Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Reverse (-)

11957591 .. 11958574

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCTTCCAGCACCAAAGAAATAGCCTCGGAGTTCCTTCCCTTCATCAGATTCTACAAAGATGGCTCGGTGGAACGCCTTTTGGACTCTCCATACGTGCCCCCATCTCCAAATCAAAACCCTGAAACTGGTGTCTCCTCCAAAGATATCACCATCTCAGACAACCCCAATATCTCCGCTCGCCTTTACCTCCCAAACCTCCCTCAAAACCAATCCCAAAAGCTTCCCATCTTGGTCTACTTCCATGGTGGTGGGTTTTGCATTGAATCCGCCTTCTCATTTCTTGACACCCGCTATCTCAACAGCTTGGTCTCAGAAGCCCGAGTCCTAGCCATCTCTGTTGACTACAGACTCGCCCCGGAGAACCCACTTCCTATTGCTTACGAAGATTGTTGGGATGCTCTTCGATGGGTTGCTTCTCACTCAAGCAACAATGACTCAGGCGGTGACAAAGAGCCATGGTTAGTCAGGTATGGAGATTTTGATAGGCTTTACATTGGTGGTGATAGTGCAGGTGGAAACATTGCACATAATATGGCTATGAAGGCAGGAGTTGAGAGCTTGTGTGGTGGTGTCAAAATTTTGGGCGCATTTTTATCCCACCCTTATTTTTGGAGTTCCAAGCCAATTGGGTCAGAGCCTAAAGGTGAAGACTTTGAGAAAGCTGTCCCTTATTTGATTTGGGACTTTGTTTATCCATCAGCTCCCGGTGGGGTCGACAATCCAATGTTAAATCCGGCGGGTGAGGGTAAACCGAGCCTGGCTGGACTTGCGTGCTCTCGGCTGCTCGTGTGTGTTGCTGGAAAAGATGCGCTGAGGGACCGAGGTGTTTGGTATTACGATTTGGTGAAGGAGAGTGGGTGGAAAGGAGAAGTGGAGCTGTTTGAAGTGGAAGGAGAGGACCATTGCTATCATATCTTCTGTGTGAGTGAAACTGAGAATGTTAAGAAAATGATCAAACGCTTGGCTTCTTTTCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016787 GO:0016788 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019748 GO:0033987 GO:0044237 GO:0044249 GO:0044550 GO:0046287 GO:0046483 GO:0052689 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00943 ko01110 map00943 map01110

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

328

Amino Acids

36.13

Weight (kDa)

