Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Forward (+)

35011806 .. 35012981

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1264700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGGAAAAAACAAGAGCACTGCTTAGCCTTTTGGAATACAAAGCTCACTACAGTACTAATTTGGGCCATTTTATTTTTATCAGGATATTTGAGTAGCGTATCCACCGTTTTCTTTTGGCGGTTTGTTGTTAATTTGGGTGCAGAGCAGCTTGTCGACATCTTGGTCGACTGTGGAGCTGTTCCGACTCTGGTTAAACATCTGCGGGCGCCGCCAGCGACGGACGGCGGAAAACATCCGATCCCTTACGAGCATGAGGTCGAGAAATACTGCGCTTATGCCCTGGGGCTTATTGCCATTAAGCTGGAGTGTCAACAACTCGTGGTTGATGCCGGAGCTTTACCGGCACCTGATGCTGTGATCAGGAGAGCTTGTGATACAATTGCCGTCATTGCCCGTGAAAATATTGTAGTAGAGTGCAGTGCTTTGCCTACCCTGGTACTAATGCTTCGATCTGAGGATCCTGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

158

Amino Acids

17.31

Weight (kDa)

6.06

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccB1I	GGYRCC	2 cut(s)	208, 346
AccI	GTMKAC	2 cut(s)	156, 168
AciI	CCGC	4 cut(s)	121, 205, 212, 228
AclWI	GGATC	3 cut(s)	235, 455, 468
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	2 cut(s)	57, 441
AjnI	CCWGG	2 cut(s)	282, 435
AluBI	AGCT	6 cut(s)	46, 151, 179, 304, 338, 371
AluI	AGCT	6 cut(s)	46, 151, 179, 304, 338, 371
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	235, 455, 468
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	211, 275
AspS9I	GGNCC	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	2 cut(s)	208, 346
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	2 cut(s)	241, 371
BciT130I	CCWGG	2 cut(s)	284, 437
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	149, 212
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	2 cut(s)	150, 213
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	284, 437
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	3 cut(s)	210, 348, 462
BmrFI	CCNGG	2 cut(s)	284, 437
BmsI	GCATC	2 cut(s)	319, 343
BpmI	CTGGAG	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	282, 283, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bse118I	RCCGGY	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	284, 437
BseDI	CCNNGG	3 cut(s)	282, 283, 435
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	2 cut(s)	162, 439
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	2 cut(s)	208, 346
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	333, 344
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	240, 360, 452, 460
Bsp1720I	GCTNAGC	1 cut(s)	25
BspACI	CCGC	4 cut(s)	121, 205, 212, 228
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	210, 348, 462
BspPI	GGATC	3 cut(s)	235, 455, 468
BspT107I	GGYRCC	2 cut(s)	208, 346
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	282, 283, 435
BssMI	GATC	4 cut(s)	240, 360, 452, 460
BssNI	GRCGYC	1 cut(s)	209
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	284, 437
Bst4CI	ACNGT	3 cut(s)	55, 109, 173
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	207, 216
BstDEI	CTNAG	2 cut(s)	25, 456
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	211, 275
BstKTI	GATC	4 cut(s)	243, 363, 455, 463
BstMBI	GATC	4 cut(s)	240, 360, 452, 460
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 215, 344, 353, 392
BstNI	CCWGG	2 cut(s)	284, 437
BstSCI	CCNGG	2 cut(s)	282, 435
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	2 cut(s)	19, 427
BtsIMutI	CAGTG	2 cut(s)	19, 427
Cac8I	GCNNGC	2 cut(s)	207, 216
CfoI	GCGC	2 cut(s)	211, 275
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	56, 440
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	9 cut(s)	29, 46, 68, 151, 179, 289, 304, 338, 371
