Rw4G017600

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000306
Physical Location & Seq
Forward (+)
39597464 .. 39599160
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017600.1

Sequence Viewer

Length: 1041 bp
ATGCTTGATAAGATCACATTGATTCATTTCTCATCCATCTCTTCTCTCTCTACCTTTCCTTCTCCGATGGGTTCCACCACCACCAAAGAAATCGCCGCAGAGATCCCCAATCTCATCAAGCACTACAAAGATGGCACAGTTGAACGCCTCTTCGGCTCTCCACACGTTCCCCCATCTCTTAACGACCCCGATACTGGTGTCTCCTCCAAAGACATCACCATCTCACACAATCCCTTAATCTCTGCTCGCCTCTACCGCCCTCAAAACCAAACCAAAAAGCTTCCCATCTTGCTCTACTTCCACGGCGGCGGTTTCTGCGTCGAGTCCGCCTTCTCCTCCCTCGACCACCGCTACCTCAACCGCCTGGTATCGGAAGCTCAAGTCATTGCTGTCTCAGTAGAGTACAGGCTGGCCCCGGAAAGCCCTCTTCCTGCTGCTTATGAAGATTGCTGGGCCGCTCTTCAGTGGGTTGCTTCTCACTCACTCAATGAAGATGATACTTCTCACAAAGAGCCGTGGCTAGCCGATTTCGGCGACTTCGATAGTGTTTACATTGGTGGAGACAGTGCTGGAGGGAACCTTGCACATAACATAGCTATGAGAGCAGGGATTGAGAGCTTACCTGGTGGGGTGAAGATTTTGGGGGCTATTCTGTCCCACCCGTACTTTTGGGGGTCCAAGCCAATCGGGTCGGAGCCTAAAGGTGAAGACAATGATAAGTCCATGCCTTATCTGGTTTGGAACTTTGCTTACCCTTCTGCTGATGGAGGCATTGACAATCCGTTGATTAATCCGATGGTTTCGGGTGCTCCGAGTTTGGCCGGGCTTGGGTGTTCTAGGCTTCTTGTGTGTGTTGCTGGCAAGGATGAGCTGAGGGATCGAAGCGTCTGGTATTATGAGTTGGTGAAGGAAAGTGGATGGAAAGGAGAAGTGGAGCTGTTTGAAGTGGAAGGAGAGGAGCATTGCTTTCATATCTTGTATGAGAAAGAGACTGAGAATGTAAAGAAAATGATCAAACGGTTAGCTGATTTTCTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

346

Amino Acids

38.1

Weight (kDa)