5.02

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	63 - 120	2.1e-06	Carboxylesterase family
BD-FAE	PF20434	67 - 188	8.4e-12	BD-FAE
Abhydrolase_3	PF07859	78 - 305	2e-47	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	237, 717
AciI	CCGC	5 cut(s)	177, 270, 292, 444, 740
AcsI	RAATTY	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	266, 887
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	6 cut(s)	223, 306, 561, 665, 704, 880
AluI	AGCT	6 cut(s)	223, 306, 561, 665, 704, 880
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	2 cut(s)	139, 316
Ama87I	CYCGRG	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	784
ApoI	RAATTY	1 cut(s)	579
AspLEI	GCGC	2 cut(s)	590, 814
AspS9I	GGNCC	2 cut(s)	820, 901
AsuC2I	CCSGG	2 cut(s)	359, 708
AsuHPI	GGTGA	6 cut(s)	142, 458, 515, 659, 755, 859
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	2 cut(s)	820, 901
BaeGI	GKGCMC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	779
BbvCI	CCTCAGC	1 cut(s)	815
BbvI	GCAGC	1 cut(s)	771
BccI	CCATC	7 cut(s)	56, 112, 161, 236, 341, 402, 706
BciT130I	CCWGG	1 cut(s)	761
BclI	TGATCA	1 cut(s)	954
BcnI	CCSGG	2 cut(s)	359, 708
BcoDI	GTCTC	2 cut(s)	139, 316
BfaI	CTAG	2 cut(s)	329, 982
BfmI	CTRYAG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	1 cut(s)	785
BlsI	GCNGC	1 cut(s)	786
Bme1390I	CCNGG	3 cut(s)	359, 708, 761
Bme18I	GGWCC	2 cut(s)	820, 901
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	820, 901
BmiI	GGNNCC	1 cut(s)	821
BmrFI	CCNGG	3 cut(s)	359, 708, 761
BmsI	GCATC	2 cut(s)	388, 799
BpiI	GAAGAC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	2 cut(s)	359, 708
BsaAI	YACGTR	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	5 cut(s)	27, 244, 357, 458, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	2 cut(s)	522, 904
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	5 cut(s)	27, 244, 357, 458, 823
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	2 cut(s)	522, 904
BseMII	CTCAG	5 cut(s)	171, 327, 453, 806, 927
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	771
BsgI	GTGCAG	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	779
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	359, 708, 737
BslFI	GGGAC	3 cut(s)	653, 698, 833
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	139, 316
BsmFI	GGGAC	3 cut(s)	653, 698, 833
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	102, 779
Bsp143I	GATC	1 cut(s)	954
Bsp19I	CCATGG	2 cut(s)	244, 458
BspACI	CCGC	5 cut(s)	177, 270, 292, 444, 740
BspCNI	CTCAG	5 cut(s)	170, 326, 452, 807, 928
BspLI	GGNNCC	1 cut(s)	821
BspMI	ACCTGC	1 cut(s)	503
BspQI	GCTCTTC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	316
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	522, 904
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	27, 244, 357, 458, 823
BssMI	GATC	1 cut(s)	954
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	2 cut(s)	244, 458
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	761
Bst6I	CTCTTC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	181, 775
BstDEI	CTNAG	5 cut(s)	157, 313, 439, 815, 936
BstDSI	CCRYGG	2 cut(s)	244, 458
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	2 cut(s)	590, 814
BstKTI	GATC	1 cut(s)	957
BstMAI	GTCTC	2 cut(s)	139, 316
BstMBI	GATC	1 cut(s)	954
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 770
BstNI	CCWGG	1 cut(s)	761
BstSCI	CCNGG	3 cut(s)	357, 706, 759
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	771
BstV2I	GAAGAC	1 cut(s)	657
BstXI	CCANNNNNNTGG	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	244, 458
BtsCI	GGATG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	181, 775
CfoI	GCGC	2 cut(s)	590, 814
Cfr13I	GGNCC	2 cut(s)	820, 901
CviAII	CATG	2 cut(s)	245, 459
DdeI	CTNAG	5 cut(s)	157, 313, 439, 815, 936
DpnI	GATC	1 cut(s)	956
DpnII	GATC	1 cut(s)	954
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	244, 458
