MD16G1188600.v1.1

Arm repeat protein interacting with

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000306
Physical Location & Seq
Reverse (-)
16364037 .. 16369852
5816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1188600.v1.1.491

Sequence Viewer

Length: 2115 bp
ATGGAGTTGCAGAGGCGCCAGGACCAGAGACGTCCAGAGCGGAAGGGGCAGAAGCGGAAGCTAGAGGAGGAAACCGGCGGCGAGCGGGAGATCTCGGTGAAGTCCGGCGAAGCCAGAAAGGCGCTGCTGAGCGAGGTCAGTGAGCAGGTGAAGGTCCTCAACTCCACTTTCTCTTGGAGCGAAGCCGATCGAGCTTCTGCTAAGCGCGCCACGCACGTCCTCGCCGAGCTCGCCAAGAACGAGGAGGTAGTGAGCGTGATCGTCGAAGGCGGCGCGGTTCCGGCTCTGGTGAAACATCTTCAAGCTCCGCCGTTAAGCGACGGCGACGGGAGTTCGAAGCCGTTCGAACACGAGGTTGAGAAGGGAAGTGCCTTTGCCCTGGGCCTTCTCGCAGTTAAGCCGGAGCACCAACAACTCATTGTTGACACTGGCGCATTGGCTCATCTTGTGGATTTGTTAAAGAGGCACAAGGATAGTCCTGTATCTCGAGCTTTGTATAGCGTCATTCGTAGAGCTGCTGATGCCATCACCAACCTTGCTCATGAGAATAGCAACATTAAAACCCGTGTCAGAATAGAAGGTGGAATTCCACCTCTAGTTGAGTTGCTTGAATTTGCTGATACCAAGGTGCAAAGAGCAGCTGCTGGAGCATTACGAACCCTGGCATTTAAAAATGATGAGAATAAGAATCAGATTGTTGAATGCAATGCGCTTCCTACTCTCATTCTAATGCTTCGGTCTGAGGATGCTGCAATACATTACGAAGCGGTTGGTGTTATTGGAAATCTGGTACATTCATCTCCGATCATAAAGAAAGAAGTTCTTCTTGCGGGAGCTTTACAACCTGTCATTGGATTGCTTAGTTCCTGCTGCTCTGAGAGCCAAAGAGAAGCAGCTTTATTACTTGGACAATTTGCTGCAACTGATTCAGATTGCAAGGTTCACATTGTACAGAGGGGTGCTGTTCGGCCTCTGATTGAGATGCTTCAGTCCCCTGACGTACAACTAAAGGAGATGTCAGCTTTTGCATTGGGGAGACTGGCACAGGACTCAAACAACCAAGCTGGTATTGCTCACAATGGTGGTTTAGTGCCATTGCTGAAGCTTCTTGATTCGAAAAATGGTTCTCTACAACATAATGCCGCATTTACTCTTTATGGCCTTGCAGATAATGAGGATAATGTTTCCGATTATATCAGGGTTGGAGGTGTTCAGAAGCTGCAAGAGGGAGAATTTATTTTTCAAGCAACAAAGGATTGTGTGACCAAAACATTGAAAAGATTAGAGGAGAAGATTCATGGACGAGTTTTATCCCATTTGTTATATTTGATGCGTGTAGCAGAGAGGGCTGTCCAAAGACGAGTTGCTTTGGCTTTTGCTCATCTTTGTTCGCCAGATGATCTAAGAACAGTATTCATCGACAACAATGGGCTGGAGTTGCTTCTCGGGCTTCTTGGTTCCAGTGCCCATAAACAGCAACTTGATGGTGCTACGGCTTTGTATAAGCTAGCCAACAAAGCCATGACTCTTTCTCCTGTGGATGCAGCTCCCCCATCTCCAACACCACAGGTCTATCTGGGGGAGCAGTATGTAAACAATCCTACGCTGTCCGATGTTATTTTCTTAGTTGAAGGTAGACGGTTCTATGCTCACAGAATTTGCCTGCTAGCTTCTTCAGATGCCTTCCGTGCAATGTTTGATGGTGGTTACCGGGAGAAGGATGCGAGGGACATTGAGATACCAAATATTAGATGGGAGGTTTTCGAGTTGATGATGAGATTTATATACACTGGATCAGTCGACATTACTATTGATATTGCTCAAGATCTCCTCAGAGCTGCTGATCAGTATCTTTTGGAGGGACTCAAGCGGCTTTGTGAGTATACAATAGCACAGGACATATCGTTGGACAACGTTTCAAACATGTATGAACTTTCAGAAGCCTTCCATGCGATGTCATTGAGGCACACATGCATATTGTTTATTTTGGAGCAGTTCGATAAATTGAGTGCCAGACCAGGGAACTCTCACCTGATCATGCGTATATTACCCGAGATCCGCACTTACTTTACCAAAGCGCTTACTAAGCCTAACCCACATAGCTTGCGGCTATAA

