MD13G1187500.v1.1

carboxylic ester hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000306
Physical Location & Seq
Reverse (-)
15962533 .. 15963534
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1187500.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGGCTTCCATTACTAAAGAATTAACCTTTAAGTCCGTTCCTTTCATCAGAATCTTCGAAGATGGCACTGTGGAGCGCACTCCACTTCCATATCCTTCATATGTCCCGCCATCTCCTGATCAAGATCCAGAAACTGGTGTCTCCTCCAAAGACATCACCATCTCAGAAAACCCCAAAATCTCGGTTCGCGCTTTCCTCCCAAATCTCCCTCAAAATCATACCCAAAAGCTCCCCATCTTGGTTTATTTCCACGGTGGTGCCTTTTGCATGGAGTCTGCCTTCTCATTCCTTAACCAACGTTATCTCAACCTCTTGGTCTCAGAAGCCAAAGTTATAGCTGTCTCTGTTGAGTATAGACTTGCCCCAGAAAACCCACTTCCTACTGCTTATGAAGACTGCTGGGCCGCTCTTCAATGGGTTGCTTCTCACTCAAGCAACAAAGACTTGGACAGTAACAAAGAGCCATGGTTAGTCAGGTATGGAGATTTTGGTAGACTTTACATTGGTGGTGATAGTGCAGGTGGAAATATTACACATAACCTGGCTATGAAGGGAGGAGTTGAGAGCCTGTGTGGTGGTGTGAAAATTTTGGGGGCATTTTTGTCCTGTCCTTATTTTTGGGGTTCCAAGCCAATTGGGTCAGAGCCTAAAGGTGAAGAGTTTGAGAAATATCATCATTCTATAGCTTGGGACTTTGTTTATCCCTCAGCTCCTGGAGGGATTGATAATCCAATGGTGAATCCTGAGGGTGAGGGTGCACCGAGCCTTACTGGACTAGGGTGCTCTAAGGTGCTTGTGTGTGTTGCTGGAAAGGATGATTTGAGGGATCGAGGTGTTCAATATTATGATTTAGTGAAGGAAAGTGGGTGGAAAGGAGAATTGGAGCTGTTTGAAGTTGAAGGAGAGGACCATTGCTTTCATTTCTGGCTTATGATCGAGTCTAAGACTGAGACTGAGAATGTTAAGAAAGTGTTCAAACGCTTGGCTTCTTTTCTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

334

Amino Acids

36.96

Weight (kDa)

