Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000306

Physical Location & Seq

Genomic Coordinates Forward (+)

35239958 .. 35240743

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG205000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTGCCCGGTTTTTCTCCCGACAATTTTTTTTTTTCAGCCGGAAAAGAAAAAGCTTTTACTTTCTTCTTTTCTTCAGAAATTCCGAAAATACCCTCCGATTTTTCTCTCAAAACTTTCTTTCTCTGTCTGTCTCTCACTGACCTCTATTCAAAATCCAAAAAAATTCGTATCTCTGGATCAGCTTCTCTTCCATTTTCGCGTTTCGTTGATGGAGCTGCCGAGGCGCCAAGATCAGAGCCAATCGGAGAGGAAGGGGCAGAAGCGGAAACTGGAAGAGGAAATCGGAGAGGAGCGAGAGATCACGGTGCAGCAGTCCGGCGACGCCAGAAAAGCCATACTGCTTCAGGTCGCCGAGCAGGTTCAAGTTCTCGACTCTTCTTTTTCCTGGAGCGAAGCTGATCGAAACGCTGCCAAGCGCGCCACTCACGTCCTCGCCGAGCTCGCCAAGAACGAGGACGTAGTGAACGTCATCGTTGAAGGCGGTGCGGTTCCGGCTTTGGTGAAACATCTGCAAGCGCCGCCGTGCAGCGAGGTAGACCGGAGCTCTTCGAAGCACTGCGAACACGAGGTTGAGAAGGGCAGTGCCTTTGCACTAGGCCTTCTTGCCGTTAAGGTCACTCTACCTTTCGTAATTTTCAAATTTTCAATCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010187 GO:0016020 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm BTB

Protein Analysis

218

Amino Acids

24.6

Weight (kDa)