Protein Analysis

705

Amino Acids

77.86

Weight (kDa)

6.52

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 130 - 381 8.5e-18 ARMC5
ARM_PUB PF25598 174 - 407 6.3e-08 Plant U-box protein ARM repeat region
Arm PF00514 190 - 222 4.8e-07 Armadillo/beta-catenin-like repeat
Arm PF00514 225 - 264 1.9e-07 Armadillo/beta-catenin-like repeat
BTB PF00651 532 - 632 1.5e-24 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
AatII GACGTC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 15
AccBSI CCGCTC 2 cut(s) 40, 85
AccI GTMKAC 3 cut(s) 1636, 1800, 1883
AccII CGCG 2 cut(s) 207, 275
AclI AACGTT 1 cut(s) 1914
AclWI GGATC 2 cut(s) 1801, 2050
AcsI RAATTY 4 cut(s) 585, 611, 1232, 1656
AcuI CTGAAG 3 cut(s) 971, 1121, 1659
AcyI GRCGYC 2 cut(s) 16, 31
AfaI GTAC 3 cut(s) 792, 951, 1002
AfeI AGCGCT 1 cut(s) 2079
AfiI CCNNNNNNNGG 3 cut(s) 851, 1717, 2019
AflIII ACRYGT 1 cut(s) 1923
AgsI TTSAA 7 cut(s) 302, 611, 701, 1244, 1276, 1631, 1920
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 4 cut(s) 18, 378, 660, 2017
AleI CACNNNNGTG 1 cut(s) 1080
Alw21I GWGCWC 2 cut(s) 231, 408
Alw26I GTCTC 2 cut(s) 22, 1030
AlwI GGATC 2 cut(s) 1801, 2050
AlwNI CAGNNNCTG 2 cut(s) 644, 1219
Ama87I CYCGRG 3 cut(s) 486, 1445, 2051
Aor51HI AGCGCT 1 cut(s) 2079
AoxI GGCC 3 cut(s) 382, 968, 1159
ApoI RAATTY 4 cut(s) 585, 611, 1232, 1656
Asp700I GAANNNNTTC 2 cut(s) 341, 822
AspLEI GCGC 8 cut(s) 18, 124, 207, 209, 275, 434, 712, 2080
AspS9I GGNCC 3 cut(s) 22, 154, 382
AsuC2I CCSGG 1 cut(s) 1712
AsuHPI GGTGA 5 cut(s) 109, 160, 301, 520, 2021
AsuII TTCGAA 3 cut(s) 335, 345, 1115
AsuNHI GCTAGC 2 cut(s) 1507, 1666
AvaI CYCGRG 3 cut(s) 486, 1445, 2051
AvaII GGWCC 2 cut(s) 22, 154
BaeGI GKGCMC 1 cut(s) 1468
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BanI GGYRCC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 231, 408
BccI CCATC 5 cut(s) 533, 1478, 1561, 1694, 1746
BceAI ACGGC 4 cut(s) 295, 325, 337, 1509
BciT130I CCWGG 4 cut(s) 20, 380, 662, 2019
BclI TGATCA 2 cut(s) 1843, 2034
BcnI CCSGG 1 cut(s) 1712
BcoDI GTCTC 2 cut(s) 22, 1030
BfaI CTAG 4 cut(s) 62, 596, 1508, 1667
BfoI RGCGCY 3 cut(s) 19, 125, 2081
BfuAI ACCTGC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 119
BglII AGATCT 2 cut(s) 90, 1825
BlpI GCTNAGC 2 cut(s) 128, 201
Bme1390I CCNGG 5 cut(s) 20, 380, 662, 1712, 2019
Bme18I GGWCC 2 cut(s) 22, 154
BmeT110I CYCGRG 3 cut(s) 486, 1445, 2051
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 22, 154, 382
BmiI GGNNCC 3 cut(s) 17, 279, 1459
BmrFI CCNGG 5 cut(s) 20, 380, 662, 1712, 2019
BmsI GCATC 7 cut(s) 511, 736, 972, 1320, 1531, 1669, 1711
BmtI GCTAGC 2 cut(s) 1511, 1670
BpmI CTGGAG 2 cut(s) 666, 1454
