Rmu_sc0000021.1_g000004

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000021.1
OG0000306
Physical Location & Seq
Forward (+)
30509 .. 31293
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000021.1_g000004.1.cds

Sequence Viewer

Length: 663 bp
atgggatctccctatgtgtccccagctcttcatgacccagaatacggcgtctgttccaaggacatcaccatctctcacaacccgaaaatctcagctcgccttttctgccctcaaaccctaaaccaacatgtcccaaaccaaaagcttccggttttggtctacttccacggcggtggtttttgctttgagtctgctttctcgtctgatcaccaccgcttcctcaaccgcctagtctcgaaagcccaagtcgtcgccatctcagttgagtacagacttgccccagaagtcccacttcccttttgttaccaagactgctgggctgctcttcaatgggtcgcttcgcatactataaatgaagagcgtgttagtgctattaacaaagagccatggctagccagctacggctatttcgatagagtttacattgatggtgacagtacaggtggcgaagagttcgagaagtatctgccttgcctggtttgggggattttgaatccgtcggctccgggaggtcttgataatccgacggttaacccggcaggtttgggtgctccgagcatggctgggcttgggtgctctaagctgcttgtgtgtctttctagcaatgatgagttgaggcatagaggtgtttggtattataatttggtcatggatttccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

220

Amino Acids

24.44

Weight (kDa)