9.03

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19330
fragaria_vesca	FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica	MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica	Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis	pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis	RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata	RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora	Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa	Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha	Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana	Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	2 cut(s)	201, 420
AciI	CCGC	4 cut(s)	265, 483, 488, 521
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	80, 164, 641
AcuI	CTGAAG	2 cut(s)	59, 329
AcyI	GRCGYC	2 cut(s)	226, 324
AgsI	TTSAA	5 cut(s)	152, 365, 479, 640, 648
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	6 cut(s)	55, 184, 217, 398, 442, 546
AluI	AGCT	6 cut(s)	55, 184, 217, 398, 442, 546
Alw21I	GWGCWC	2 cut(s)	444, 548
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	4 cut(s)	217, 310, 410, 528
ApoI	RAATTY	3 cut(s)	80, 164, 641
AspLEI	GCGC	4 cut(s)	228, 420, 422, 520
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	514
AsuII	TTCGAA	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	2 cut(s)	444, 548
BauI	CACGAG	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	444, 548
BbvI	GCAGC	4 cut(s)	204, 322, 397, 540
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	2 cut(s)	508, 593
BciT130I	CCWGG	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	596
BfoI	RGCGCY	2 cut(s)	229, 521
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	5 cut(s)	218, 311, 411, 521, 529
BlsI	GCNGC	5 cut(s)	219, 312, 412, 522, 530
Bme1390I	CCNGG	2 cut(s)	8, 388
BmgBI	CACGTC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	227, 492
BmrFI	CCNGG	2 cut(s)	8, 388
BpmI	CTGGAG	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	226, 324
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	276
BsePI	GCGCGC	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	204, 322, 397, 540
BsgI	GTGCAG	2 cut(s)	329, 547
Bsh1236I	CGCG	2 cut(s)	201, 420
BshFI	GGCC	1 cut(s)	600
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	2 cut(s)	444, 548
BsiSI	CCGG	5 cut(s)	8, 41, 318, 494, 541
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	8, 444, 548
Bsp143I	GATC	4 cut(s)	178, 232, 300, 400
BspACI	CCGC	4 cut(s)	265, 483, 488, 521
BspANI	GGCC	1 cut(s)	600
BspFNI	CGCG	2 cut(s)	201, 420
BspLI	GGNNCC	2 cut(s)	227, 492
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	553
BspT104I	TTCGAA	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	221
BssHII	GCGCGC	1 cut(s)	418
BssMI	GATC	4 cut(s)	178, 232, 300, 400
BssNI	GRCGYC	2 cut(s)	226, 324
BssSI	CACGAG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	4 cut(s)	194, 270, 382, 553
BstACI	GRCGYC	2 cut(s)	226, 324
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	420, 444, 516
BstFNI	CGCG	2 cut(s)	201, 420
BstH2I	RGCGCY	2 cut(s)	229, 521
BstHHI	GCGC	4 cut(s)	228, 420, 422, 520
BstKTI	GATC	4 cut(s)	181, 235, 303, 403
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	178, 232, 300, 400
BstMWI	GCNNNNNNNGC	6 cut(s)	223, 332, 419, 443, 494, 520
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	6, 386
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	201, 420
BstV1I	GCAGC	4 cut(s)	204, 322, 397, 540
BsuRI	GGCC	1 cut(s)	600
BtrI	CACGTC	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	556, 589
BtsIMutI	CAGTG	3 cut(s)	137, 556, 589
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	420, 444, 516
CfoI	GCGC	4 cut(s)	228, 420, 422, 520
CseI	GACGC	1 cut(s)	332
DinI	GGCGCC	1 cut(s)	227
DpnI	GATC	4 cut(s)	180, 234, 302, 402
DpnII	GATC	4 cut(s)	178, 232, 300, 400
Eam1104I	CTCTTC	4 cut(s)	194, 270, 382, 553
EarI	CTCTTC	4 cut(s)	194, 270, 382, 553
Ecl136II	GAGCTC	2 cut(s)	442, 546
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	444, 548
Eco53kI	GAGCTC	2 cut(s)	442, 546
Eco57I	CTGAAG	2 cut(s)	59, 329
EcoICRI	GAGCTC	2 cut(s)	442, 546
EcoRII	CCWGG	1 cut(s)	386
EcoT38I	GRGCYC	2 cut(s)	444, 548
EgeI	GGCGCC	1 cut(s)	227
EheI	GGCGCC	1 cut(s)	227
FaiI	YATR	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	5 cut(s)	218, 311, 411, 521, 529
FriOI	GRGCYC	2 cut(s)	444, 548
Fsp4HI	GCNGC	5 cut(s)	218, 311, 411, 521, 529
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	4 cut(s)	227, 419, 421, 519
GluI	GCNGC	5 cut(s)	218, 311, 411, 521, 529
GsuI	CTGGAG	1 cut(s)	409
HaeII	RGCGCY	2 cut(s)	229, 521
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	5 cut(s)	8, 41, 318, 494, 541
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	4 cut(s)	228, 420, 422, 520
Hin1I	GRCGYC	2 cut(s)	226, 324
Hin6I	GCGC	4 cut(s)	226, 418, 420, 518
HinP1I	GCGC	4 cut(s)	226, 418, 420, 518
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	5 cut(s)	8, 41, 318, 494, 541
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	466, 538
Hpy188I	TCNGA	6 cut(s)	78, 86, 99, 237, 247, 287
Hpy188III	TCNNGA	3 cut(s)	19, 176, 371
Hpy8I	GTNNAC	2 cut(s)	466, 538
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	4 cut(s)	247, 473, 571, 611
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	3 cut(s)	429, 459, 468
HpyCH4V	TGCA	4 cut(s)	310, 514, 528, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	223, 332, 419, 443, 494, 520
HpySE526I	ACGT	3 cut(s)	429, 459, 468
Hsp92I	GRCGYC	2 cut(s)	226, 324
HspAI	GCGC	4 cut(s)	226, 418, 420, 518
KasI	GGCGCC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	178, 232, 300, 400
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	4 cut(s)	214, 292, 390, 543
Lsp1109I	GCAGC	4 cut(s)	204, 322, 397, 540
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	3 cut(s)	429, 459, 468
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	4 cut(s)	180, 234, 302, 402
MboI	GATC	4 cut(s)	178, 232, 300, 400
MboII	GAAGA	6 cut(s)	57, 65, 181, 287, 369, 540
MhlI	GDGCHC	3 cut(s)	8, 444, 548
MluCI	AATT	5 cut(s)	24, 80, 164, 633, 641
Mly113I	GGCGCC	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	612, 655
MspI	CCGG	5 cut(s)	8, 41, 318, 494, 541
MspR9I	CCNGG	2 cut(s)	8, 388
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	2 cut(s)	201, 420
MwoI	GCNNNNNNNGC	6 cut(s)	223, 332, 419, 443, 494, 520
NarI	GGCGCC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	4 cut(s)	178, 232, 300, 400
NlaIV	GGNNCC	2 cut(s)	227, 492
NmeAIII	GCCGAG	3 cut(s)	246, 379, 463
NmuCI	GTSAC	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	551
PauI	GCGCGC	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	3 cut(s)	435, 450, 465
PfoI	TCCNGGA	1 cut(s)	386
PkrI	GCNGC	5 cut(s)	219, 312, 412, 522, 530
PleI	GAGTC	1 cut(s)	368
PluTI	GGCGCC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	368
Psp124BI	GAGCTC	2 cut(s)	444, 548
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	227, 492
PteI	GCGCGC	1 cut(s)	418
SacI	GAGCTC	2 cut(s)	444, 548
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	2 cut(s)	612, 655
SatI	GCNGC	5 cut(s)	218, 311, 411, 521, 529
Sau3AI	GATC	4 cut(s)	178, 232, 300, 400
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	8, 388
SduI	GDGCHC	3 cut(s)	8, 444, 548
SfoI	GGCGCC	1 cut(s)	227
SfuI	TTCGAA	1 cut(s)	551
Sse9I	AATT	5 cut(s)	24, 80, 164, 633, 641
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	4 cut(s)	265, 483, 488, 521
SspDI	GGCGCC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	2 cut(s)	444, 548
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	6, 386
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	3 cut(s)	432, 462, 471
TaqI	TCGA	3 cut(s)	372, 403, 551
TasI	AATT	5 cut(s)	24, 80, 164, 633, 641
TauI	GCSGC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	612, 655
Tru9I	TTAA	2 cut(s)	612, 655
TscAI	CASTG	3 cut(s)	144, 563, 589
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	4 cut(s)	217, 310, 410, 528
Tsp45I	GTSAC	1 cut(s)	616
TspRI	CASTG	3 cut(s)	144, 563, 589
XapI	RAATTY	3 cut(s)	80, 164, 641
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.