Rh5CG457700

Arm repeat protein interacting with

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
63536030 .. 63544011
7982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG457700.1

Sequence Viewer

Length: 771 bp
ATGGACGGCTGCTCCGTCACCACCAGTCGCCGCAGTCTGAAGCCGAAGCTGGAACAAGACTTCATAGAAGAAACCCAAGAAAACGAGCCGGATCGTAAATCTTCGGCCGTCGATCCCCAAGGTCCGCTTCTTGAGATTCGCGTCCATGTCAAGGTTCTCGACTCCACCTTCTCTGCCTTCGACGCCGATCACGTCGCCGCCAAGGTCGCCGCCCGAGCCCTTGTCGAACTCGCCAAGAATGAGGACAATCTGAAAGACTTAGTGGAATGCGGAGCAGTTCCGGCTCTGGTTAATCAACTACGGGCGCCGCCGCCGGAGAGAGGTGGAAGCCACTGTCCGATTCCGTCTGAGCACGAGGTCGAGAAAGAAAGTGCTTTCGCGCTTAATCTCATCGCCGTTAAGCCGAAAAATCAACATCTCATAGTTGATGCTGGAGATTGGGAAGTTGGCTGTGCTCCTTCGCGCATTGTGCAGATGCCCCTATCGTGCAAGTTTGCAGAGGACGACGGCGAGACGAAGCATCTAGAAGCCCTTGAAGGAGCCCAAACGCGCCTCCACCTCTTCCAGATCGACCTCCTAGACTACGATTCCATCTCCGCCGTAGTCGAAGACTTTTATAAGCAAGCCAGGCACCCAGCTCGTTCTCCGCCGTTTCGAGTGACTCTCTCCATCCCCACCTCTCTCTCGTCAGTCGTCTCCGAGCTTCAGGACTCAGGAGTTCAGGACTTCAGATTGGAGATTTGGAGCTACTTTCATTGCTTGATGCATTGA

Protein Analysis

256

Amino Acids

28.39

Weight (kDa)

