Prupe.1G155100_v2.0.a1

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000306
Physical Location & Seq
Reverse (-)
12260142 .. 12261131
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G155100.1

Sequence Viewer

Length: 981 bp
ATGGCTTCCATCACCAAAGAATTAGCCTTCAAGGGCTTTCCTTTCATCAGAATCTACCAAGATGGAAAAGTTGAACGCCTCATAGAGTCTCCACATGTGCCCCCATCTGATCAAGACCCAGAAACTGGTGTCTCCTCCAAAGACATCACAATCTCGCACAACCCCAGCATCTCAGCTCGCCTTTACCTCCCAAATCTCCCTCAAAACCAAACCCAAAAGCTCCCCATCTTGGTTTACTTCCATGGTGGAGCATTTTGCATTGAGTCAGCCTTCTCACTCCATGCCCATTGTTTTCTCAACCGCTTGGTCTCAGAAGCCCAAGTTGCAGCTGTCTCTGTTGAGTACAGGCTTGCCCCAGAAAACCCACTCCCTCTTGCTTATGAAGATTCCTGGGCTGCTCTTCAATGGGTTGCTTCTCACTCAAACAACCAAGAATTAGATGGCAAAAAAGACCCATGGCTAGCCAAATTTGGAGATTTTGACAGATTGTACATTGGTGGTGATAGTGCAGGTGGCAATATTGCACATAATTTGGCTATGAAGGCAGGACTGGAGAGATTGTGTGGGGGTGTGAAAGTTTTGGGTGCATTTCTGTCCCACCCTTATTTTTGGGGATCCAAGCCAATTCGGTCAGAGCCTAAAGGAGAAGACTTTGAGAAGACTCTGGAGTATAAAGCTTGGGACGTTGTTTATCCATCAGCTCCTGGAGGGATTGATAATCCAATGGTGAATCCAGCGGGTGAGGGTGCACCGAGCCTGGCTGGACTCGGGTGCTCTAAGCTGCTTATGTGTGTTGCAGGCAAGGATCAGCTGAGGGATCGAGGGGTTTGGTATTGTGATTTGGTGAGGGAAAGTGGGTGGAAAGGAGAAGTGGAGCTGTTTGAAGTGGAAGGAGAGGAACATTGCTTTCATCTCGGGAGTGAGACTGAGACAGAGAATGTTAAGAAACTGCTCAAACGCTTGGCTTCTTTTCTTGTCTAG

Protein Analysis

327

Amino Acids

35.95

Weight (kDa)