Bpu1102I GCTNAGC 2 cut(s) 128, 201
Bpu14I TTCGAA 3 cut(s) 335, 345, 1115
BpuEI CTTGAG 2 cut(s) 1806, 1850
BpuMI CCSGG 1 cut(s) 1712
BsaBI GATNNNNATC 1 cut(s) 1848
BsaHI GRCGYC 2 cut(s) 16, 31
BsaJI CCNNGG 5 cut(s) 378, 379, 624, 660, 2018
BsaXI ACNNNNNCTCC 2 cut(s) 1516, 1546
Bsc4I CCNNNNNNNGG 3 cut(s) 851, 1717, 2019
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 433, 1044, 1461, 1795
Bse3DI GCAATG 3 cut(s) 712, 1094, 1698
Bse8I GATNNNNATC 1 cut(s) 1848
BseBI CCWGG 4 cut(s) 20, 380, 662, 2019
BseDI CCNNGG 5 cut(s) 378, 379, 624, 660, 2018
BseGI GGATG 3 cut(s) 751, 1546, 1726
BseJI GATNNNNATC 1 cut(s) 1848
BseLI CCNNNNNNNGG 3 cut(s) 851, 1717, 2019
BseMI GCAATG 3 cut(s) 712, 1094, 1698
BseMII CTCAG 4 cut(s) 119, 732, 867, 1846
BseNI ACTGG 4 cut(s) 433, 1044, 1461, 1795
BsePI GCGCGC 1 cut(s) 205
BseRI GAGGAG 4 cut(s) 80, 257, 1301, 1820
BseSI GKGCMC 1 cut(s) 1468
Bsh1236I CGCG 2 cut(s) 207, 275
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 384, 970, 1161
BshNI GGYRCC 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 231, 408
BsiHKCI CYCGRG 3 cut(s) 486, 1445, 2051
BsiSI CCGG 5 cut(s) 75, 105, 281, 401, 1711
BslFI GGGAC 3 cut(s) 976, 1742, 1875
BslI CCNNNNNNNGG 3 cut(s) 851, 1717, 2019
BsmAI GTCTC 2 cut(s) 22, 1030
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 3 cut(s) 976, 1742, 1875
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 3 cut(s) 384, 970, 1161
BsoBI CYCGRG 3 cut(s) 486, 1445, 2051
Bsp119I TTCGAA 3 cut(s) 335, 345, 1115
Bsp1286I GDGCHC 3 cut(s) 231, 408, 1468
Bsp1407I TGTACA 1 cut(s) 949
Bsp1720I GCTNAGC 2 cut(s) 128, 201
BspANI GGCC 3 cut(s) 384, 970, 1161
BspCNI CTCAG 4 cut(s) 120, 733, 868, 1845
BspFNI CGCG 2 cut(s) 207, 275
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 17, 279, 1459
BspMI ACCTGC 1 cut(s) 136
BspOI GCTAGC 2 cut(s) 1511, 1670
BspPI GGATC 2 cut(s) 1801, 2050
BspT104I TTCGAA 3 cut(s) 335, 345, 1115
BspT107I GGYRCC 1 cut(s) 15
BsrBI CCGCTC 2 cut(s) 40, 85
BsrDI GCAATG 3 cut(s) 712, 1094, 1698
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 949
BsrI ACTGG 4 cut(s) 433, 1044, 1461, 1795
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 5 cut(s) 378, 379, 624, 660, 2018
BssHII GCGCGC 1 cut(s) 205
BssNAI GTATAC 1 cut(s) 1884
BssNI GRCGYC 2 cut(s) 16, 31
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 624
Bst1107I GTATAC 1 cut(s) 1884
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 4 cut(s) 20, 380, 662, 2019
Bst4CI ACNGT 2 cut(s) 1411, 1641
BstACI GRCGYC 2 cut(s) 16, 31
BstAUI TGTACA 1 cut(s) 949
BstBI TTCGAA 3 cut(s) 335, 345, 1115
BstC8I GCNNGC 7 cut(s) 83, 207, 231, 1509, 1664, 1668, 2105
