Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241865.1

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 745

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 416 bp

ctgttaaagaggcacaagagtagtagtggctcaaatgcgggggcggttgatggtgttatcaggagagctgcggatgcaatctgtaacatttctcatgagaatagcaacattaaaaaccttgtcaggattgaaggtggtatccctcctcttgtggagttgcttaacttctttgacacaaaggtacagagggcagctgcaggggccctgaagatcctagcattcaaaaatgacgaaaacaaaaatcagattgttgagtgcaacgctttgcctaacctggtacttatgctgcgatctgagattgcaactatgacttatgaagcagttggtgtaattggtaatcttgtccactcttctccaagcatcaagaaacttgttcttgttgctggtgctttacaacctgttattgatttactgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

138

Amino Acids

14.75

Weight (kDa)

9.04

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	38, 44, 71
AclWI	GGATC	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	183, 279
AgsI	TTSAA	2 cut(s)	131, 223
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	2 cut(s)	68, 194
AluI	AGCT	2 cut(s)	68, 194
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	201
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	68, 191, 194, 286
AspS9I	GGNCC	2 cut(s)	201, 202
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	55, 181, 203, 273
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	275
BciVI	GTATCC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	4 cut(s)	69, 192, 195, 287
BlsI	GCNGC	4 cut(s)	70, 193, 196, 288
Bme1390I	CCNGG	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	201, 202
BmiI	GGNNCC	2 cut(s)	202, 203
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	64, 369
BseBI	CCWGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	285, 404
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	55, 181, 203, 273
BshFI	GGCC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	210, 290
BspACI	CCGC	3 cut(s)	38, 44, 71
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	286, 405
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	202, 203
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	205
BssMI	GATC	2 cut(s)	210, 290
Bst2UI	CCWGG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	294, 413
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	213, 293
BstMBI	GATC	2 cut(s)	210, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 200
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	4 cut(s)	55, 181, 203, 273
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	201, 202
CsiI	ACCWGGT	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	182, 278
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	30, 68, 194, 203
CviKI_1	RGCY	4 cut(s)	30, 68, 194, 203
CviQI	GTAC	2 cut(s)	182, 278
DdeI	CTNAG	2 cut(s)	294, 413
DpnI	GATC	2 cut(s)	212, 292
DpnII	GATC	2 cut(s)	210, 290
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	227
EcoO109I	RGGNCCY	2 cut(s)	201, 202
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	1 cut(s)	98
FaiI	YATR	4 cut(s)	96, 284, 308, 315
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	69, 192, 195, 287
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	4 cut(s)	69, 192, 195, 287
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	4 cut(s)	69, 192, 195, 287
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	246, 295
Hpy188III	TCNNGA	4 cut(s)	61, 95, 124, 364
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	4 cut(s)	77, 197, 258, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 200
HpyF3I	CTNAG	2 cut(s)	294, 413
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	210, 290
LpnPI	CCDG	8 cut(s)	46, 109, 183, 218, 260, 287, 369, 411
Lsp1109I	GCAGC	4 cut(s)	55, 181, 203, 273
LweI	GCATC	2 cut(s)	64, 369
MabI	ACCWGGT	1 cut(s)	273
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	212, 292
MboI	GATC	2 cut(s)	210, 290
MboII	GAAGA	2 cut(s)	220, 342
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	330
MnlI	CCTC	4 cut(s)	3, 153, 156, 180
MseI	TTAA	3 cut(s)	5, 111, 162
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	74, 200
NdeII	GATC	2 cut(s)	210, 290
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	202, 203
PagI	TCATGA	1 cut(s)	94
PctI	GAATGC	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	70, 193, 196, 288
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	202, 203
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	201, 202
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	183, 279
RsaNI	GTAC	2 cut(s)	182, 278
SaqAI	TTAA	3 cut(s)	5, 111, 162
SatI	GCNGC	4 cut(s)	69, 192, 195, 287
Sau3AI	GATC	2 cut(s)	210, 290
Sau96I	GGNCC	2 cut(s)	201, 202
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	7 cut(s)	70, 120, 136, 183, 196, 276, 400
SexAI	ACCWGGT	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	64, 369
SfcI	CTRYAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	3 cut(s)	38, 44, 71
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	273
TasI	AATT	1 cut(s)	330
Tru1I	TTAA	3 cut(s)	5, 111, 162
Tru9I	TTAA	3 cut(s)	5, 111, 162
TseI	GCWGC	4 cut(s)	68, 191, 194, 286
TspDTI	ATGAA	1 cut(s)	330
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.