5.2

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 66 - 122 2.5e-07 Carboxylesterase family
BD-FAE PF20434 69 - 188 4.9e-12 BD-FAE
Abhydrolase_3 PF07859 80 - 307 9.7e-45 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 134
AccBSI CCGCTC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 493
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 107, 405
AclI AACGTT 1 cut(s) 298
AclWI GGATC 2 cut(s) 119, 834
AcsI RAATTY 1 cut(s) 585
AfiI CCNNNNNNNGG 2 cut(s) 134, 238
AgsI TTSAA 5 cut(s) 413, 839, 893, 899, 976
AjnI CCWGG 2 cut(s) 540, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 5 cut(s) 229, 338, 686, 710, 886
AluI AGCT 5 cut(s) 229, 338, 686, 710, 886
Alw21I GWGCWC 2 cut(s) 760, 785
Alw26I GTCTC 4 cut(s) 145, 322, 346, 944
Alw44I GTGCAC 1 cut(s) 756
AlwI GGATC 2 cut(s) 119, 834
AlwNI CAGNNNCTG 2 cut(s) 134, 713
AoxI GGCC 1 cut(s) 402
ApaLI GTGCAC 1 cut(s) 756
ApoI RAATTY 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 971
AspLEI GCGC 2 cut(s) 78, 191
AspS9I GGNCC 2 cut(s) 402, 907
AsuHPI GGTGA 5 cut(s) 148, 521, 665, 748, 761
AsuII TTCGAA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 907
AxyI CCTNAGG 1 cut(s) 744
BaeGI GKGCMC 1 cut(s) 760
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 760, 785
BbvCI CCTCAGC 1 cut(s) 706
BccI CCATC 4 cut(s) 56, 118, 167, 242
BciT130I CCWGG 2 cut(s) 542, 714
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 4 cut(s) 145, 322, 346, 944
BfaI CTAG 2 cut(s) 776, 1000
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 542, 714
Bme18I GGWCC 1 cut(s) 907
BmgT120I GGNCC 2 cut(s) 402, 907
BmiI GGNNCC 2 cut(s) 259, 625
BmrFI CCNGG 2 cut(s) 542, 714
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 415
BsaBI GATNNNNATC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 250, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 238
Bse1I ACTGG 2 cut(s) 139, 775
Bse21I CCTNAGG 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 910
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 2 cut(s) 542, 714
BseDI CCNNGG 2 cut(s) 250, 464
BseGI GGATG 1 cut(s) 820
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 134, 238
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 6 cut(s) 177, 333, 720, 735, 939, 945
BseNI ACTGG 2 cut(s) 139, 775
BseRI GAGGAG 2 cut(s) 133, 570
BseSI GKGCMC 1 cut(s) 760
BseYI CCCAGC 1 cut(s) 399
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 760, 785
BslFI GGGAC 2 cut(s) 89, 704
BslI CCNNNNNNNGG 2 cut(s) 134, 238
BsmAI GTCTC 4 cut(s) 145, 322, 346, 944
BsmFI GGGAC 2 cut(s) 89, 704
BsnI GGCC 1 cut(s) 404
Bso31I GGTCTC 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 760, 785
Bsp143I GATC 4 cut(s) 118, 124, 826, 933
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 2 cut(s) 107, 405
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 6 cut(s) 176, 332, 719, 736, 940, 946
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 259, 625
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 2 cut(s) 119, 834
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 910
BsrI ACTGG 2 cut(s) 139, 775
BssECI CCNNGG 2 cut(s) 250, 464
BssMI GATC 4 cut(s) 118, 124, 826, 933
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 542, 714
Bst4CI ACNGT 3 cut(s) 70, 254, 452
Bst6I CTCTTC 2 cut(s) 414, 651
BstBI TTCGAA 1 cut(s) 57
BstDEI CTNAG 8 cut(s) 163, 319, 706, 744, 786, 942, 948, 954
BstDSI CCRYGG 2 cut(s) 250, 464
BstF5I GGATG 1 cut(s) 820
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 78, 191
BstKTI GATC 4 cut(s) 121, 127, 829, 936
BstMAI GTCTC 4 cut(s) 145, 322, 346, 944
BstMBI GATC 4 cut(s) 118, 124, 826, 933
BstNI CCWGG 2 cut(s) 542, 714
BstSCI CCNGG 2 cut(s) 540, 712
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 760
BstUI CGCG 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 744
BsuRI GGCC 1 cut(s) 404
BtgI CCRYGG 2 cut(s) 250, 464
BtsCI GGATG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 509
CaiI CAGNNNCTG 2 cut(s) 134, 713
CfoI GCGC 2 cut(s) 78, 191
Cfr13I GGNCC 2 cut(s) 402, 907
CviAII CATG 2 cut(s) 268, 465
DdeI CTNAG 8 cut(s) 163, 319, 706, 744, 786, 942, 948, 954