BstDEI CTNAG 9 cut(s) 128, 201, 741, 860, 876, 1403, 1624, 1832, 2085
BstEII GGTNACC 1 cut(s) 1706
BstF5I GGATG 3 cut(s) 751, 1546, 1726
BstFNI CGCG 2 cut(s) 207, 275
BstH2I RGCGCY 3 cut(s) 19, 125, 2081
BstHHI GCGC 8 cut(s) 18, 124, 207, 209, 275, 434, 712, 2080
BstMAI GTCTC 2 cut(s) 22, 1030
BstMCI CGRYCG 1 cut(s) 190
BstNI CCWGG 4 cut(s) 20, 380, 662, 2019
BstNSI RCATGY 2 cut(s) 1927, 1974
BstPI GGTNACC 1 cut(s) 1706
BstSCI CCNGG 5 cut(s) 18, 378, 660, 1710, 2017
BstSLI GKGCMC 1 cut(s) 1468
BstUI CGCG 2 cut(s) 207, 275
BstX2I RGATCY 3 cut(s) 90, 1825, 2055
BstYI RGATCY 3 cut(s) 90, 1825, 2055
BstZ17I GTATAC 1 cut(s) 1884
BsuRI GGCC 3 cut(s) 384, 970, 1161
BtgZI GCGATG 1 cut(s) 1967
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 751, 1546, 1726
BtsIMutI CAGTG 4 cut(s) 145, 426, 1468, 1788
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 7 cut(s) 83, 207, 231, 1509, 1664, 1668, 2105
CaiI CAGNNNCTG 2 cut(s) 644, 1219
CciI TCATGA 1 cut(s) 541
CfoI GCGC 8 cut(s) 18, 124, 207, 209, 275, 434, 712, 2080
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 22, 154, 382
CseI GACGC 1 cut(s) 490
Csp6I GTAC 3 cut(s) 791, 950, 1001
CspCI CAANNNNNGTGG 1 cut(s) 2085
CviAII CATG 7 cut(s) 542, 1298, 1522, 1924, 1949, 1971, 2038
CviQI GTAC 3 cut(s) 791, 950, 1001
DdeI CTNAG 9 cut(s) 128, 201, 741, 860, 876, 1403, 1624, 1832, 2085
DinI GGCGCC 1 cut(s) 17
DraI TTTAAA 1 cut(s) 670
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 22, 154
Eco47III AGCGCT 1 cut(s) 2079
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 3 cut(s) 971, 1121, 1659
Eco88I CYCGRG 3 cut(s) 486, 1445, 2051
Eco91I GGTNACC 1 cut(s) 1706
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 1706
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 4 cut(s) 18, 378, 660, 2017
EcoT14I CCWWGG 1 cut(s) 624
EcoT22I ATGCAT 1 cut(s) 1976
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 17
EheI GGCGCC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 7 cut(s) 545, 1301, 1525, 1927, 1952, 1974, 2041
FalI AAGNNNNNCTT 4 cut(s) 807, 839, 810, 842
FaqI GGGAC 3 cut(s) 976, 1742, 1875
FatI CATG 7 cut(s) 541, 1297, 1521, 1923, 1948, 1970, 2037
FauI CCCGC 2 cut(s) 78, 823
FbaI TGATCA 2 cut(s) 1843, 2034
FblI GTMKAC 3 cut(s) 1636, 1800, 1883
FokI GGATG 3 cut(s) 758, 1553, 1733
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 4 cut(s) 62, 596, 1508, 1667
GlaI GCGC 8 cut(s) 17, 123, 206, 208, 274, 433, 711, 2079
GsuI CTGGAG 2 cut(s) 666, 1454
HaeII RGCGCY 3 cut(s) 19, 125, 2081
HaeIII GGCC 3 cut(s) 384, 970, 1161
HapII CCGG 5 cut(s) 75, 105, 281, 401, 1711
HgaI GACGC 1 cut(s) 490
HhaI GCGC 8 cut(s) 18, 124, 207, 209, 275, 434, 712, 2080