CviKI_1	RGCY	9 cut(s)	29, 46, 68, 151, 179, 289, 304, 338, 371
CviQI	GTAC	2 cut(s)	56, 440
DdeI	CTNAG	2 cut(s)	25, 456
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	4 cut(s)	242, 362, 454, 462
DpnII	GATC	4 cut(s)	240, 360, 452, 460
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	282, 435
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
FaeI	CATG	1 cut(s)	257
FaiI	YATR	2 cut(s)	255, 279
FatI	CATG	1 cut(s)	253
FauI	CCCGC	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	156, 168
Fnu4HI	GCNGC	2 cut(s)	149, 212
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	149, 212
GlaI	GCGC	2 cut(s)	210, 274
GluI	GCNGC	2 cut(s)	149, 212
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	333, 344
HhaI	GCGC	2 cut(s)	211, 275
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	2 cut(s)	209, 273
HinP1I	GCGC	2 cut(s)	209, 273
HincII	GTYRAC	3 cut(s)	157, 169, 314
HindII	GTYRAC	3 cut(s)	157, 169, 314
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	333, 344
Hpy166II	GTNNAC	3 cut(s)	157, 169, 314
Hpy188I	TCNGA	3 cut(s)	186, 240, 457
Hpy188III	TCNNGA	3 cut(s)	84, 262, 364
Hpy8I	GTNNAC	3 cut(s)	157, 169, 314
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	55, 109, 173
HpyCH4V	TGCA	2 cut(s)	143, 420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 215, 344, 353, 392
HpyF3I	CTNAG	2 cut(s)	25, 456
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	2 cut(s)	209, 273
KasI	GGCGCC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	240, 360, 452, 460
LmnI	GCTCC	2 cut(s)	176, 335
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	319, 343
MalI	GATC	4 cut(s)	242, 362, 454, 462
MboI	GATC	4 cut(s)	240, 360, 452, 460
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	60, 133, 381
Mly113I	GGCGCC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	250, 451
MseI	TTAA	3 cut(s)	132, 195, 300
MspI	CCGG	2 cut(s)	333, 344
MspR9I	CCNGG	2 cut(s)	284, 437
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	2 cut(s)	284, 437
MwoI	GCNNNNNNNGC	5 cut(s)	211, 215, 344, 353, 392
NarI	GGCGCC	1 cut(s)	209
NdeII	GATC	4 cut(s)	240, 360, 452, 460
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	3 cut(s)	210, 348, 462
PasI	CCCWGGG	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	150, 213
PleI	GAGTC	1 cut(s)	181
PluTI	GGCGCC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	282, 435
PspGI	CCWGG	2 cut(s)	282, 435
PspN4I	GGNNCC	3 cut(s)	210, 348, 462
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	57, 441
RsaNI	GTAC	2 cut(s)	56, 440
SalI	GTCGAC	2 cut(s)	155, 167
SaqAI	TTAA	3 cut(s)	132, 195, 300
SatI	GCNGC	2 cut(s)	149, 212
Sau3AI	GATC	4 cut(s)	240, 360, 452, 460
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	284, 437
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	48, 153, 181, 261, 306, 340, 352, 373
SfaNI	GCATC	2 cut(s)	319, 343
SfcI	CTRYAG	1 cut(s)	51
SfoI	GGCGCC	1 cut(s)	210
Sse9I	AATT	3 cut(s)	60, 133, 381
SsiI	CCGC	4 cut(s)	121, 205, 212, 228
SspDI	GGCGCC	1 cut(s)	208
SspI	AATATT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	282, 435
TaaI	ACNGT	3 cut(s)	55, 109, 173
TaqI	TCGA	4 cut(s)	156, 168, 261, 451
TasI	AATT	3 cut(s)	60, 133, 381
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	3 cut(s)	132, 195, 300
Tru9I	TTAA	3 cut(s)	132, 195, 300
TscAI	CASTG	2 cut(s)	26, 427
TseI	GCWGC	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	2 cut(s)	26, 427
XmiI	GTMKAC	2 cut(s)	156, 168
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.