Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Forward (+)

24097014 .. 24097625

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCGGGGATTCCGGGAGGCGCTAGGGTACTGTGAATTACTGGATCTTGGGTTTCAAGGATCAATGGCGACGTGGTGGAATTCGGATACTTTGTTGCGTCTAGACCGAGCTGTTTGCACCCCTTCATGGGTCGACATTTTTCATTATGCTAGAGTTATGCATCTGGCTCCGTCTGATTCTGACCACGTCCCGGTATTGCTACGCGCGAGTACAGCTCCGATGGCCGCAAGAACTAGGTCTCACCGCTTCAAGTTTGAAGCGTTTTGGATGCAGCATCCTGACTGCGATGGGATTGTGAAGGAAGCCTGGGGTACCGATGTTGTGGGTACTCCTATGTTTTGTGTTACAAAGAAAATTATGCATACTAGAATTCATCTGACTAAATGGCAAAAGGAGGTCTTCAAGGGTAGGCAACTACATATGTTGGGCATCCGAGCTAGGAGGAATTGTTTTGGAAGCAGCGCTCGAAAATTACATGGCTCAAGGAAGGGGATCGAAACACCAGTTTTTTTCACCGGAAAACAAAGAATCGGAAGCACAAGAACTCTTTGCAAGGGTTGTTTGATGAAGCGGGGCAATGGCAGGAGGATGATGACGGGATTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010187 GO:0016020 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

203

Amino Acids

23.26

Weight (kDa)

