Rw1G015270

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000306
Physical Location & Seq
Reverse (-)
34037707 .. 34038707
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015270.1

Sequence Viewer

Length: 852 bp
ATGGCTTCCACCGGCAAAGAAATAGCGTCAGAGCTCCTTCCTTTCATCAGAGTTTACAAAGATGGCACCGTCGAACGCCTCATGGGATCTCCCTATGTGTCCCCATCTCCACATGACCCAGAATACGGCGTCTGTTCCAAGGACATCACCATCTCTCACAACCCGAAAATCTCAGCTCGCCTTTTCTGCCCTCAAACCCTAAACCAACATGTCCCAAACCAAAAGCTTCCGGTTTTGGTCTACTTCCACGGCGGTGGTTTTTGCTTTGAATCTGCTTTCTCGTCTGATCACCACCGCTTCCTCAACCACTGCTGGGCTGCTCTTCAATGGGTCGCTTCGCATACTGAAAATGAAGAGCGTGTTAGTGCTATTAACAAAGAGCCATGGCTAGCCAGCTACGGCGATTTCGATAGAGTTTACATTGATGGTGACAGTACACTACCGGCCGGGACTGATAGCTTGAGTGTGAAAATCGTGGGGGCATTTATGTCCCACCCCTACCTTTTGAGTTCCAAGCCACTGGCGTGGGAGCCAAAAGGCGAAGAGTTCGAGAAGTATCTGCCTTGCCTGGTTTGGGGGTTTTTGAATCCGTCGGCTCCGGGAGGTCTTGATGATAATCCGATGGTTAACCCGGCAGGTTTGGGTGCTCCGAGCGTGGCTGGGCTTGGGTGCTCTAAGCTGCTTGTGCATAGAGGTGTTTGGTATTATAATTTGGTCATGGAGAGTGGGTGGAAAGGAGAAGTGGAGTTGTTTGAAGTCGAAGGAGAGGGACACGCTTTCCAGATTTTCAGTGTGGCCGAGACCCATAATGTTAAGAAAATCATCAACAAATTGGCTTCTTTTCTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

283

Amino Acids

31.27

Weight (kDa)