5.23

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 84 - 205 4.5e-13 BD-FAE
COesterase PF00135 85 - 195 4.4e-08 Carboxylesterase family
Abhydrolase_3 PF07859 97 - 324 2.7e-50 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 458
AciI CCGC 8 cut(s) 96, 256, 306, 309, 327, 349, 361, 456
AclWI GGATC 2 cut(s) 97, 885
AcoI YGGCCR 1 cut(s) 819
AcuI CTGAAG 1 cut(s) 446
AfaI GTAC 2 cut(s) 404, 665
AfiI CCNNNNNNNGG 3 cut(s) 194, 370, 828
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 2 cut(s) 143, 944
AjnI CCWGG 2 cut(s) 363, 622
AluBI AGCT 7 cut(s) 280, 377, 596, 618, 871, 937, 1025
AluI AGCT 7 cut(s) 280, 377, 596, 618, 871, 937, 1025
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 4 cut(s) 205, 397, 555, 983
AlwI GGATC 2 cut(s) 97, 885
AoxI GGCC 3 cut(s) 411, 453, 819
ApeKI GCWGC 1 cut(s) 434
AseI ATTAAT 1 cut(s) 789
AspS9I GGNCC 3 cut(s) 412, 453, 675
AsuC2I CCSGG 2 cut(s) 416, 823
AsuHPI GGTGA 4 cut(s) 208, 643, 716, 916
AsuNHI GCTAGC 1 cut(s) 520
AvaII GGWCC 1 cut(s) 675
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 872
BbvI GCAGC 1 cut(s) 421
BccI CCATC 9 cut(s) 44, 61, 125, 181, 227, 293, 758, 790, 912
BceAI ACGGC 2 cut(s) 319, 499
BciT130I CCWGG 2 cut(s) 365, 624
BclI TGATCA 1 cut(s) 1011
BcnI CCSGG 2 cut(s) 416, 823
BcoDI GTCTC 4 cut(s) 205, 397, 555, 983
BfaI CTAG 4 cut(s) 521, 837, 1034, 1039
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 4 cut(s) 96, 307, 435, 456
BlsI GCNGC 4 cut(s) 97, 308, 436, 457
Bme1390I CCNGG 4 cut(s) 365, 416, 624, 823
Bme18I GGWCC 1 cut(s) 675
BmgT120I GGNCC 3 cut(s) 412, 453, 675
BmiI GGNNCC 5 cut(s) 73, 414, 578, 676, 696
BmrFI CCNGG 4 cut(s) 365, 416, 624, 823
BmtI GCTAGC 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 872
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 416, 823
BsaJI CCNNGG 3 cut(s) 301, 414, 515
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 370, 828
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 2 cut(s) 384, 961
BseBI CCWGG 2 cut(s) 365, 624
BseDI CCNNGG 3 cut(s) 301, 414, 515
BseGI GGATG 3 cut(s) 32, 871, 923
BseLI CCNNNNNNNGG 3 cut(s) 194, 370, 828
BseMI GCAATG 2 cut(s) 384, 961
BseMII CTCAG 3 cut(s) 408, 863, 984
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 3 cut(s) 193, 325, 971
BseXI GCAGC 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 450
BshFI GGCC 3 cut(s) 413, 455, 821
BsiHKAI GWGCWC 1 cut(s) 811
BsiSI CCGG 2 cut(s) 416, 822
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 3 cut(s) 194, 370, 828
BsmAI GTCTC 4 cut(s) 205, 397, 555, 983
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 3 cut(s) 413, 455, 821
Bsp1286I GDGCHC 1 cut(s) 811
Bsp143I GATC 4 cut(s) 12, 102, 877, 1011
BspACI CCGC 8 cut(s) 96, 256, 306, 309, 327, 349, 361, 456
BspANI GGCC 3 cut(s) 413, 455, 821
BspCNI CTCAG 3 cut(s) 407, 864, 985
BspLI GGNNCC 5 cut(s) 73, 414, 578, 676, 696
BspOI GCTAGC 1 cut(s) 524
BspPI GGATC 2 cut(s) 97, 885
BspQI GCTCTTC 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 2 cut(s) 384, 961
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 301, 414, 515
BssMI GATC 4 cut(s) 12, 102, 877, 1011
Bst2UI CCWGG 2 cut(s) 365, 624
Bst4CI ACNGT 3 cut(s) 139, 566, 1020
Bst6I CTCTTC 4 cut(s) 46, 155, 432, 465
BstC8I GCNNGC 4 cut(s) 247, 411, 522, 859
BstDEI CTNAG 3 cut(s) 394, 872, 993
BstDSI CCRYGG 2 cut(s) 301, 515
BstF5I GGATG 3 cut(s) 32, 871, 923
BstKTI GATC 4 cut(s) 15, 105, 880, 1014
BstMAI GTCTC 4 cut(s) 205, 397, 555, 983
BstMBI GATC 4 cut(s) 12, 102, 877, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 153, 255, 315, 602
BstNI CCWGG 2 cut(s) 365, 624
BstSCI CCNGG 4 cut(s) 363, 414, 622, 821
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 3 cut(s) 413, 455, 821
BtgI CCRYGG 2 cut(s) 301, 515
BtsCI GGATG 3 cut(s) 32, 871, 923
BtsIMutI CAGTG 2 cut(s) 470, 571
Cac8I GCNNGC 4 cut(s) 247, 411, 522, 859
Cfr13I GGNCC 3 cut(s) 412, 453, 675
CseI GACGC 2 cut(s) 307, 874
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 2 cut(s) 403, 664
CviAII CATG 1 cut(s) 724