5.06

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AccB1I GGYRCC 2 cut(s) 304, 630
AccII CGCG 4 cut(s) 141, 380, 463, 550
AciI CCGC 9 cut(s) 31, 125, 198, 210, 270, 308, 311, 597, 647
AclWI GGATC 2 cut(s) 99, 107
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 3 cut(s) 59, 689, 712
AcyI GRCGYC 2 cut(s) 183, 305
AfiI CCNNNNNNNGG 2 cut(s) 151, 320
AgsI TTSAA 1 cut(s) 536
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 1 cut(s) 626
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 4 cut(s) 49, 638, 703, 747
AluI AGCT 4 cut(s) 49, 638, 703, 747
Alw21I GWGCWC 2 cut(s) 354, 457
Alw26I GTCTC 2 cut(s) 506, 700
AlwI GGATC 2 cut(s) 99, 107
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 9
AspLEI GCGC 4 cut(s) 307, 382, 465, 552
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 2 cut(s) 304, 630
BanII GRGCYC 2 cut(s) 220, 544
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 354, 457
BccI CCATC 2 cut(s) 599, 677
BceAI ACGGC 6 cut(s) 22, 92, 380, 523, 584, 634
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 506, 700
BfaI CTAG 2 cut(s) 524, 578
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 6 cut(s) 10, 31, 198, 210, 308, 311
BlsI GCNGC 6 cut(s) 11, 32, 199, 211, 309, 312
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 306, 541, 632
BmrFI CCNGG 1 cut(s) 628
BmsI GCATC 4 cut(s) 418, 465, 529, 753
BpiI GAAGAC 1 cut(s) 615
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 152
BsaHI GRCGYC 2 cut(s) 183, 305
BsaJI CCNNGG 2 cut(s) 118, 201
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 320
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 754
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 2 cut(s) 118, 201
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 2 cut(s) 151, 320
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 2 cut(s) 339, 726
BseNI ACTGG 1 cut(s) 24
BseX3I CGGCCG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 4 cut(s) 141, 380, 463, 550
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 2 cut(s) 304, 630
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 354, 457
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 3 cut(s) 89, 281, 314
BslI CCNNNNNNNGG 2 cut(s) 151, 320
BsmAI GTCTC 2 cut(s) 506, 700
BsmBI CGTCTC 2 cut(s) 506, 700
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 4 cut(s) 220, 354, 457, 544
Bsp143I GATC 4 cut(s) 91, 112, 187, 567
BspACI CCGC 9 cut(s) 31, 125, 198, 210, 270, 308, 311, 597, 647
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 340, 725
BspFNI CGCG 4 cut(s) 141, 380, 463, 550
BspLI GGNNCC 3 cut(s) 306, 541, 632
BspPI GGATC 2 cut(s) 99, 107
BspT107I GGYRCC 2 cut(s) 304, 630
BsrDI GCAATG 1 cut(s) 754
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 118, 201
BssMI GATC 4 cut(s) 91, 112, 187, 567
BssNI GRCGYC 2 cut(s) 183, 305
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 118, 201
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 2 cut(s) 183, 305
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 3 cut(s) 259, 348, 712
BstF5I GGATG 1 cut(s) 669
BstFNI CGCG 4 cut(s) 141, 380, 463, 550
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 4 cut(s) 307, 382, 465, 552
BstKTI GATC 4 cut(s) 94, 115, 190, 570
BstMAI GTCTC 2 cut(s) 506, 700
BstMBI GATC 4 cut(s) 91, 112, 187, 567
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 6 cut(s) 182, 206, 215, 281, 469, 628
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 626
BstUI CGCG 4 cut(s) 141, 380, 463, 550
BstV2I GAAGAC 1 cut(s) 615
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 376
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 669
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 624
CfoI GCGC 4 cut(s) 307, 382, 465, 552
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 2 cut(s) 130, 191
CviAII CATG 1 cut(s) 146
DdeI CTNAG 3 cut(s) 259, 348, 712
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 93, 114, 189, 569
DpnII GATC 4 cut(s) 91, 112, 187, 567
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
EciI GGCGGA 2 cut(s) 586, 636
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 118, 201
Eco24I GRGCYC 2 cut(s) 220, 544
Eco47I GGWCC 1 cut(s) 122
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 3 cut(s) 59, 689, 712
Eco88I CYCGRG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 626
EcoT14I CCWWGG 2 cut(s) 118, 201
EcoT22I ATGCAT 1 cut(s) 768
EcoT38I GRGCYC 2 cut(s) 220, 544
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 2 cut(s) 118, 201
Esp3I CGTCTC 2 cut(s) 506, 700
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 65, 147, 422, 618
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 10, 31, 198, 210, 308, 311
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 2 cut(s) 220, 544
Fsp4HI GCNGC 6 cut(s) 10, 31, 198, 210, 308, 311
FspBI CTAG 2 cut(s) 524, 578
GlaI GCGC 4 cut(s) 306, 381, 464, 551
GluI GCNGC 6 cut(s) 10, 31, 198, 210, 308, 311
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 107
HapII CCGG 3 cut(s) 89, 281, 314
HgaI GACGC 2 cut(s) 130, 191
HhaI GCGC 4 cut(s) 307, 382, 465, 552
Hin1I GRCGYC 2 cut(s) 183, 305
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 4 cut(s) 305, 380, 463, 550
HinP1I GCGC 4 cut(s) 305, 380, 463, 550
HinfI GANTC 6 cut(s) 136, 161, 340, 587, 661, 710
HpaII CCGG 3 cut(s) 89, 281, 314
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 6 cut(s) 39, 252, 339, 349, 700, 731
Hpy188III TCNNGA 8 cut(s) 131, 158, 361, 524, 565, 707, 714, 722
Hpy99I CGWCG 4 cut(s) 113, 185, 197, 509
HpyAV CCTTC 4 cut(s) 178, 187, 468, 530
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 472, 489, 497, 766
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 206, 215, 281, 469, 628
HpyF3I CTNAG 3 cut(s) 259, 348, 712
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 2 cut(s) 183, 305
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 4 cut(s) 305, 380, 463, 550
KasI GGCGCC 1 cut(s) 304
Kzo9I GATC 4 cut(s) 91, 112, 187, 567
LmnI GCTCC 5 cut(s) 17, 272, 460, 539, 744
LweI GCATC 4 cut(s) 418, 465, 529, 753
MaeI CTAG 2 cut(s) 524, 578
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 16, 658
MalI GATC 4 cut(s) 93, 114, 189, 569
MboI GATC 4 cut(s) 91, 112, 187, 567
MboII GAAGA 4 cut(s) 80, 93, 553, 620
MhlI GDGCHC 4 cut(s) 220, 354, 457, 544
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 3 cut(s) 155, 655, 704
MnlI CCTC 8 cut(s) 235, 314, 349, 493, 563, 569, 584, 688
Mph1103I ATGCAT 1 cut(s) 768
MseI TTAA 3 cut(s) 291, 384, 399
MspI CCGG 3 cut(s) 89, 281, 314
MspR9I CCNGG 1 cut(s) 628
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 628
MvnI CGCG 4 cut(s) 141, 380, 463, 550
MwoI GCNNNNNNNGC 6 cut(s) 182, 206, 215, 281, 469, 628
NarI GGCGCC 1 cut(s) 305
NdeII GATC 4 cut(s) 91, 112, 187, 567
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 3 cut(s) 306, 541, 632
NmuCI GTSAC 2 cut(s) 16, 658
NsiI ATGCAT 1 cut(s) 768
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 189
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 3 cut(s) 136, 340, 587
PkrI GCNGC 6 cut(s) 11, 32, 199, 211, 309, 312
PleI GAGTC 3 cut(s) 155, 655, 704
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 3 cut(s) 155, 655, 704
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 626
PspFI CCCAGC 1 cut(s) 634
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 3 cut(s) 306, 541, 632
PspPI GGNCC 1 cut(s) 122
SaqAI TTAA 3 cut(s) 291, 384, 399
SatI GCNGC 6 cut(s) 10, 31, 198, 210, 308, 311
Sau3AI GATC 4 cut(s) 91, 112, 187, 567
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 3 cut(s) 155, 655, 704
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 4 cut(s) 220, 354, 457, 544
SfaNI GCATC 4 cut(s) 418, 465, 529, 753
SfoI GGCGCC 1 cut(s) 306
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 9 cut(s) 31, 125, 198, 210, 270, 308, 311, 597, 647
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 2 cut(s) 524, 578
StyD4I CCNGG 1 cut(s) 626
StyI CCWWGG 2 cut(s) 118, 201
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 195
TaqI TCGA 8 cut(s) 111, 159, 180, 225, 360, 570, 606, 655
TauI GCSGC 5 cut(s) 33, 200, 212, 310, 313
TfiI GAWTC 3 cut(s) 136, 340, 587
Tru1I TTAA 3 cut(s) 291, 384, 399
Tru9I TTAA 3 cut(s) 291, 384, 399
TscAI CASTG 1 cut(s) 338
TseFI GTSAC 2 cut(s) 16, 658
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 2 cut(s) 16, 658
TspDTI ATGAA 2 cut(s) 52, 743
TspGWI ACGGA 2 cut(s) 4, 333
TspRI CASTG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 523
XspI CTAG 2 cut(s) 524, 578
Zsp2I ATGCAT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.