10.4

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	204, 206
AciI	CCGC	4 cut(s)	4, 225, 244, 571
AclWI	GGATC	3 cut(s)	51, 67, 500
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	79, 369
AfaI	GTAC	4 cut(s)	29, 211, 313, 328
AfeI	AGCGCT	1 cut(s)	463
AfiI	CCNNNNNNNGG	3 cut(s)	126, 127, 190
AgsI	TTSAA	5 cut(s)	56, 250, 257, 403, 604
AjiI	CACGTC	2 cut(s)	72, 187
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	3 cut(s)	110, 215, 437
AluI	AGCT	3 cut(s)	110, 215, 437
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	51, 67, 500
Aor51HI	AGCGCT	1 cut(s)	463
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	271, 459
ApoI	RAATTY	2 cut(s)	79, 369
Asp718I	GGTACC	1 cut(s)	311
AspLEI	GCGC	3 cut(s)	22, 206, 464
AsuC2I	CCSGG	2 cut(s)	14, 191
AsuHPI	GGTGA	2 cut(s)	233, 505
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	283, 471
BccI	CCATC	2 cut(s)	214, 281
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	14, 191
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	6 cut(s)	23, 101, 150, 234, 366, 438
BfoI	RGCGCY	2 cut(s)	23, 465
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	225, 272, 460
BlsI	GCNGC	3 cut(s)	226, 273, 461
Bme1390I	CCNGG	3 cut(s)	14, 191, 307
BmgBI	CACGTC	2 cut(s)	72, 187
BmiI	GGNNCC	2 cut(s)	168, 313
BmrFI	CCNGG	3 cut(s)	14, 191, 307
BmsI	GCATC	4 cut(s)	169, 258, 283, 438
BpiI	GAAGAC	1 cut(s)	391
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	14, 191
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 127, 190
Bse1I	ACTGG	2 cut(s)	45, 503
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	4 cut(s)	273, 274, 429, 594
BseLI	CCNNNNNNNGG	3 cut(s)	126, 127, 190
BseMI	GCAATG	1 cut(s)	583
BseNI	ACTGG	2 cut(s)	45, 503
BseXI	GCAGC	2 cut(s)	283, 471
Bsh1236I	CGCG	2 cut(s)	204, 206
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	3 cut(s)	13, 191, 516
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	126, 127, 190
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	43, 59, 492
BspACI	CCGC	4 cut(s)	4, 225, 244, 571
BspANI	GGCC	1 cut(s)	224
BspFNI	CGCG	2 cut(s)	204, 206
BspLI	GGNNCC	2 cut(s)	168, 313
BspPI	GGATC	3 cut(s)	51, 67, 500
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	45, 503
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	3 cut(s)	43, 59, 492
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	32
BstF5I	GGATG	4 cut(s)	273, 274, 429, 594
BstFNI	CGCG	2 cut(s)	204, 206
BstH2I	RGCGCY	2 cut(s)	23, 465
BstHHI	GCGC	3 cut(s)	22, 206, 464
BstKTI	GATC	3 cut(s)	46, 62, 495
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	3 cut(s)	43, 59, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 221
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	3 cut(s)	12, 189, 305
BstUI	CGCG	2 cut(s)	204, 206
BstV1I	GCAGC	2 cut(s)	283, 471
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	2 cut(s)	72, 187
BtsCI	GGATG	4 cut(s)	273, 274, 429, 594
CfoI	GCGC	3 cut(s)	22, 206, 464
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	4 cut(s)	28, 210, 312, 327
CviAII	CATG	2 cut(s)	126, 476
CviJI	RGCY	7 cut(s)	110, 167, 215, 224, 305, 437, 480
CviKI_1	RGCY	7 cut(s)	110, 167, 215, 224, 305, 437, 480
CviQI	GTAC	4 cut(s)	28, 210, 312, 327
DpnI	GATC	3 cut(s)	45, 61, 494
DpnII	GATC	3 cut(s)	43, 59, 492
EaeI	YGGCCR	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	463
EcoRI	GAATTC	2 cut(s)	79, 369
EcoRII	CCWGG	1 cut(s)	305
EcoT22I	ATGCAT	2 cut(s)	162, 363
FaeI	CATG	2 cut(s)	129, 479
FaiI	YATR	9 cut(s)	127, 147, 158, 335, 359, 363, 420, 422, 477
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	125, 475
FauI	CCCGC	1 cut(s)	564
FauNDI	CATATG	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	225, 272, 460
FokI	GGATG	4 cut(s)	261, 280, 416, 601
Fsp4HI	GCNGC	3 cut(s)	225, 272, 460
FspBI	CTAG	6 cut(s)	23, 101, 150, 234, 366, 438
GlaI	GCGC	3 cut(s)	21, 205, 463
GluI	GCNGC	3 cut(s)	225, 272, 460
HaeII	RGCGCY	2 cut(s)	23, 465
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	3 cut(s)	13, 191, 516
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	3 cut(s)	22, 206, 464
Hin1II	CATG	2 cut(s)	129, 479
Hin6I	GCGC	3 cut(s)	20, 204, 462
HinP1I	GCGC	3 cut(s)	20, 204, 462
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	9, 176, 528
HpaII	CCGG	3 cut(s)	13, 191, 516
HphI	GGTGA	2 cut(s)	233, 505
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	7 cut(s)	85, 175, 181, 219, 378, 434, 533
Hpy188III	TCNNGA	2 cut(s)	101, 278
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	132, 292, 481
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	71, 186
HpyCH4V	TGCA	5 cut(s)	117, 160, 271, 361, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 221
HpySE526I	ACGT	2 cut(s)	71, 186
Hsp92II	CATG	2 cut(s)	129, 479
HspAI	GCGC	3 cut(s)	20, 204, 462
KpnI	GGTACC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	43, 59, 492
LmnI	GCTCC	2 cut(s)	172, 220
Lsp1109I	GCAGC	2 cut(s)	283, 471
LweI	GCATC	4 cut(s)	169, 258, 283, 438
MaeI	CTAG	6 cut(s)	23, 101, 150, 234, 366, 438
MaeII	ACGT	2 cut(s)	71, 186
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	45, 61, 494
MboI	GATC	3 cut(s)	43, 59, 492
MboII	GAAGA	1 cut(s)	391
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	6 cut(s)	35, 79, 354, 369, 445, 470
MnlI	CCTC	4 cut(s)	10, 388, 435, 579
Mph1103I	ATGCAT	2 cut(s)	162, 363
MspI	CCGG	3 cut(s)	13, 191, 516
MspR9I	CCNGG	3 cut(s)	14, 191, 307
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	2 cut(s)	204, 206
MwoI	GCNNNNNNNGC	2 cut(s)	212, 221
NciI	CCSGG	2 cut(s)	14, 191
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	3 cut(s)	43, 59, 492
NlaIII	CATG	2 cut(s)	129, 479
NlaIV	GGNNCC	2 cut(s)	168, 313
NsiI	ATGCAT	2 cut(s)	162, 363
PfeI	GAWTC	3 cut(s)	9, 176, 528
PflFI	GACNNNGTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	226, 273, 461
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	168, 313
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	4 cut(s)	29, 211, 313, 328
RsaNI	GTAC	4 cut(s)	28, 210, 312, 327
SalI	GTCGAC	1 cut(s)	131
SatI	GCNGC	3 cut(s)	225, 272, 460
Sau3AI	GATC	3 cut(s)	43, 59, 492
ScrFI	CCNGG	3 cut(s)	14, 191, 307
SetI	ASST	7 cut(s)	74, 112, 189, 217, 239, 399, 439
SfaNI	GCATC	4 cut(s)	169, 258, 283, 438
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	6 cut(s)	35, 79, 354, 369, 445, 470
SsiI	CCGC	4 cut(s)	4, 225, 244, 571
SspMI	CTAG	6 cut(s)	23, 101, 150, 234, 366, 438
StyD4I	CCNGG	3 cut(s)	12, 189, 305
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	2 cut(s)	74, 189
TaqI	TCGA	3 cut(s)	132, 466, 495
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	6 cut(s)	35, 79, 354, 369, 445, 470
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	9, 176, 528
TseI	GCWGC	2 cut(s)	271, 459
TspDTI	ATGAA	4 cut(s)	114, 131, 362, 581
TspGWI	ACGGA	1 cut(s)	159
Tth111I	GACNNNGTC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	79, 369
XbaI	TCTAGA	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	6 cut(s)	23, 101, 150, 234, 366, 438
Zsp2I	ATGCAT	2 cut(s)	162, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.