Eco31I	GGTCTC	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	820, 901
Eco88I	CYCGRG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	759
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	244, 458
ErhI	CCWWGG	2 cut(s)	244, 458
FaeI	CATG	2 cut(s)	248, 462
FaiI	YATR	8 cut(s)	94, 246, 460, 474, 531, 536, 542, 915
FaqI	GGGAC	3 cut(s)	653, 698, 833
FatI	CATG	2 cut(s)	244, 458
FauI	CCCGC	2 cut(s)	299, 733
FbaI	TGATCA	1 cut(s)	954
FblI	GTMKAC	2 cut(s)	237, 717
Fnu4HI	GCNGC	1 cut(s)	785
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	785
FspBI	CTAG	2 cut(s)	329, 982
GlaI	GCGC	2 cut(s)	589, 813
GluI	GCNGC	1 cut(s)	785
HapII	CCGG	3 cut(s)	359, 708, 737
HhaI	GCGC	2 cut(s)	590, 814
Hin1II	CATG	2 cut(s)	248, 462
Hin6I	GCGC	2 cut(s)	588, 812
HinP1I	GCGC	2 cut(s)	588, 812
HincII	GTYRAC	2 cut(s)	343, 718
HindII	GTYRAC	2 cut(s)	343, 718
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	6 cut(s)	51, 86, 266, 324, 351, 437
HpaII	CCGG	3 cut(s)	359, 708, 737
HphI	GGTGA	6 cut(s)	142, 458, 515, 659, 755, 859
Hpy166II	GTNNAC	4 cut(s)	238, 343, 718, 752
Hpy188I	TCNGA	5 cut(s)	31, 50, 160, 316, 637
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	4 cut(s)	238, 343, 718, 752
HpyAV	CCTTC	6 cut(s)	47, 52, 283, 538, 844, 887
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	261, 512, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 770
HpyF3I	CTNAG	5 cut(s)	157, 313, 439, 815, 936
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	248, 462
HspAI	GCGC	2 cut(s)	588, 812
Ksp22I	TGATCA	1 cut(s)	954
Kzo9I	GATC	1 cut(s)	954
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	709, 877
Lsp1109I	GCAGC	1 cut(s)	771
LweI	GCATC	2 cut(s)	388, 799
MaeI	CTAG	2 cut(s)	329, 982
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	956
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	1 cut(s)	954
MboII	GAAGA	4 cut(s)	395, 398, 662, 910
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	102, 779
MluCI	AATT	2 cut(s)	579, 627
MlyI	GAGTC	4 cut(s)	80, 333, 345, 431
MnlI	CCTC	9 cut(s)	37, 148, 200, 209, 213, 739, 810, 818, 892
MseI	TTAA	2 cut(s)	731, 945
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	3 cut(s)	359, 708, 737
MspR9I	CCNGG	3 cut(s)	359, 708, 761
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	2 cut(s)	545, 770
NciI	CCSGG	2 cut(s)	359, 708
NcoI	CCATGG	2 cut(s)	244, 458
NdeII	GATC	1 cut(s)	954
NlaIII	CATG	2 cut(s)	248, 462
NlaIV	GGNNCC	1 cut(s)	821
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	51, 266
PkrI	GCNGC	1 cut(s)	786
PleI	GAGTC	4 cut(s)	80, 332, 345, 431
PpsI	GAGTC	4 cut(s)	80, 332, 345, 431
Ppu21I	YACGTR	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	821
PspPI	GGNCC	2 cut(s)	820, 901
RseI	CAYNNNNRTG	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	716
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	731, 945
SatI	GCNGC	1 cut(s)	785
Sau3AI	GATC	1 cut(s)	954
Sau96I	GGNCC	2 cut(s)	820, 901
SchI	GAGTC	4 cut(s)	80, 333, 345, 431
ScrFI	CCNGG	3 cut(s)	359, 708, 761
SduI	GDGCHC	2 cut(s)	102, 779
SfaNI	GCATC	2 cut(s)	388, 799
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	820, 901
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	2 cut(s)	579, 627
SsiI	CCGC	5 cut(s)	177, 270, 292, 444, 740
SspMI	CTAG	2 cut(s)	329, 982
StyD4I	CCNGG	3 cut(s)	357, 706, 759
StyI	CCWWGG	2 cut(s)	244, 458
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	406, 717
TaqII	GACCGA	1 cut(s)	837
TasI	AATT	2 cut(s)	579, 627
TfiI	GAWTC	2 cut(s)	51, 266
Tru1I	TTAA	2 cut(s)	731, 945
Tru9I	TTAA	2 cut(s)	731, 945
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	784
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	34, 557
VpaK11BI	GGWCC	2 cut(s)	820, 901
XapI	RAATTY	1 cut(s)	579
XmiI	GTMKAC	2 cut(s)	237, 717
XspI	CTAG	2 cut(s)	329, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.