pycom11g25240

Arm repeat protein interacting with

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
28069227 .. 28070921
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25240.1

Sequence Viewer

Length: 741 bp
ATGAGGTCCCATCAACCACACTTTTATTCCCATACTACCCCCGACCCCTCTCTGAATTTACCATTTCTCCCACCCTCCATGGAACGCTCTCAGGCGCGAACCGTCACAACCAGAAGAGGGTTGAAGCGGAAGCTCGAAGAAGACTTCAGAGATGAGAGGATCGAGGGCGAACCGGACCGGAAAGTCCCGGCCGTCGTTGAACCGCAAGACGATCGCCCAGATCTCGTCGGCCGGGTTCGCGAGCAGGTCCGGACTCTGGAGTCCATATTCTCGTCCGCGCAGCCCGACCGCCTCCTCGCGAAGCAGGCCGCCCATGGCCTCGCTCTCACCGCCAAAGAAGAGGAGCTTGTGGACATCGTGGTGGACGGTGGAGCAGTTCCGGCGCTTGTTAAGCATCTGCAGGCGCCTCCGCCGGTGACAGACGGCCGAAGAAGCCCGATCCCGTACGAGCACGAGGTCGAGAAATACTGTGCTTATGCCCTGGGGTTTATTGCCATTAAGCCGGAGTATCAACAACTTGTGGTTGATGCTGGAGCTTTACCGCATCTTGTTGATCTTCTAAAAAGGCACAAGTGGGGAAGTGACTCACCGGCACCTGATGCTGTTCGATCAGGAGAGCTTGTGATACAATTGCTCACCTTGCCCATGAAAATGGCAACATTAAGAACCTTGTCAGGATTGAAGGTGGAATTCCTCCTCTTGTTCAACTGCTTAACTTCTTCGACACAAAGGTACAGATAG

Protein Analysis

247

Amino Acids

27.62

Weight (kDa)

