Rroxscaffold_5G00360820

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000306
Physical Location & Seq
Forward (+)
41427998 .. 41428981
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360820.1

Sequence Viewer

Length: 984 bp
ATGGCTTCCACCCCCAAAGAAATAGCCTCCGAGTTCCTTCCTTTCATCAGAGTCTACAAAGATGGCACAGTCGAACGCCTCATGGGCTCTCCTTATGTGCCTCCATCTGCTCGTGACCCCGAAACTGGTGTTTCCTCCAAAGACATTATCATCTCAGACAACCCCAAAATCTCTGCTCGCCTTTTTCTCCCTCAAACCCTAGACCAAAATGTCCAAAACCAAAAGCTTCCGGTTTTGGTCTACTTTCACGGCGGTGGCTTTTGCTTTGAATCTGCCTTCTCGTCTGATCACCACCGCTTCCTCAACCGCCTGGTCTCGAAAGCCCAAGTCCTTGCTGTTTCAGTCGAGTACAGACTCGCCCCGGAAGTGCCAATTCCCATTTGTTACCAAGACTGCTGGGATGCTCTTCAATGGGTTGCTTCGCATACCGAAAATGAAGATGTGGGTGCTGCTAACAAAGAGCCATGGTTACTCAACCACGGTGATTTCGGTAAAGTTTACATTGGTGGTGACAGTGCAGGTGGTAACATTGTACATAACATAGCAATGAAGGCAGGGACTGAGAGCTCGAGTGTGAAACTAGTTGGGGCATTTATGTCCCACACTTATTTTTTGAGTTCCAAGCCACTGGGATCGGAGCCGAAAGGTGAGGAGTTCAAGAACTATGTGCCTTGCATGGTTTGGGGCTTTCTGAATCCGTCGACTCCGGGAGGGATTGACAGTCCGATGGTGAACCCGGCGGGTCCGGGCGCTCCAAGTCTGGTTGGGCTTGGGTGTTCTAAGCTGCTTGTGTGTGTTTCTAGCAAGGATGAGCTGAGGGGTCGAGGTGTTTGGTATTATGATTTGGTGAAGGGAAGTGGATTTAAAGGAGAAGTTGAGTTGTTTGAAGTGGAAGGAGAGGAACACGCTTTTCATATATTGAGCGAGGCCGAGACTCAGAATGTTAAGAAAATGATCAACAGATTAGCTTCTTTTCTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

327

Amino Acids

35.73

Weight (kDa)