5.71

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 240
AciI CCGC 2 cut(s) 252, 295
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 2 cut(s) 444, 795
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 3 cut(s) 125, 313, 574
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 4 cut(s) 269, 326, 586, 755
AjnI CCWGG 1 cut(s) 567
AleI CACNNNNGTG 2 cut(s) 252, 523
AluBI AGCT 6 cut(s) 34, 176, 226, 396, 459, 679
AluI AGCT 6 cut(s) 34, 176, 226, 396, 459, 679
Alw21I GWGCWC 3 cut(s) 36, 649, 674
Alw26I GTCTC 1 cut(s) 794
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 444, 795
ApeKI GCWGC 2 cut(s) 317, 679
AsuC2I CCSGG 3 cut(s) 448, 600, 632
AsuHPI GGTGA 3 cut(s) 139, 281, 440
AsuNHI GCTAGC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 3 cut(s) 36, 649, 674
BbvI GCAGC 2 cut(s) 304, 666
BccI CCATC 5 cut(s) 56, 112, 158, 419, 616
BceAI ACGGC 3 cut(s) 142, 265, 415
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 3 cut(s) 448, 600, 632
BcoDI GTCTC 1 cut(s) 794
BfaI CTAG 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 626
BisI GCNGC 2 cut(s) 318, 680
BlsI GCNGC 2 cut(s) 319, 681
Bme1390I CCNGG 4 cut(s) 448, 569, 600, 632
BmiI GGNNCC 3 cut(s) 67, 531, 597
BmrFI CCNGG 4 cut(s) 448, 569, 600, 632
BmtI GCTAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 3 cut(s) 448, 600, 632
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 3 cut(s) 138, 247, 383
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 313, 574
Bse118I RCCGGY 2 cut(s) 11, 442
Bse1I ACTGG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 3 cut(s) 138, 247, 383
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 3 cut(s) 125, 313, 574
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 525
BseX3I CGGCCG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 304, 666
BseYI CCCAGC 2 cut(s) 312, 659
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 446, 797
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 3 cut(s) 36, 649, 674
BsiSI CCGG 6 cut(s) 12, 230, 443, 447, 599, 632
BslFI GGGAC 5 cut(s) 85, 197, 463, 475, 783
BslI CCNNNNNNNGG 3 cut(s) 125, 313, 574
BsmAI GTCTC 1 cut(s) 794
BsmFI GGGAC 5 cut(s) 85, 197, 463, 475, 783
BsnI GGCC 2 cut(s) 446, 797
Bso31I GGTCTC 1 cut(s) 794
Bsp1286I GDGCHC 3 cut(s) 36, 649, 674
Bsp143I GATC 2 cut(s) 86, 286
Bsp19I CCATGG 1 cut(s) 383
BspACI CCGC 2 cut(s) 252, 295
BspANI GGCC 2 cut(s) 446, 797
BspCNI CTCAG 1 cut(s) 185
BspLI GGNNCC 3 cut(s) 67, 531, 597
BspMI ACCTGC 1 cut(s) 626
BspOI GCTAGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 2 cut(s) 327, 348
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 794
BsrFI RCCGGY 2 cut(s) 11, 442
BsrI ACTGG 1 cut(s) 525
BssAI RCCGGY 2 cut(s) 11, 442
BssECI CCNNGG 3 cut(s) 138, 247, 383
BssMI GATC 2 cut(s) 86, 286
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 138, 383
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 70, 434
Bst6I CTCTTC 3 cut(s) 327, 348, 537
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 178, 390, 394
BstDEI CTNAG 2 cut(s) 172, 675
BstDSI CCRYGG 2 cut(s) 247, 383
BstKTI GATC 2 cut(s) 89, 289
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 2 cut(s) 86, 286
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 2 cut(s) 186, 685
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 446, 567, 598, 630
BstV1I GCAGC 2 cut(s) 304, 666
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 3 cut(s) 254, 520, 525
BstYI RGATCY 1 cut(s) 86
BstZI CGGCCG 1 cut(s) 444
BsuRI GGCC 2 cut(s) 446, 797
BtgI CCRYGG 2 cut(s) 247, 383
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 3 cut(s) 307, 518, 796
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 3 cut(s) 178, 390, 394
Cfr10I RCCGGY 2 cut(s) 11, 442
CseI GACGC 2 cut(s) 15, 118
Csp6I GTAC 1 cut(s) 435
CviAII CATG 5 cut(s) 82, 113, 209, 384, 718
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 2 cut(s) 172, 675
DpnI GATC 2 cut(s) 88, 288
DpnII GATC 2 cut(s) 86, 286
EaeI YGGCCR 2 cut(s) 444, 795
EagI CGGCCG 1 cut(s) 444
Eam1104I CTCTTC 3 cut(s) 327, 348, 537
EarI CTCTTC 3 cut(s) 327, 348, 537
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 138, 383
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 794
Eco52I CGGCCG 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 138, 383
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 138, 383
FaeI CATG 5 cut(s) 85, 116, 212, 387, 721
FaqI GGGAC 5 cut(s) 85, 197, 463, 475, 783
FatI CATG 5 cut(s) 81, 112, 208, 383, 717
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 318, 680
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 318, 680
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 318, 680
GsaI CCCAGC 2 cut(s) 316, 663
HaeIII GGCC 2 cut(s) 446, 797
HapII CCGG 6 cut(s) 12, 230, 443, 447, 599, 632
HgaI GACGC 2 cut(s) 15, 118
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 5 cut(s) 85, 116, 212, 387, 721
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 269, 586
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 6 cut(s) 12, 230, 443, 447, 599, 632
HphI GGTGA 3 cut(s) 139, 281, 440
Hpy166II GTNNAC 5 cut(s) 55, 241, 418, 437, 628
Hpy188I TCNGA 5 cut(s) 31, 50, 286, 621, 651
Hpy188III TCNNGA 3 cut(s) 550, 608, 781
Hpy8I GTNNAC 5 cut(s) 55, 241, 418, 437, 628
Hpy99I CGWCG 2 cut(s) 74, 595
HpyAV CCTTC 2 cut(s) 47, 755
HpyCH4III ACNGT 2 cut(s) 70, 434
HpyCH4V TGCA 1 cut(s) 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 685
HpyF3I CTNAG 2 cut(s) 172, 675
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 5 cut(s) 85, 116, 212, 387, 721
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 2 cut(s) 86, 286
LguI GCTCTTC 2 cut(s) 327, 348
LmnI GCTCC 4 cut(s) 39, 529, 601, 652
Lsp1109I GCAGC 2 cut(s) 304, 666
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 88, 288
MboI GATC 2 cut(s) 86, 286
MboII GAAGA 3 cut(s) 314, 365, 554
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 3 cut(s) 36, 649, 674
MluCI AATT 2 cut(s) 709, 830
MnlI CCTC 6 cut(s) 89, 201, 311, 596, 686, 760
MseI TTAA 3 cut(s) 372, 627, 813
MslI CAYNNNNRTG 3 cut(s) 252, 523, 693
MspI CCGG 6 cut(s) 12, 230, 443, 447, 599, 632
MspR9I CCNGG 4 cut(s) 448, 569, 600, 632
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 186, 685
NciI CCSGG 3 cut(s) 448, 600, 632
NcoI CCATGG 1 cut(s) 383
NdeII GATC 2 cut(s) 86, 286
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 5 cut(s) 85, 116, 212, 387, 721
NlaIV GGNNCC 3 cut(s) 67, 531, 597
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 212
OliI CACNNNNGTG 2 cut(s) 252, 523
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 2 cut(s) 327, 348
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PfeI GAWTC 2 cut(s) 269, 586
PfoI TCCNGGA 1 cut(s) 598
PkrI GCNGC 2 cut(s) 319, 681
PscI ACATGT 1 cut(s) 208
PsiI TTATAA 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 567
PspFI CCCAGC 2 cut(s) 312, 659
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 67, 531, 597
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 3 cut(s) 252, 523, 693
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 327, 348
SaqAI TTAA 3 cut(s) 372, 627, 813
SatI GCNGC 2 cut(s) 318, 680
Sau3AI GATC 2 cut(s) 86, 286
ScrFI CCNGG 4 cut(s) 448, 569, 600, 632
SduI GDGCHC 3 cut(s) 36, 649, 674
SmiMI CAYNNNNRTG 3 cut(s) 252, 523, 693
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 2 cut(s) 709, 830
SsiI CCGC 2 cut(s) 252, 295
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 4 cut(s) 446, 567, 598, 630
StyI CCWWGG 2 cut(s) 138, 383
TaaI ACNGT 2 cut(s) 70, 434
TaqI TCGA 4 cut(s) 72, 408, 549, 759
TasI AATT 2 cut(s) 709, 830
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 2 cut(s) 269, 586
Tru1I TTAA 3 cut(s) 372, 627, 813
Tru9I TTAA 3 cut(s) 372, 627, 813
TscAI CASTG 3 cut(s) 314, 525, 796
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 317, 679
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 34, 366
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 3 cut(s) 314, 525, 796
XceI RCATGY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.