7.11

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 259
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 2 cut(s) 403, 592
AccII CGCG 4 cut(s) 97, 240, 278, 299
AccIII TCCGGA 1 cut(s) 249
AciI CCGC 8 cut(s) 127, 203, 276, 289, 309, 330, 410, 542
AclWI GGATC 2 cut(s) 167, 433
AcoI YGGCCR 3 cut(s) 189, 229, 424
AcsI RAATTY 2 cut(s) 55, 689
AcuI CTGAAG 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 2 cut(s) 446, 734
AfiI CCNNNNNNNGG 2 cut(s) 117, 256
AgsI TTSAA 4 cut(s) 124, 200, 682, 706
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 4 cut(s) 133, 346, 536, 619
AluI AGCT 4 cut(s) 133, 346, 536, 619
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 2 cut(s) 167, 433
Aor13HI TCCGGA 1 cut(s) 249
AoxI GGCC 5 cut(s) 189, 229, 306, 316, 424
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 2 cut(s) 55, 689
AspLEI GCGC 4 cut(s) 97, 280, 385, 406
AspS9I GGNCC 3 cut(s) 6, 175, 247
AsuC2I CCSGG 2 cut(s) 188, 233
AsuHPI GGTGA 4 cut(s) 319, 427, 579, 628
AvaII GGWCC 3 cut(s) 6, 175, 247
BanI GGYRCC 2 cut(s) 403, 592
BauI CACGAG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 18
BceAI ACGGC 2 cut(s) 176, 439
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 482
BcnI CCSGG 2 cut(s) 188, 233
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 2 cut(s) 386, 407
BfuAI ACCTGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 281, 309
BlsI GCNGC 2 cut(s) 282, 310
Bme1390I CCNGG 3 cut(s) 188, 233, 482
Bme18I GGWCC 3 cut(s) 6, 175, 247
BmgT120I GGNCC 3 cut(s) 6, 175, 247
BmiI GGNNCC 3 cut(s) 8, 405, 594
BmrFI CCNGG 3 cut(s) 188, 233, 482
BmsI GCATC 4 cut(s) 403, 517, 553, 589
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 278, 552
BpuMI CCSGG 2 cut(s) 188, 233
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 78, 313, 480, 481
BsaWI WCCGGW 3 cut(s) 172, 177, 249
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 256
Bse118I RCCGGY 2 cut(s) 412, 589
BseAI TCCGGA 1 cut(s) 249
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 4 cut(s) 78, 313, 480, 481
BseLI CCNNNNNNNGG 2 cut(s) 117, 256
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 3 cut(s) 284, 356, 686
BseX3I CGGCCG 3 cut(s) 189, 229, 424
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 4 cut(s) 97, 240, 278, 299
Bsh1285I CGRYCG 5 cut(s) 192, 214, 232, 289, 427
BshFI GGCC 5 cut(s) 191, 231, 308, 318, 426
BshNI GGYRCC 2 cut(s) 403, 592
BsiEI CGRYCG 5 cut(s) 192, 214, 232, 289, 427
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 9 cut(s) 173, 178, 188, 232, 250, 380, 413, 503, 590
BsiWI CGTACG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 117, 256
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 5 cut(s) 191, 231, 308, 318, 426
Bsp1286I GDGCHC 1 cut(s) 453
Bsp13I TCCGGA 1 cut(s) 249
Bsp143I GATC 6 cut(s) 159, 211, 220, 438, 553, 608
Bsp19I CCATGG 2 cut(s) 78, 313
Bsp68I TCGCGA 2 cut(s) 240, 299
BspACI CCGC 8 cut(s) 127, 203, 276, 289, 309, 330, 410, 542
BspANI GGCC 5 cut(s) 191, 231, 308, 318, 426
BspCNI CTCAG 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 249
BspFNI CGCG 4 cut(s) 97, 240, 278, 299
BspLI GGNNCC 3 cut(s) 8, 405, 594
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 2 cut(s) 167, 433