DpnI GATC 4 cut(s) 120, 126, 828, 935
DpnII GATC 4 cut(s) 118, 124, 826, 933
Eam1104I CTCTTC 2 cut(s) 414, 651
EarI CTCTTC 2 cut(s) 414, 651
Eco130I CCWWGG 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 907
Eco81I CCTNAGG 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 540, 712
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 2 cut(s) 271, 468
FaqI GGGAC 2 cut(s) 89, 704
FatI CATG 2 cut(s) 267, 464
FauI CCCGC 1 cut(s) 114
FauNDI CATATG 1 cut(s) 100
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 1 cut(s) 827
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 2 cut(s) 776, 1000
GlaI GCGC 2 cut(s) 77, 190
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 403
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 1 cut(s) 404
HhaI GCGC 2 cut(s) 78, 191
Hin1II CATG 2 cut(s) 271, 468
Hin6I GCGC 2 cut(s) 76, 189
HinP1I GCGC 2 cut(s) 76, 189
HinfI GANTC 4 cut(s) 51, 272, 739, 938
HphI GGTGA 5 cut(s) 148, 521, 665, 748, 761
Hpy166II GTNNAC 2 cut(s) 494, 758
Hpy188I TCNGA 4 cut(s) 50, 166, 322, 643
Hpy188III TCNNGA 4 cut(s) 116, 122, 128, 743
Hpy8I GTNNAC 2 cut(s) 494, 758
HpyAV CCTTC 5 cut(s) 105, 289, 544, 850, 893
HpyCH4III ACNGT 3 cut(s) 70, 254, 452
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 267, 518, 758
HpyF3I CTNAG 8 cut(s) 163, 319, 706, 744, 786, 942, 948, 954
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 2 cut(s) 271, 468
HspAI GCGC 2 cut(s) 76, 189
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 118, 124, 826, 933
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 4 cut(s) 73, 234, 715, 883
MaeI CTAG 2 cut(s) 776, 1000
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 452
MalI GATC 4 cut(s) 120, 126, 828, 935
MbiI CCGCTC 1 cut(s) 407
MboI GATC 4 cut(s) 118, 124, 826, 933
MboII GAAGA 5 cut(s) 46, 71, 401, 404, 668
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 760, 785
MluCI AATT 4 cut(s) 20, 585, 633, 878
MlyI GAGTC 2 cut(s) 281, 947
MroXI GAANNNNTTC 1 cut(s) 971
MseI TTAA 4 cut(s) 23, 30, 291, 963
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 542, 714
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 2 cut(s) 542, 714
MvnI CGCG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 464
NdeI CATATG 1 cut(s) 100
NdeII GATC 4 cut(s) 118, 124, 826, 933
NlaIII CATG 2 cut(s) 271, 468
NlaIV GGNNCC 2 cut(s) 259, 625
NspV TTCGAA 1 cut(s) 57
OliI CACNNNNGTG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 971
PfeI GAWTC 2 cut(s) 51, 739
PflMI CCANNNNNTGG 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 712
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 2 cut(s) 280, 946
PpsI GAGTC 2 cut(s) 280, 946
Psp1406I AACGTT 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 540, 712
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 540, 712
PspN4I GGNNCC 2 cut(s) 259, 625
PspPI GGNCC 2 cut(s) 402, 907
PstNI CAGNNNCTG 2 cut(s) 134, 713
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 4 cut(s) 23, 30, 291, 963
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 4 cut(s) 118, 124, 826, 933
Sau96I GGNCC 2 cut(s) 402, 907
SchI GAGTC 2 cut(s) 281, 947
ScrFI CCNGG 2 cut(s) 542, 714
SduI GDGCHC 2 cut(s) 760, 785
SfcI CTRYAG 1 cut(s) 681
SfuI TTCGAA 1 cut(s) 57
SinI GGWCC 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 4 cut(s) 20, 585, 633, 878
SsiI CCGC 2 cut(s) 107, 405
SspI AATATT 2 cut(s) 529, 842
SspMI CTAG 2 cut(s) 776, 1000
StyD4I CCNGG 2 cut(s) 540, 712
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 3 cut(s) 70, 254, 452
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 57, 829, 936
TasI AATT 4 cut(s) 20, 585, 633, 878
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 2 cut(s) 51, 739
Tru1I TTAA 4 cut(s) 23, 30, 291, 963
Tru9I TTAA 4 cut(s) 23, 30, 291, 963
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 5 cut(s) 34, 87, 405, 563, 908
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 134
VneI GTGCAC 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 907
XapI RAATTY 1 cut(s) 585
XmiI GTMKAC 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 2 cut(s) 776, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.