Hin1I GRCGYC 2 cut(s) 16, 31
Hin1II CATG 7 cut(s) 545, 1301, 1525, 1927, 1952, 1974, 2041
Hin6I GCGC 8 cut(s) 16, 122, 205, 207, 273, 432, 710, 2078
HinP1I GCGC 8 cut(s) 16, 122, 205, 207, 273, 432, 710, 2078
HincII GTYRAC 2 cut(s) 424, 1801
HindII GTYRAC 2 cut(s) 424, 1801
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 7 cut(s) 688, 926, 1049, 1112, 1294, 1525, 1863
HpaII CCGG 5 cut(s) 75, 105, 281, 401, 1711
HphI GGTGA 5 cut(s) 109, 160, 301, 520, 2021
Hpy166II GTNNAC 6 cut(s) 424, 943, 1594, 1637, 1801, 1884
Hpy188III TCNNGA 5 cut(s) 35, 486, 542, 1109, 1823
Hpy8I GTNNAC 6 cut(s) 424, 943, 1594, 1637, 1801, 1884
Hpy99I CGWCG 3 cut(s) 266, 323, 329
HpyCH4III ACNGT 2 cut(s) 1411, 1641
HpyCH4IV ACGT 4 cut(s) 31, 216, 999, 1914
HpyF3I CTNAG 9 cut(s) 128, 201, 741, 860, 876, 1403, 1624, 1832, 2085
HpySE526I ACGT 4 cut(s) 31, 216, 999, 1914
Hsp92I GRCGYC 2 cut(s) 16, 31
Hsp92II CATG 7 cut(s) 545, 1301, 1525, 1927, 1952, 1974, 2041
HspAI GCGC 8 cut(s) 16, 122, 205, 207, 273, 432, 710, 2078
KasI GGCGCC 1 cut(s) 15
Ksp22I TGATCA 2 cut(s) 1843, 2034
LmnI GCTCC 8 cut(s) 177, 310, 403, 647, 833, 1552, 1582, 1990
LweI GCATC 7 cut(s) 511, 736, 972, 1320, 1531, 1669, 1711
MaeI CTAG 4 cut(s) 62, 596, 1508, 1667
MaeII ACGT 4 cut(s) 31, 216, 999, 1914
MaeIII GTNAC 2 cut(s) 1261, 1706
MbiI CCGCTC 2 cut(s) 40, 85
MboII GAAGA 4 cut(s) 290, 815, 1303, 1665
MflI RGATCY 3 cut(s) 90, 1825, 2055
MhlI GDGCHC 3 cut(s) 231, 408, 1468
MluCI AATT 6 cut(s) 585, 611, 911, 1232, 1656, 2003
Mly113I GGCGCC 1 cut(s) 16
MlyI GAGTC 3 cut(s) 1043, 1519, 1857
MmeI TCCRAC 3 cut(s) 1183, 1583, 1887
Mph1103I ATGCAT 1 cut(s) 1976
MroXI GAANNNNTTC 2 cut(s) 341, 822
MseI TTAA 5 cut(s) 314, 396, 458, 558, 669
MslI CAYNNNNRTG 2 cut(s) 728, 1080
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 5 cut(s) 75, 105, 281, 401, 1711
MspR9I CCNGG 5 cut(s) 20, 380, 662, 1712, 2019
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 4 cut(s) 20, 380, 662, 2019
MvnI CGCG 2 cut(s) 207, 275
NarI GGCGCC 1 cut(s) 16
NciI CCSGG 1 cut(s) 1712
NheI GCTAGC 2 cut(s) 1507, 1666
NlaIII CATG 7 cut(s) 545, 1301, 1525, 1927, 1952, 1974, 2041
NlaIV GGNNCC 3 cut(s) 17, 279, 1459
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 1261
NsiI ATGCAT 1 cut(s) 1976
NspI RCATGY 2 cut(s) 1927, 1974
NspV TTCGAA 3 cut(s) 335, 345, 1115
OliI CACNNNNGTG 1 cut(s) 1080
PaeR7I CTCGAG 1 cut(s) 486
PagI TCATGA 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 136
PasI CCCWGGG 1 cut(s) 379
PauI GCGCGC 1 cut(s) 205
PciI ACATGT 1 cut(s) 1923
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 237
PctI GAATGC 1 cut(s) 707
PdmI GAANNNNTTC 2 cut(s) 341, 822