BspT107I GGYRCC 2 cut(s) 403, 592
BsrFI RCCGGY 2 cut(s) 412, 589
BssAI RCCGGY 2 cut(s) 412, 589
BssECI CCNNGG 4 cut(s) 78, 313, 480, 481
BssMI GATC 6 cut(s) 159, 211, 220, 438, 553, 608
BssNI GRCGYC 1 cut(s) 404
BssSI CACGAG 1 cut(s) 452
BssT1I CCWWGG 2 cut(s) 78, 313
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 103, 368, 470
Bst6I CTCTTC 2 cut(s) 109, 333
BstACI GRCGYC 1 cut(s) 404
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 242, 306, 402
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 2 cut(s) 78, 313
BstFNI CGCG 4 cut(s) 97, 240, 278, 299
BstH2I RGCGCY 2 cut(s) 386, 407
BstHHI GCGC 4 cut(s) 97, 280, 385, 406
BstKTI GATC 6 cut(s) 162, 214, 223, 441, 556, 611
BstMBI GATC 6 cut(s) 159, 211, 220, 438, 553, 608
BstMCI CGRYCG 5 cut(s) 192, 214, 232, 289, 427
BstMWI GCNNNNNNNGC 8 cut(s) 237, 305, 329, 380, 391, 432, 599, 640
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 186, 231, 480
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 4 cut(s) 97, 240, 278, 299
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 1 cut(s) 220
BstZI CGGCCG 3 cut(s) 189, 229, 424
BsuRI GGCC 5 cut(s) 191, 231, 308, 318, 426
BtgI CCRYGG 2 cut(s) 78, 313
BtuMI TCGCGA 2 cut(s) 240, 299
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 242, 306, 402
CfoI GCGC 4 cut(s) 97, 280, 385, 406
Cfr10I RCCGGY 2 cut(s) 412, 589
Cfr13I GGNCC 3 cut(s) 6, 175, 247
CpoI CGGWCCG 1 cut(s) 175
Csp6I GTAC 2 cut(s) 445, 733
CspI CGGWCCG 1 cut(s) 175
CviAII CATG 3 cut(s) 79, 314, 646
CviQI GTAC 2 cut(s) 445, 733
DdeI CTNAG 1 cut(s) 90
DinI GGCGCC 1 cut(s) 405
DpnI GATC 6 cut(s) 161, 213, 222, 440, 555, 610
DpnII GATC 6 cut(s) 159, 211, 220, 438, 553, 608
DrdI GACNNNNNNGTC 2 cut(s) 182, 259
DseDI GACNNNNNNGTC 2 cut(s) 182, 259
EaeI YGGCCR 3 cut(s) 189, 229, 424
EagI CGGCCG 3 cut(s) 189, 229, 424
Eam1104I CTCTTC 2 cut(s) 109, 333
EarI CTCTTC 2 cut(s) 109, 333
EciI GGCGGA 1 cut(s) 399
EclXI CGGCCG 3 cut(s) 189, 229, 424
Eco130I CCWWGG 2 cut(s) 78, 313
Eco47I GGWCC 3 cut(s) 6, 175, 247
Eco52I CGGCCG 3 cut(s) 189, 229, 424
Eco57I CTGAAG 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 2 cut(s) 78, 313
EgeI GGCGCC 1 cut(s) 405
EheI GGCGCC 1 cut(s) 405
ErhI CCWWGG 2 cut(s) 78, 313
FaeI CATG 3 cut(s) 82, 317, 649
FaiI YATR 6 cut(s) 33, 80, 266, 315, 477, 647
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 78, 313, 645
Fnu4HI GCNGC 2 cut(s) 281, 309
Fsp4HI GCNGC 2 cut(s) 281, 309
GlaI GCGC 4 cut(s) 96, 279, 384, 405
GluI GCNGC 2 cut(s) 281, 309
GsuI CTGGAG 2 cut(s) 278, 552
HaeII RGCGCY 2 cut(s) 386, 407
HaeIII GGCC 5 cut(s) 191, 231, 308, 318, 426
HapII CCGG 9 cut(s) 173, 178, 188, 232, 250, 380, 413, 503, 590
HhaI GCGC 4 cut(s) 97, 280, 385, 406
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 3 cut(s) 82, 317, 649
Hin6I GCGC 4 cut(s) 95, 278, 383, 404
HinP1I GCGC 4 cut(s) 95, 278, 383, 404
HinfI GANTC 3 cut(s) 253, 260, 584
HpaII CCGG 9 cut(s) 173, 178, 188, 232, 250, 380, 413, 503, 590
HphI GGTGA 4 cut(s) 319, 427, 579, 628
Hpy166II GTNNAC 2 cut(s) 352, 364
Hpy188I TCNGA 2 cut(s) 54, 149
Hpy188III TCNNGA 7 cut(s) 239, 250, 257, 298, 460, 612, 675
Hpy8I GTNNAC 2 cut(s) 352, 364
Hpy99I CGWCG 2 cut(s) 197, 230
HpyAV CCTTC 1 cut(s) 676
HpyCH4III ACNGT 3 cut(s) 103, 368, 470