5.52

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000306)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19330
fragaria_vesca FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_2g23530 FvH4_4g15010 FvH4_4g15020 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040 FvH4_4g15040
malus_domestica MD03G1264200.v1.1 MD03G1264700.v1.1 MD11G1284800.v1.1 MD13G1187400.v1.1 MD13G1187500.v1.1 MD13G1187900.v1.1 MD13G1188000.v1.1 MD16G1188100.v1.1 MD16G1188500.v1.1 MD16G1188600.v1.1
prunus_persica Prupe.1G154900_v2.0.a1 Prupe.1G155100_v2.0.a1 Prupe.1G155200_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.1G155300_v2.0.a1 Prupe.8G240700_v2.0.a1
pyrus_communis pycom03g21190 pycom11g25240 pycom11g25250 pycom13g16210 pycom13g16230 pycom13g16240 pycom16g15820
rosa_chinensis RchiOBHm_Chr1g0343661 RchiOBHm_Chr4g0416821 RchiOBHm_Chr4g0416831 RchiOBHm_Chr4g0416841 RchiOBHm_Chr4g0416871 RchiOBHm_Chr4g0416951 RchiOBHm_Chr4g0416961 RchiOBHm_Chr6g0291001
rosa_laevigata RLG00000007939 RLG00000007940 RLG00000007944 RLG00000007945 RLG00000007946 RLG00000007954 RLG00000012156 RLG00000028955
rosa_multiflora Rmu_co8241865.1_g000001 Rmu_sc0000021.1_g000004 Rmu_sc0000663.1_g000003 Rmu_sc0000663.1_g000009 Rmu_sc0000663.1_g000012 Rmu_sc0000663.1_g000013 Rmu_sc0000663.1_g000021 Rmu_sc0000663.1_g000029 Rmu_sc0014328.1_g000002 Rmu_sc0014328.1_g000003 Rmu_sc0020688.1_g000001 Rmu_sc0024683.1_g000001 Rmu_sc0024683.1_g000002 Rmu_sc0033477.1_g000001 Rmu_sc0035872.1_g000001 Rmu_ssc0000010.1_g000006 Rmu_ssc0000010.1_g000008 Rmu_ssc0000010.1_g000011
rosa_roxburghii Rroxscaffold_4G00310390 Rroxscaffold_5G00360700 Rroxscaffold_5G00360710 Rroxscaffold_5G00360720 Rroxscaffold_5G00360750 Rroxscaffold_5G00360800 Rroxscaffold_5G00360820 Rroxscaffold_7G00176470
rosa_rugosa Rorug04G0145200 Rorug04G0145300 Rorug04G0145400 Rorug04G0145400 Rorug04G0145600.1 Rorug04G0145700.1 Rorug04G0148500 Rorug06G0217000
rosa_samantha Rh2BG232000 Rh4AG207900 Rh4BG205000 Rh4BG205100 Rh4CG218700 Rh4DG134800 Rh4DG204800 Rh4DG204900 Rh4DG205000 Rh4DG205100 Rh4DG205200 Rh4DG205300 Rh4DG205400 Rh4DG205500 Rh5BG434500 Rh5CG457700 Rh6AG326800 Rh6BG334300 Rh6CG340500 Rh6DG327800
rosa_wichuraiana Rw1G015270 Rw4G017570 Rw4G017580 Rw4G017590 Rw4G017600 Rw4G017610 Rw4G017620 Rw4G017630 Rw4G017640 Rw6G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 500
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 2 cut(s) 301, 737
AclWI GGATC 4 cut(s) 609, 622, 813, 825
AcsI RAATTY 1 cut(s) 467
AfaI GTAC 2 cut(s) 344, 491
AfiI CCNNNNNNNGG 2 cut(s) 125, 229
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 4 cut(s) 31, 74, 404, 884
AjnI CCWGG 3 cut(s) 389, 703, 756
AluBI AGCT 8 cut(s) 176, 220, 329, 677, 701, 781, 811, 877
AluI AGCT 8 cut(s) 176, 220, 329, 677, 701, 781, 811, 877
Alw21I GWGCWC 2 cut(s) 751, 776
Alw26I GTCTC 6 cut(s) 93, 136, 313, 337, 917, 923
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 4 cut(s) 609, 622, 813, 825
AlwNI CAGNNNCTG 2 cut(s) 125, 704
Ama87I CYCGRG 2 cut(s) 767, 914
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 3 cut(s) 326, 395, 781
ApoI RAATTY 1 cut(s) 467
AsuHPI GGTGA 5 cut(s) 4, 512, 739, 752, 856
AsuNHI GCTAGC 1 cut(s) 460
AvaI CYCGRG 2 cut(s) 767, 914
BaeGI GKGCMC 2 cut(s) 102, 751
BamHI GGATCC 1 cut(s) 614
BbsI GAAGAC 2 cut(s) 654, 665
Bbv12I GWGCWC 2 cut(s) 751, 776
BbvCI CCTCAGC 1 cut(s) 812
BbvI GCAGC 3 cut(s) 338, 382, 768
BccI CCATC 6 cut(s) 17, 56, 112, 233, 434, 703
BciT130I CCWGG 3 cut(s) 391, 705, 758