5.63

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 64 - 121 1.2e-07 Carboxylesterase family
BD-FAE PF20434 71 - 185 1e-09 BD-FAE
Abhydrolase_3 PF07859 79 - 305 2.2e-41 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
AasI GACNNNNNNGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 509
AccI GTMKAC 3 cut(s) 54, 240, 701
AciI CCGC 4 cut(s) 252, 295, 307, 740
AclWI GGATC 1 cut(s) 640
AfaI GTAC 2 cut(s) 350, 534
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 269, 410, 658, 887
AhlI ACTAGT 1 cut(s) 580
AjnI CCWGG 1 cut(s) 309
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 5 cut(s) 226, 567, 784, 814, 968
AluI AGCT 5 cut(s) 226, 567, 784, 814, 968
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 2 cut(s) 319, 926
AlwI GGATC 1 cut(s) 640
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 1 cut(s) 927
ApeKI GCWGC 2 cut(s) 449, 784
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 4 cut(s) 362, 708, 737, 747
AsuHPI GGTGA 6 cut(s) 281, 494, 521, 659, 742, 859
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 89, 569
BauI CACGAG 2 cut(s) 111, 977
Bbv12I GWGCWC 1 cut(s) 569
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 2 cut(s) 436, 771
BccI CCATC 3 cut(s) 56, 112, 721
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 311
BclI TGATCA 2 cut(s) 286, 954
BcnI CCSGG 4 cut(s) 362, 708, 737, 747
BcoDI GTCTC 2 cut(s) 319, 926
BcuI ACTAGT 1 cut(s) 580
BfaI CTAG 3 cut(s) 200, 581, 801
BfoI RGCGCY 1 cut(s) 753
BfuAI ACCTGC 1 cut(s) 509
BglI GCCNNNNNGGC 1 cut(s) 84
BisI GCNGC 2 cut(s) 450, 785
BlsI GCNGC 2 cut(s) 451, 786
Bme1390I CCNGG 5 cut(s) 311, 362, 708, 737, 747
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 639, 744
BmrFI CCNGG 5 cut(s) 311, 362, 708, 737, 747
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 638
Bpu10I CCTNAGC 1 cut(s) 815
BpuMI CCSGG 4 cut(s) 362, 708, 737, 747
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 360, 464, 478
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 130, 633
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 360, 464, 478
BseGI GGATG 2 cut(s) 406, 814
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 4 cut(s) 168, 552, 806, 950
BseNI ACTGG 2 cut(s) 130, 633
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 2 cut(s) 436, 771
BseYI CCCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 1 cut(s) 929
BsiHKAI GWGCWC 1 cut(s) 569
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 5 cut(s) 230, 362, 707, 737, 746
BslFI GGGAC 2 cut(s) 571, 583
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 319, 926
BsmFI GGGAC 2 cut(s) 571, 583
BsnI GGCC 1 cut(s) 929
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 568
Bsp1286I GDGCHC 2 cut(s) 89, 569
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 3 cut(s) 286, 632, 954
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 4 cut(s) 252, 295, 307, 740
BspANI GGCC 1 cut(s) 929
BspCNI CTCAG 4 cut(s) 167, 553, 807, 949
BspLI GGNNCC 2 cut(s) 639, 744
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 640
BspQI GCTCTTC 1 cut(s) 411
BspTNI GGTCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 2 cut(s) 130, 633
BssECI CCNNGG 3 cut(s) 360, 464, 478
BssMI GATC 3 cut(s) 286, 632, 954
BssSI CACGAG 2 cut(s) 111, 977
BssT1I CCWWGG 1 cut(s) 464
Bst2BI CACGAG 2 cut(s) 111, 977
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 4 cut(s) 70, 482, 515, 722
Bst6I CTCTTC 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 5 cut(s) 154, 561, 780, 815, 936
BstDSI CCRYGG 2 cut(s) 464, 478
BstF5I GGATG 2 cut(s) 406, 814
BstH2I RGCGCY 1 cut(s) 753
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 3 cut(s) 289, 635, 957
BstMAI GTCTC 2 cut(s) 319, 926
BstMBI GATC 3 cut(s) 286, 632, 954
BstMWI GCNNNNNNNGC 2 cut(s) 84, 551
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 5 cut(s) 309, 360, 706, 735, 745
BstV1I GCAGC 2 cut(s) 436, 771
BstXI CCANNNNNNTGG 1 cut(s) 628
BsuRI GGCC 1 cut(s) 929
BtgI CCRYGG 2 cut(s) 464, 478
BtsCI GGATG 2 cut(s) 406, 814
BtsIMutI CAGTG 2 cut(s) 520, 626
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 752
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 349, 533
CviAII CATG 3 cut(s) 82, 465, 676
CviQI GTAC 2 cut(s) 349, 533
DdeI CTNAG 5 cut(s) 154, 561, 780, 815, 936
DpnI GATC 3 cut(s) 288, 634, 956
DpnII GATC 3 cut(s) 286, 632, 954
DraI TTTAAA 1 cut(s) 865
