut(s) 534
FbaI TGATCA 1 cut(s) 948
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 3 cut(s) 780, 815, 867
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 4 cut(s) 458, 530, 774, 971
GluI GCNGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 758
HapII CCGG 3 cut(s) 132, 353, 620
Hin1II CATG 1 cut(s) 538
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 132, 353, 620
HphI GGTGA 3 cut(s) 145, 653, 853
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 7 cut(s) 37, 310, 444, 616, 631, 732, 750
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 5 cut(s) 277, 447, 532, 702, 881
HpyCH4III ACNGT 2 cut(s) 76, 957
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 521, 566, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 392, 539
HpyF3I CTNAG 5 cut(s) 315, 331, 441, 809, 930
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 5 cut(s) 39, 433, 616, 814, 948
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 3 cut(s) 631, 751, 871
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 2 cut(s) 373, 758
MaeI CTAG 4 cut(s) 458, 530, 774, 971
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 127
MalI GATC 5 cut(s) 41, 435, 618, 816, 950
MbiI CCGCTC 1 cut(s) 395
MboI GATC 5 cut(s) 39, 433, 616, 814, 948
MboII GAAGA 7 cut(s) 79, 356, 389, 440, 583, 656, 952
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 1 cut(s) 680
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 609
Mox20I TGGCCA 1 cut(s) 758
MscI TGGCCA 1 cut(s) 758
MseI TTAA 4 cut(s) 117, 173, 557, 726
Msp20I TGGCCA 1 cut(s) 758
MspI CCGG 3 cut(s) 132, 353, 620
MspR9I CCNGG 3 cut(s) 353, 388, 760
MvaI CCWGG 2 cut(s) 388, 760
MwoI GCNNNNNNNGC 3 cut(s) 90, 392, 539
NciI CCSGG 1 cut(s) 353
NdeII GATC 5 cut(s) 39, 433, 616, 814, 948
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 3 cut(s) 515, 613, 633
PaeR7I CTCGAG 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 726
Psp6I CCWGG 2 cut(s) 386, 758
PspGI CCWGG 2 cut(s) 386, 758
PspN4I GGNNCC 3 cut(s) 515, 613, 633
PspPI GGNCC 2 cut(s) 390, 612
PspXI VCTCGAGB 1 cut(s) 257
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 117, 173, 557, 726
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 5 cut(s) 39, 433, 616, 814, 948
Sau96I GGNCC 2 cut(s) 390, 612
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 3 cut(s) 353, 388, 760
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 2 cut(s) 373, 758
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 2 cut(s) 390, 612
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 680
SsiI CCGC 6 cut(s) 98, 243, 264, 286, 393, 869
SspMI CTAG 4 cut(s) 458, 530, 774, 971
StyD4I CCNGG 3 cut(s) 351, 386, 758
TaaI ACNGT 2 cut(s) 76, 957
TaiI ACGT 1 cut(s) 105
TaqI TCGA 5 cut(s) 78, 258, 279, 336, 817
TasI AATT 1 cut(s) 680
TatI WGTACW 1 cut(s) 339
Tru1I TTAA 4 cut(s) 117, 173, 557, 726
Tru9I TTAA 4 cut(s) 117, 173, 557, 726
TscAI CASTG 2 cut(s) 407, 573
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 441, 551, 896
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 2 cut(s) 407, 573
VpaK11BI GGWCC 2 cut(s) 390, 612
VspI ATTAAT 1 cut(s) 726
XapI RAATTY 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 4 cut(s) 458, 530, 774, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.