CviQI GTAC 2 cut(s) 403, 664
DdeI CTNAG 3 cut(s) 394, 872, 993
DpnI GATC 4 cut(s) 14, 104, 879, 1013
DpnII GATC 4 cut(s) 12, 102, 877, 1011
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 4 cut(s) 46, 155, 432, 465
EarI CTCTTC 4 cut(s) 46, 155, 432, 465
EciI GGCGGA 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 363, 622
FaeI CATG 1 cut(s) 727
FaiI YATR 8 cut(s) 441, 588, 593, 599, 725, 897, 972, 981
FaqI GGGAC 1 cut(s) 640
FatI CATG 1 cut(s) 723
FbaI TGATCA 1 cut(s) 1011
Fnu4HI GCNGC 4 cut(s) 96, 307, 435, 456
FokI GGATG 3 cut(s) 19, 878, 930
Fsp4HI GCNGC 4 cut(s) 96, 307, 435, 456
FspBI CTAG 4 cut(s) 521, 837, 1034, 1039
GluI GCNGC 4 cut(s) 96, 307, 435, 456
GsaI CCCAGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 3 cut(s) 413, 455, 821
HapII CCGG 2 cut(s) 416, 822
HgaI GACGC 2 cut(s) 307, 874
Hin1II CATG 1 cut(s) 727
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 22, 323
HpaII CCGG 2 cut(s) 416, 822
HphI GGTGA 4 cut(s) 208, 643, 716, 916
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 5 cut(s) 66, 373, 694, 795, 813
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 5 cut(s) 69, 340, 765, 901, 944
HpyCH4III ACNGT 3 cut(s) 139, 566, 1020
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 255, 315, 602
HpyF3I CTNAG 3 cut(s) 394, 872, 993
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 727
Ksp22I TGATCA 1 cut(s) 1011
Kzo9I GATC 4 cut(s) 12, 102, 877, 1011
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 4 cut(s) 694, 814, 934, 958
Lsp1109I GCAGC 1 cut(s) 421
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 4 cut(s) 521, 837, 1034, 1039
MaeII ACGT 1 cut(s) 165
MalI GATC 4 cut(s) 14, 104, 879, 1013
MbiI CCGCTC 1 cut(s) 458
MboI GATC 4 cut(s) 12, 102, 877, 1011
MboII GAAGA 8 cut(s) 33, 142, 419, 452, 455, 503, 646, 719
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 811
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 672
MseI TTAA 3 cut(s) 180, 236, 789
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 2 cut(s) 416, 822
MspR9I CCNGG 4 cut(s) 365, 416, 624, 823
MvaI CCWGG 2 cut(s) 365, 624
MwoI GCNNNNNNNGC 4 cut(s) 153, 255, 315, 602
NciI CCSGG 2 cut(s) 416, 823
NdeII GATC 4 cut(s) 12, 102, 877, 1011
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 1 cut(s) 727
NlaIV GGNNCC 5 cut(s) 73, 414, 578, 676, 696
PciSI GCTCTTC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 2 cut(s) 537, 809
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 97, 308, 436, 457
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 363, 622
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 2 cut(s) 363, 622
PspN4I GGNNCC 5 cut(s) 73, 414, 578, 676, 696
PspPI GGNCC 3 cut(s) 412, 453, 675
PsrI GAACNNNNNNTAC 2 cut(s) 734, 766
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 2 cut(s) 404, 665
RsaNI GTAC 2 cut(s) 403, 664
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 3 cut(s) 180, 236, 789
SatI GCNGC 4 cut(s) 96, 307, 435, 456
Sau3AI GATC 4 cut(s) 12, 102, 877, 1011
Sau96I GGNCC 3 cut(s) 412, 453, 675
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 4 cut(s) 365, 416, 624, 823
SduI GDGCHC 1 cut(s) 811
SexAI ACCWGGT 1 cut(s) 622
SinI GGWCC 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
SsiI CCGC 8 cut(s) 96, 256, 306, 309, 327, 349, 361, 456
SspMI CTAG 4 cut(s) 521, 837, 1034, 1039
StyD4I CCNGG 4 cut(s) 363, 414, 622, 821
TaaI ACNGT 3 cut(s) 139, 566, 1020
TaiI ACGT 1 cut(s) 168
TaqI TCGA 4 cut(s) 321, 342, 540, 880
TatI WGTACW 1 cut(s) 402
TauI GCSGC 3 cut(s) 98, 309, 458
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 3 cut(s) 180, 236, 789
Tru9I TTAA 3 cut(s) 180, 236, 789
TscAI CASTG 2 cut(s) 470, 571
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 4 cut(s) 14, 456, 504, 959
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 2 cut(s) 470, 571
VpaK11BI GGWCC 1 cut(s) 675
VspI ATTAAT 1 cut(s) 789
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XspI CTAG 4 cut(s) 521, 837, 1034, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.