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 8 cut(s) 237, 305, 329, 380, 391, 432, 599, 640
HpyF3I CTNAG 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 3 cut(s) 82, 317, 649
HspAI GCGC 4 cut(s) 95, 278, 383, 404
KasI GGCGCC 1 cut(s) 403
Kpn2I TCCGGA 1 cut(s) 249
Kzo9I GATC 6 cut(s) 159, 211, 220, 438, 553, 608
LmnI GCTCC 3 cut(s) 343, 371, 533
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 4 cut(s) 403, 517, 553, 589
MaeIII GTNAC 3 cut(s) 103, 415, 581
MalI GATC 6 cut(s) 161, 213, 222, 440, 555, 610
MboI GATC 6 cut(s) 159, 211, 220, 438, 553, 608
MboII GAAGA 7 cut(s) 126, 149, 152, 350, 441, 548, 711
MfeI CAATTG 1 cut(s) 629
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 3 cut(s) 55, 629, 689
Mly113I GGCGCC 1 cut(s) 404
MlyI GAGTC 3 cut(s) 247, 269, 578
MroI TCCGGA 1 cut(s) 249
MseI TTAA 4 cut(s) 390, 498, 662, 713
MslI CAYNNNNRTG 2 cut(s) 359, 650
MspI CCGG 9 cut(s) 173, 178, 188, 232, 250, 380, 413, 503, 590
MspR9I CCNGG 3 cut(s) 188, 233, 482
MunI CAATTG 1 cut(s) 629
MvaI CCWGG 1 cut(s) 482
MvnI CGCG 4 cut(s) 97, 240, 278, 299
MwoI GCNNNNNNNGC 8 cut(s) 237, 305, 329, 380, 391, 432, 599, 640
NarI GGCGCC 1 cut(s) 404
NciI CCSGG 2 cut(s) 188, 233
NcoI CCATGG 2 cut(s) 78, 313
NdeII GATC 6 cut(s) 159, 211, 220, 438, 553, 608
NlaIII CATG 3 cut(s) 82, 317, 649
NlaIV GGNNCC 3 cut(s) 8, 405, 594
NmuCI GTSAC 3 cut(s) 103, 415, 581
NruI TCGCGA 2 cut(s) 240, 299
PasI CCCWGGG 1 cut(s) 481
Pfl23II CGTACG 1 cut(s) 444
PkrI GCNGC 2 cut(s) 282, 310
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 3 cut(s) 247, 268, 578
PluTI GGCGCC 1 cut(s) 407
PpsI GAGTC 3 cut(s) 247, 268, 578
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspLI CGTACG 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 8, 405, 594
PspPI GGNCC 3 cut(s) 6, 175, 247
PspPPI RGGWCCY 1 cut(s) 6
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 220
PvuI CGATCG 1 cut(s) 214
RruI TCGCGA 2 cut(s) 240, 299
RsaI GTAC 2 cut(s) 446, 734
RsaNI GTAC 2 cut(s) 445, 733
RseI CAYNNNNRTG 2 cut(s) 359, 650
Rsr2I CGGWCCG 1 cut(s) 175
RsrII CGGWCCG 1 cut(s) 175
SaqAI TTAA 4 cut(s) 390, 498, 662, 713
SatI GCNGC 2 cut(s) 281, 309
Sau3AI GATC 6 cut(s) 159, 211, 220, 438, 553, 608
Sau96I GGNCC 3 cut(s) 6, 175, 247
SchI GAGTC 3 cut(s) 247, 269, 578
ScrFI CCNGG 3 cut(s) 188, 233, 482
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 4 cut(s) 403, 517, 553, 589
SfcI CTRYAG 1 cut(s) 398
SfoI GGCGCC 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 412
SinI GGWCC 3 cut(s) 6, 175, 247
SmiMI CAYNNNNRTG 2 cut(s) 359, 650
Sse9I AATT 3 cut(s) 55, 629, 689
SsiI CCGC 8 cut(s) 127, 203, 276, 289, 309, 330, 410, 542
SspDI GGCGCC 1 cut(s) 403
StyD4I CCNGG 3 cut(s) 186, 231, 480
StyI CCWWGG 2 cut(s) 78, 313
TaaI ACNGT 3 cut(s) 103, 368, 470
TaqI TCGA 5 cut(s) 135, 162, 459, 607, 722
TasI AATT 3 cut(s) 55, 629, 689
TauI GCSGC 1 cut(s) 311
Tru1I TTAA 4 cut(s) 390, 498, 662, 713
Tru9I TTAA 4 cut(s) 390, 498, 662, 713
TseFI GTSAC 3 cut(s) 103, 415, 581
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 3 cut(s) 103, 415, 581
TspDTI ATGAA 1 cut(s) 662
VpaK11BI GGWCC 3 cut(s) 6, 175, 247
XapI RAATTY 2 cut(s) 55, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.