PfeI GAWTC 4 cut(s) 688, 926, 1112, 1294
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 3 cut(s) 1043, 1519, 1857
PluTI GGCGCC 1 cut(s) 19
PpsI GAGTC 3 cut(s) 1043, 1519, 1857
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 1923
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 1914
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 4 cut(s) 18, 378, 660, 2017
PspEI GGTNACC 1 cut(s) 1706
PspGI CCWGG 4 cut(s) 18, 378, 660, 2017
PspN4I GGNNCC 3 cut(s) 17, 279, 1459
PspPI GGNCC 3 cut(s) 22, 154, 382
PspPPI RGGWCCY 1 cut(s) 154
PstNI CAGNNNCTG 2 cut(s) 644, 1219
PsuI RGATCY 3 cut(s) 90, 1825, 2055
PteI GCGCGC 1 cut(s) 205
PvuI CGATCG 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 3 cut(s) 792, 951, 1002
RsaNI GTAC 3 cut(s) 791, 950, 1001
RseI CAYNNNNRTG 2 cut(s) 728, 1080
SacI GAGCTC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 1799
SaqAI TTAA 5 cut(s) 314, 396, 458, 558, 669
Sau96I GGNCC 3 cut(s) 22, 154, 382
SchI GAGTC 3 cut(s) 1043, 1519, 1857
ScrFI CCNGG 5 cut(s) 20, 380, 662, 1712, 2019
SduI GDGCHC 3 cut(s) 231, 408, 1468
SfaNI GCATC 7 cut(s) 511, 736, 972, 1320, 1531, 1669, 1711
SfoI GGCGCC 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 486
SfuI TTCGAA 3 cut(s) 335, 345, 1115
SinI GGWCC 2 cut(s) 22, 154
SlaI CTCGAG 1 cut(s) 486
SmiMI CAYNNNNRTG 2 cut(s) 728, 1080
SmlI CTYRAG 3 cut(s) 486, 1821, 1865
SmoI CTYRAG 3 cut(s) 486, 1821, 1865
Sse9I AATT 6 cut(s) 585, 611, 911, 1232, 1656, 2003
SspDI GGCGCC 1 cut(s) 15
SspI AATATT 1 cut(s) 1747
SspMI CTAG 4 cut(s) 62, 596, 1508, 1667
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 5 cut(s) 18, 378, 660, 1710, 2017
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 2 cut(s) 1411, 1641
TaiI ACGT 4 cut(s) 34, 219, 1002, 1917
TaqII GACCGA 1 cut(s) 726
TasI AATT 6 cut(s) 585, 611, 911, 1232, 1656, 2003
TatI WGTACW 1 cut(s) 949
TauI GCSGC 5 cut(s) 81, 273, 1145, 1873, 2110
TfiI GAWTC 4 cut(s) 688, 926, 1112, 1294
Tru1I TTAA 5 cut(s) 314, 396, 458, 558, 669
Tru9I TTAA 5 cut(s) 314, 396, 458, 558, 669
TscAI CASTG 4 cut(s) 145, 433, 1468, 1795
TseFI GTSAC 1 cut(s) 1261
Tsp45I GTSAC 1 cut(s) 1261
TspDTI ATGAA 4 cut(s) 786, 1286, 1405, 1944
TspGWI ACGGA 1 cut(s) 1676
TspRI CASTG 4 cut(s) 145, 433, 1468, 1795
VpaK11BI GGWCC 2 cut(s) 22, 154
XapI RAATTY 4 cut(s) 585, 611, 1232, 1656
XceI RCATGY 2 cut(s) 1927, 1974
XcmI CCANNNNNNNNNTGG 1 cut(s) 1749
XhoI CTCGAG 1 cut(s) 486
XmiI GTMKAC 3 cut(s) 1636, 1800, 1883
XmnI GAANNNNTTC 2 cut(s) 341, 822
XspI CTAG 4 cut(s) 62, 596, 1508, 1667
ZraI GACGTC 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 1976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.