5.8

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 159
AciI CCGC 3 cut(s) 171, 214, 226
AclWI GGATC 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 269, 439
AfiI CCNNNNNNNGG 2 cut(s) 44, 481
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 2 cut(s) 329, 493
AjnI CCWGG 1 cut(s) 474
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 5 cut(s) 26, 95, 145, 399, 583
AluI AGCT 5 cut(s) 26, 95, 145, 399, 583
Alw21I GWGCWC 2 cut(s) 553, 578
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 320, 583
AsuC2I CCSGG 2 cut(s) 507, 536
AsuHPI GGTGA 3 cut(s) 58, 200, 443
AsuNHI GCTAGC 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 553, 578
BbvI GCAGC 2 cut(s) 307, 570
BccI CCATC 3 cut(s) 77, 263, 422
BceAI ACGGC 3 cut(s) 61, 184, 418
BciT130I CCWGG 1 cut(s) 476
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 2 cut(s) 507, 536
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 4 cut(s) 230, 392, 600, 661
BfuAI ACCTGC 1 cut(s) 530
BisI GCNGC 2 cut(s) 321, 584
BlsI GCNGC 2 cut(s) 322, 585
Bme1390I CCNGG 3 cut(s) 476, 507, 536
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 3 cut(s) 476, 507, 536
BmtI GCTAGC 1 cut(s) 395
BpuMI CCSGG 2 cut(s) 507, 536
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 57, 166, 386
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 481
Bse3DI GCAATG 1 cut(s) 610
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 57, 166, 386
BseLI CCNNNNNNNGG 2 cut(s) 44, 481
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 2 cut(s) 105, 273
BseXI GCAGC 2 cut(s) 307, 570
BseYI CCCAGC 3 cut(s) 22, 315, 563
BsiHKAI GWGCWC 2 cut(s) 553, 578
BsiSI CCGG 3 cut(s) 149, 506, 536
BslFI GGGAC 3 cut(s) 4, 116, 272
BslI CCNNNNNNNGG 2 cut(s) 44, 481
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 3 cut(s) 4, 116, 272
Bsp1286I GDGCHC 2 cut(s) 553, 578
Bsp143I GATC 2 cut(s) 5, 205
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 3 cut(s) 171, 214, 226
BspCNI CTCAG 2 cut(s) 104, 272
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 530
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 3 cut(s) 33, 330, 351
BsrDI GCAATG 1 cut(s) 610
BssECI CCNNGG 3 cut(s) 57, 166, 386
BssMI GATC 2 cut(s) 5, 205
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 2 cut(s) 57, 386
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 437, 529
Bst6I CTCTTC 4 cut(s) 33, 330, 351, 444
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 97, 393, 397
BstDEI CTNAG 3 cut(s) 91, 259, 579
BstDSI CCRYGG 2 cut(s) 166, 386
BstKTI GATC 2 cut(s) 8, 208
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 5, 205
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 474, 505, 534
BstV1I GCAGC 2 cut(s) 307, 570
BstX2I RGATCY 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 166, 386
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 97, 393, 397
CciI TCATGA 1 cut(s) 31
CseI GACGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 268, 438
CviAII CATG 5 cut(s) 32, 128, 387, 559, 649
CviQI GTAC 2 cut(s) 268, 438
DdeI CTNAG 3 cut(s) 91, 259, 579
DpnI GATC 2 cut(s) 7, 207
DpnII GATC 2 cut(s) 5, 205
Eam1104I CTCTTC 4 cut(s) 33, 330, 351, 444
EarI CTCTTC 4 cut(s) 33, 330, 351, 444
Eco130I CCWWGG 2 cut(s) 57, 386
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 2 cut(s) 57, 386
ErhI CCWWGG 2 cut(s) 57, 386
FaeI CATG 5 cut(s) 35, 131, 390, 562, 652
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 3 cut(s) 4, 116, 272
FatI CATG 5 cut(s) 31, 127, 386, 558, 648
FbaI TGATCA 1 cut(s) 205
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 321, 584
Fsp4HI GCNGC 2 cut(s) 321, 584
FspBI CTAG 4 cut(s) 230, 392, 600, 661
GluI GCNGC 2 cut(s) 321, 584
GsaI CCCAGC 3 cut(s) 26, 319, 567
HapII CCGG 3 cut(s) 149, 506, 536
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 5 cut(s) 35, 131, 390, 562, 652
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 2 cut(s) 188, 493
HpaI GTTAAC 1 cut(s) 532
HpaII CCGG 3 cut(s) 149, 506, 536
HphI GGTGA 3 cut(s) 58, 200, 443
Hpy166II GTNNAC 3 cut(s) 160, 421, 532
Hpy188I TCNGA 3 cut(s) 205, 525, 555
Hpy188III TCNNGA 4 cut(s) 32, 235, 457, 515
Hpy8I GTNNAC 3 cut(s) 160, 421, 532
Hpy99I CGWCG 3 cut(s) 254, 502, 529
HpyCH4III ACNGT 2 cut(s) 437, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 3 cut(s) 91, 259, 579
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 5 cut(s) 35, 131, 390, 562, 652
Ksp22I TGATCA 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 5, 205
LguI GCTCTTC 3 cut(s) 33, 330, 351
LmnI GCTCC 2 cut(s) 508, 556
Lsp1109I GCAGC 2 cut(s) 307, 570
MaeI CTAG 4 cut(s) 230, 392, 600, 661
MaeIII GTNAC 2 cut(s) 302, 431
MalI GATC 2 cut(s) 7, 207
MboI GATC 2 cut(s) 5, 205
MboII GAAGA 4 cut(s) 20, 317, 368, 461
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 2 cut(s) 553, 578
MluCI AATT 1 cut(s) 640
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 548
MnlI CCTC 5 cut(s) 120, 230, 503, 609, 617
MseI TTAA 2 cut(s) 375, 531
MslI CAYNNNNRTG 2 cut(s) 171, 624
MspI CCGG 3 cut(s) 149, 506, 536
MspR9I CCNGG 3 cut(s) 476, 507, 536
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 507, 536
NcoI CCATGG 1 cut(s) 386
NdeII GATC 2 cut(s) 5, 205
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 35, 131, 390, 562, 652
NlaIV GGNNCC 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 171
PagI TCATGA 1 cut(s) 31
PciI ACATGT 1 cut(s) 127
PciSI GCTCTTC 3 cut(s) 33, 330, 351
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 1 cut(s) 493
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 2 cut(s) 322, 585
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 127
PsiI TTATAA 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 3 cut(s) 22, 315, 563
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 504
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 2 cut(s) 269, 439
RsaNI GTAC 2 cut(s) 268, 438
RseI CAYNNNNRTG 2 cut(s) 171, 624
SapI GCTCTTC 3 cut(s) 33, 330, 351
SaqAI TTAA 2 cut(s) 375, 531
SatI GCNGC 2 cut(s) 321, 584
Sau3AI GATC 2 cut(s) 5, 205
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 476, 507, 536
SduI GDGCHC 2 cut(s) 553, 578
SetI ASST 9 cut(s) 28, 97, 147, 401, 445, 514, 544, 585, 628
SmiMI CAYNNNNRTG 2 cut(s) 171, 624
Sse9I AATT 1 cut(s) 640
SsiI CCGC 3 cut(s) 171, 214, 226
SspMI CTAG 4 cut(s) 230, 392, 600, 661
StyD4I CCNGG 3 cut(s) 474, 505, 534
StyI CCWWGG 2 cut(s) 57, 386
TaaI ACNGT 2 cut(s) 437, 529
TaqI TCGA 3 cut(s) 236, 411, 456
TasI AATT 1 cut(s) 640
TatI WGTACW 2 cut(s) 267, 437
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 2 cut(s) 375, 531
Tru9I TTAA 2 cut(s) 375, 531
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 2 cut(s) 320, 583
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 20, 369
TspGWI ACGGA 1 cut(s) 486
XceI RCATGY 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 4 cut(s) 230, 392, 600, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.