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 464
Eco24I GRGCYC 2 cut(s) 89, 569
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 464
EcoT38I GRGCYC 2 cut(s) 89, 569
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 3 cut(s) 85, 468, 679
FaqI GGGAC 2 cut(s) 571, 583
FatI CATG 3 cut(s) 81, 464, 675
FauI CCCGC 1 cut(s) 733
FbaI TGATCA 2 cut(s) 286, 954
FblI GTMKAC 3 cut(s) 54, 240, 701
Fnu4HI GCNGC 2 cut(s) 450, 785
FokI GGATG 2 cut(s) 413, 821
FriOI GRGCYC 2 cut(s) 89, 569
Fsp4HI GCNGC 2 cut(s) 450, 785
FspBI CTAG 3 cut(s) 200, 581, 801
GlaI GCGC 1 cut(s) 751
GluI GCNGC 2 cut(s) 450, 785
GsaI CCCAGC 1 cut(s) 400
HaeII RGCGCY 1 cut(s) 753
HaeIII GGCC 1 cut(s) 929
HapII CCGG 5 cut(s) 230, 362, 707, 737, 746
HhaI GCGC 1 cut(s) 752
Hin1II CATG 3 cut(s) 85, 468, 679
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 6 cut(s) 51, 269, 354, 694, 703, 934
HpaII CCGG 5 cut(s) 230, 362, 707, 737, 746
HphI GGTGA 6 cut(s) 281, 494, 521, 659, 742, 859
Hpy166II GTNNAC 5 cut(s) 55, 241, 499, 702, 733
Hpy188I TCNGA 8 cut(s) 31, 50, 157, 286, 637, 693, 726, 939
Hpy188III TCNNGA 3 cut(s) 113, 316, 658
Hpy8I GTNNAC 5 cut(s) 55, 241, 499, 702, 733
Hpy99I CGWCG 1 cut(s) 703
HpyAV CCTTC 5 cut(s) 47, 286, 544, 844, 887
HpyCH4III ACNGT 4 cut(s) 70, 482, 515, 722
HpyCH4V TGCA 2 cut(s) 518, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 551
HpyF3I CTNAG 5 cut(s) 154, 561, 780, 815, 936
Hsp92II CATG 3 cut(s) 85, 468, 679
HspAI GCGC 1 cut(s) 750
Ksp22I TGATCA 2 cut(s) 286, 954
Kzo9I GATC 3 cut(s) 286, 632, 954
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 637, 757
Lsp1109I GCAGC 2 cut(s) 436, 771
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 200, 581, 801
MaeIII GTNAC 5 cut(s) 113, 383, 468, 509, 524
MalI GATC 3 cut(s) 288, 634, 956
MboI GATC 3 cut(s) 286, 632, 954
MboII GAAGA 2 cut(s) 398, 449
MhlI GDGCHC 2 cut(s) 89, 569
MluCI AATT 1 cut(s) 372
MlyI GAGTC 4 cut(s) 60, 348, 697, 928
MseI TTAA 2 cut(s) 864, 945
MslI CAYNNNNRTG 2 cut(s) 252, 545
MspI CCGG 5 cut(s) 230, 362, 707, 737, 746
MspR9I CCNGG 5 cut(s) 311, 362, 708, 737, 747
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 84, 551
NciI CCSGG 4 cut(s) 362, 708, 737, 747
NcoI CCATGG 1 cut(s) 464
NdeII GATC 3 cut(s) 286, 632, 954
NlaIII CATG 3 cut(s) 85, 468, 679
NlaIV GGNNCC 2 cut(s) 639, 744
NmeAIII GCCGAG 1 cut(s) 955
NmuCI GTSAC 2 cut(s) 113, 509
OliI CACNNNNGTG 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 568
PaqCI CACCTGC 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 269, 694
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 2 cut(s) 451, 786
PleI GAGTC 4 cut(s) 59, 348, 697, 928
PpsI GAGTC 4 cut(s) 59, 348, 697, 928
Psp124BI GAGCTC 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 639, 744
PspPI GGNCC 1 cut(s) 743
PspXI VCTCGAGB 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 560
RsaI GTAC 2 cut(s) 350, 534
RsaNI GTAC 2 cut(s) 349, 533
RseI CAYNNNNRTG 2 cut(s) 252, 545
SacI GAGCTC 1 cut(s) 569
SalI GTCGAC 1 cut(s) 700
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 864, 945
SatI GCNGC 2 cut(s) 450, 785
Sau3AI GATC 3 cut(s) 286, 632, 954
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 4 cut(s) 60, 348, 697, 928
ScrFI CCNGG 5 cut(s) 311, 362, 708, 737, 747
SduI GDGCHC 2 cut(s) 89, 569
SetI ASST 8 cut(s) 228, 523, 569, 649, 786, 816, 829, 970
SfaNI GCATC 1 cut(s) 391
Sfr274I CTCGAG 1 cut(s) 568
SinI GGWCC 1 cut(s) 743
SlaI CTCGAG 1 cut(s) 568
SmiMI CAYNNNNRTG 2 cut(s) 252, 545
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
SpeI ACTAGT 1 cut(s) 580
Sse9I AATT 1 cut(s) 372
SsiI CCGC 4 cut(s) 252, 295, 307, 740
SspMI CTAG 3 cut(s) 200, 581, 801
SstI GAGCTC 1 cut(s) 569
StyD4I CCNGG 5 cut(s) 309, 360, 706, 735, 745
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 4 cut(s) 70, 482, 515, 722
TaqI TCGA 6 cut(s) 72, 317, 345, 569, 701, 823
TasI AATT 1 cut(s) 372
TatI WGTACW 2 cut(s) 348, 532
TfiI GAWTC 2 cut(s) 269, 694
Tru1I TTAA 2 cut(s) 864, 945
Tru9I TTAA 2 cut(s) 864, 945
TscAI CASTG 2 cut(s) 520, 633
TseFI GTSAC 2 cut(s) 113, 509
TseI GCWGC 2 cut(s) 449, 784
Tsp45I GTSAC 2 cut(s) 113, 509
TspDTI ATGAA 4 cut(s) 34, 450, 563, 902
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 2 cut(s) 520, 633
VpaK11BI GGWCC 1 cut(s) 743
XhoI CTCGAG 1 cut(s) 568
XmiI GTMKAC 3 cut(s) 54, 240, 701
XspI CTAG 3 cut(s) 200, 581, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.