Rmu_sc0020688.1_g000001

Arm repeat protein interacting with

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020688.1
Physical Location & Seq
Reverse (-)
1 .. 786
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020688.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atggaccgccgctccgtcaccaccagacgccgcagtctgaagcggaagctggaacaagacttcgtagaggaaacccaagaaaacgagccggatcgtaaatctccggccgtcgatccccaagatccgcttcttgagattcgcgcccacgtcaaggttctcgactcctccttctccgcctccgacgccgaccgcgccgccgccaaggtcgctgcccgagccctcgtcgaactcgccaagaacgaggacaatctgaaagacttagtggaatgcggagcggttccggctctggttaagcatctacggacgcccccgccggagagaggcggaagccacagttcgattccgtgtgagcacgaggtcgagaaagaaagtgctttcgcgcttaatctcatcgccgttaag

Protein Analysis

134

Amino Acids

14.85

Weight (kDa)

6.1

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 33
AccBSI CCGCTC 2 cut(s) 12, 275
AccII CGCG 3 cut(s) 141, 192, 380
AclWI GGATC 3 cut(s) 99, 107, 116
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 59
AcyI GRCGYC 3 cut(s) 28, 183, 305
AfiI CCNNNNNNNGG 2 cut(s) 151, 320
AjiI CACGTC 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 354
AlwI GGATC 3 cut(s) 99, 107, 116
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 3 cut(s) 143, 194, 382
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 220
BauI CACGAG 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 2 cut(s) 92, 380
BisI GCNGC 5 cut(s) 10, 31, 195, 198, 210
BlsI GCNGC 5 cut(s) 11, 32, 196, 199, 211
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 152
BsaHI GRCGYC 3 cut(s) 28, 183, 305
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 320
BseDI CCNNGG 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 151, 320
BseRI GAGGAG 1 cut(s) 154
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 3 cut(s) 141, 192, 380
Bsh1285I CGRYCG 2 cut(s) 108, 190
BshFI GGCC 1 cut(s) 107
BsiEI CGRYCG 2 cut(s) 108, 190
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 4 cut(s) 89, 104, 281, 314
BslI CCNNNNNNNGG 2 cut(s) 151, 320
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 220, 354
Bsp143I GATC 3 cut(s) 91, 112, 121
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 3 cut(s) 141, 192, 380
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 3 cut(s) 99, 107, 116
BsrBI CCGCTC 2 cut(s) 12, 275
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 91, 112, 121
BssNI GRCGYC 3 cut(s) 28, 183, 305
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 335
BstACI GRCGYC 3 cut(s) 28, 183, 305
BstDEI CTNAG 1 cut(s) 259
BstFNI CGCG 3 cut(s) 141, 192, 380
BstHHI GCGC 3 cut(s) 143, 194, 382
BstKTI GATC 3 cut(s) 94, 115, 124
BstMBI GATC 3 cut(s) 91, 112, 121
BstMCI CGRYCG 2 cut(s) 108, 190
BstMWI GCNNNNNNNGC 5 cut(s) 182, 191, 206, 215, 281
BstUI CGCG 3 cut(s) 141, 192, 380
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 376
BtrI CACGTC 1 cut(s) 148
CfoI GCGC 3 cut(s) 143, 194, 382
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 3 cut(s) 36, 191, 313
CviJI RGCY 6 cut(s) 49, 88, 107, 218, 284, 330
CviKI_1 RGCY 6 cut(s) 49, 88, 107, 218, 284, 330
DdeI CTNAG 1 cut(s) 259
DpnI GATC 3 cut(s) 93, 114, 123
DpnII GATC 3 cut(s) 91, 112, 121
DrdI GACNNNNNNGTC 1 cut(s) 33
DseDI GACNNNNNNGTC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
EciI GGCGGA 2 cut(s) 163, 339
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 201
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 10, 31, 195, 198, 210
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 5 cut(s) 10, 31, 195, 198, 210
GlaI GCGC 3 cut(s) 142, 193, 381
GluI GCNGC 5 cut(s) 10, 31, 195, 198, 210
HaeIII GGCC 1 cut(s) 107
HapII CCGG 4 cut(s) 89, 104, 281, 314
HgaI GACGC 3 cut(s) 36, 191, 313
HhaI GCGC 3 cut(s) 143, 194, 382
Hin1I GRCGYC 3 cut(s) 28, 183, 305
Hin6I GCGC 3 cut(s) 141, 192, 380
HinP1I GCGC 3 cut(s) 141, 192, 380
HinfI GANTC 3 cut(s) 136, 161, 340
HpaII CCGG 4 cut(s) 89, 104, 281, 314
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 3 cut(s) 39, 181, 252
Hpy188III TCNNGA 3 cut(s) 131, 158, 361
Hpy99I CGWCG 3 cut(s) 113, 185, 227
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 191, 206, 215, 281
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 3 cut(s) 28, 183, 305
HspAI GCGC 3 cut(s) 141, 192, 380
Kzo9I GATC 3 cut(s) 91, 112, 121
LmnI GCTCC 2 cut(s) 17, 272
LpnPI CCDG 7 cut(s) 35, 37, 102, 117, 272, 294, 327
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 304
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 93, 114, 123
MbiI CCGCTC 2 cut(s) 12, 275
MboI GATC 3 cut(s) 91, 112, 121
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 220, 354
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 7 cut(s) 61, 175, 187, 230, 235, 314, 349
MseI TTAA 3 cut(s) 291, 384, 399
MspI CCGG 4 cut(s) 89, 104, 281, 314
Mva1269I GAATGC 1 cut(s) 272
MvnI CGCG 3 cut(s) 141, 192, 380
MwoI GCNNNNNNNGC 5 cut(s) 182, 191, 206, 215, 281
NdeII GATC 3 cut(s) 91, 112, 121
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 136, 340
PkrI GCNGC 5 cut(s) 11, 32, 196, 199, 211
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 121
SaqAI TTAA 3 cut(s) 291, 384, 399
SatI GCNGC 5 cut(s) 10, 31, 195, 198, 210
Sau3AI GATC 3 cut(s) 91, 112, 121
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 2 cut(s) 220, 354
SetI ASST 5 cut(s) 51, 150, 156, 207, 360
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 150
TaqI TCGA 5 cut(s) 111, 159, 225, 338, 360
TauI GCSGC 4 cut(s) 12, 33, 197, 200
TfiI GAWTC 2 cut(s) 136, 340
Tru1I TTAA 3 cut(s) 291, 384, 399
Tru9I TTAA 3 cut(s) 291, 384, 399
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 16
TspGWI ACGGA 3 cut(s) 4, 316, 333
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.