Rorug04G0145300

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000306
Physical Location & Seq
Forward (+)
24102287 .. 24102670
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0145300.1

Sequence Viewer

Length: 384 bp
ATGATGTTAGGGGGAGGTGCTTGGCCCTTGAGTGGCTTGACGTCTCCGGAGCATGCTGAAATCTTGGCCTGTAAAGCTGCGCTAGAGTTTGTGGGGGAGCACGATTTTGGTCCAGTTATACTGGAAACCGATGCTATGGAGGTTCGACGTCAACTTTCATTGCATGATACTGCTAATCTGTCTTTACTGGGCAGAATATATGATGATGTAGTGGCTTTATTGGACGCCCAACATGTTGTGCAGGTGCTACACGTAGGTCGTCAAGGTAATGGGGTAGCACATTTGTTGGCTAACCATGGCCACTCTCTTAGGCAGAATGCTTTTTATTTTTCAGTTCCAGTTTTCTTACAAGCTGCGATTGCAGCTGAGCTTTGTAATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

127

Amino Acids

13.68

Weight (kDa)

5.46

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 99 4.1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
AatII GACGTC 2 cut(s) 44, 151
Acc36I ACCTGC 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 298
AcyI GRCGYC 3 cut(s) 41, 148, 225
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 2 cut(s) 232, 250
AluBI AGCT 4 cut(s) 77, 353, 365, 370
AluI AGCT 4 cut(s) 77, 353, 365, 370
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 23, 66, 298
ApeKI GCWGC 3 cut(s) 77, 353, 362
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 24, 110
AvaII GGWCC 1 cut(s) 110
BalI TGGCCA 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 64, 340, 374
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 3 cut(s) 78, 354, 363
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 3 cut(s) 79, 355, 364
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 24, 110
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 3 cut(s) 41, 148, 225
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 4 cut(s) 113, 126, 192, 338
Bse3DI GCAATG 1 cut(s) 158
BseAI TCCGGA 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 4 cut(s) 113, 126, 192, 338
BseXI GCAGC 3 cut(s) 64, 340, 374
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 3 cut(s) 25, 68, 300
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 3 cut(s) 25, 68, 300
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 46
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 295
BspANI GGCC 3 cut(s) 25, 68, 300
BspCNI CTCAG 1 cut(s) 358
BspEI TCCGGA 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 4 cut(s) 113, 126, 192, 338
BssECI CCNNGG 1 cut(s) 295
BssNI GRCGYC 3 cut(s) 41, 148, 225
BssT1I CCWWGG 1 cut(s) 295
BstACI GRCGYC 3 cut(s) 41, 148, 225
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 308, 366
BstDSI CCRYGG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 74, 359, 362
BstNSI RCATGY 2 cut(s) 56, 236
BstV1I GCAGC 3 cut(s) 64, 340, 374
BsuRI GGCC 3 cut(s) 25, 68, 300
BtgI CCRYGG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 24, 110
CseI GACGC 1 cut(s) 233
CviAII CATG 4 cut(s) 53, 164, 233, 296
DdeI CTNAG 2 cut(s) 308, 366
EaeI YGGCCR 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 4 cut(s) 56, 167, 236, 299
FaiI YATR 8 cut(s) 54, 119, 137, 165, 199, 201, 234, 297
FatI CATG 4 cut(s) 52, 163, 232, 295
Fnu4HI GCNGC 3 cut(s) 78, 354, 363
Fsp4HI GCNGC 3 cut(s) 78, 354, 363
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 78, 354, 363
HaeIII GGCC 3 cut(s) 25, 68, 300
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 3 cut(s) 41, 148, 225
Hin1II CATG 4 cut(s) 56, 167, 236, 299
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 150
HpyCH4IV ACGT 3 cut(s) 41, 148, 252
HpyCH4V TGCA 3 cut(s) 163, 241, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 359, 362
HpyF3I CTNAG 2 cut(s) 308, 366
HpySE526I ACGT 3 cut(s) 41, 148, 252
Hsp92I GRCGYC 3 cut(s) 41, 148, 225
Hsp92II CATG 4 cut(s) 56, 167, 236, 299
HspAI GCGC 1 cut(s) 80
Kpn2I TCCGGA 1 cut(s) 46
LmnI GCTCC 2 cut(s) 49, 97
LpnPI CCDG 7 cut(s) 60, 82, 107, 126, 173, 227, 351
Lsp1109I GCAGC 3 cut(s) 64, 340, 374
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 83
MaeII ACGT 3 cut(s) 41, 148, 252
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 300
MluNI TGGCCA 1 cut(s) 300
MnlI CCTC 2 cut(s) 8, 133
Mox20I TGGCCA 1 cut(s) 300
MroI TCCGGA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 74, 359, 362
NcoI CCATGG 1 cut(s) 295
NlaIII CATG 4 cut(s) 56, 167, 236, 299
NspI RCATGY 2 cut(s) 56, 236
PaeI GCATGC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 232
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 322
PkrI GCNGC 3 cut(s) 79, 355, 364
Ppu21I YACGTR 1 cut(s) 253
PscI ACATGT 1 cut(s) 232
PspPI GGNCC 2 cut(s) 24, 110
PvuII CAGCTG 1 cut(s) 365
SatI GCNGC 3 cut(s) 78, 354, 363
Sau96I GGNCC 2 cut(s) 24, 110
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SphI GCATGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 295
TaiI ACGT 3 cut(s) 44, 151, 255
TaqI TCGA 1 cut(s) 145
TseI GCWGC 3 cut(s) 77, 353, 362
TspDTI ATGAA 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 110
XceI RCATGY 2 cut(s) 56, 236
XspI CTAG 1 cut(s) 83
ZraI GACGTC 2 cut(s) 42, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.