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 6 cut(s) 93, 136, 313, 337, 917, 923
BfaI CTAG 2 cut(s) 461, 979
BfuAI ACCTGC 1 cut(s) 500
BisI GCNGC 3 cut(s) 327, 396, 782
BlsI GCNGC 3 cut(s) 328, 397, 783
Bme1390I CCNGG 3 cut(s) 391, 705, 758
BmeT110I CYCGRG 2 cut(s) 767, 914
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 3 cut(s) 391, 705, 758
BmsI GCATC 1 cut(s) 177
BmtI GCTAGC 1 cut(s) 464
BpiI GAAGAC 2 cut(s) 654, 665
BpmI CTGGAG 3 cut(s) 572, 686, 726
Bpu10I CCTNAGC 1 cut(s) 812
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 3 cut(s) 241, 390, 455
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 229
Bse1I ACTGG 2 cut(s) 130, 555
Bse3DI GCAATG 1 cut(s) 901
BseBI CCWGG 3 cut(s) 391, 705, 758
BseDI CCNNGG 3 cut(s) 241, 390, 455
BseLI CCNNNNNNNGG 2 cut(s) 125, 229
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 4 cut(s) 186, 324, 803, 918
BseNI ACTGG 2 cut(s) 130, 555
BseRI GAGGAG 1 cut(s) 124
BseSI GKGCMC 2 cut(s) 102, 751
BseXI GCAGC 3 cut(s) 338, 382, 768
BseYI CCCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 751, 776
BsiHKCI CYCGRG 2 cut(s) 767, 914
BslFI GGGAC 2 cut(s) 580, 695
BslI CCNNNNNNNGG 2 cut(s) 125, 229
BsmAI GTCTC 6 cut(s) 93, 136, 313, 337, 917, 923
BsmFI GGGAC 2 cut(s) 580, 695
Bso31I GGTCTC 1 cut(s) 313
BsoBI CYCGRG 2 cut(s) 767, 914
Bsp1286I GDGCHC 3 cut(s) 102, 751, 776
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 4 cut(s) 109, 614, 805, 817
Bsp19I CCATGG 2 cut(s) 241, 455
BspACI CCGC 2 cut(s) 301, 737
BspCNI CTCAG 4 cut(s) 185, 323, 804, 919
BspLI GGNNCC 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 500
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 4 cut(s) 609, 622, 813, 825
BspQI GCTCTTC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 901
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 2 cut(s) 130, 555
BssECI CCNNGG 3 cut(s) 241, 390, 455
BssMI GATC 4 cut(s) 109, 614, 805, 817
BssT1I CCWWGG 2 cut(s) 241, 455
Bst2UI CCWGG 3 cut(s) 391, 705, 758
Bst6I CTCTTC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 4 cut(s) 178, 351, 462, 799
BstDEI CTNAG 5 cut(s) 172, 310, 777, 812, 927
BstDSI CCRYGG 2 cut(s) 241, 455
BstKTI GATC 4 cut(s) 112, 617, 808, 820
BstMAI GTCTC 6 cut(s) 93, 136, 313, 337, 917, 923
BstMBI GATC 4 cut(s) 109, 614, 805, 817
BstMWI GCNNNNNNNGC 2 cut(s) 323, 542
BstNI CCWGG 3 cut(s) 391, 705, 758
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 389, 703, 756
BstSLI GKGCMC 2 cut(s) 102, 751
BstV1I GCAGC 3 cut(s) 338, 382, 768
BstV2I GAAGAC 2 cut(s) 654, 665
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BtgI CCRYGG 2 cut(s) 241, 455
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 4 cut(s) 178, 351, 462, 799
CaiI CAGNNNCTG 2 cut(s) 125, 704
Csp6I GTAC 2 cut(s) 343, 490
CviAII CATG 4 cut(s) 95, 242, 281, 456
CviQI GTAC 2 cut(s) 343, 490
DdeI CTNAG 5 cut(s) 172, 310, 777, 812, 927
DpnI GATC 4 cut(s) 111, 616, 807, 819
DpnII GATC 4 cut(s) 109, 614, 805, 817
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 241, 455
Eco31I GGTCTC 1 cut(s) 313
Eco88I CYCGRG 2 cut(s) 767, 914
EcoRII CCWGG 3 cut(s) 389, 703, 756
EcoT14I CCWWGG 2 cut(s) 241, 455
ErhI CCWWGG 2 cut(s) 241, 455
FaeI CATG 4 cut(s) 98, 245, 284, 459
FaqI GGGAC 2 cut(s) 580, 695
FatI CATG 4 cut(s) 94, 241, 280, 455
FauI CCCGC 1 cut(s) 730
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 327, 396, 782
Fsp4HI GCNGC 3 cut(s) 327, 396, 782
FspBI CTAG 2 cut(s) 461, 979
GluI GCNGC 3 cut(s) 327, 396, 782
GsaI CCCAGC 1 cut(s) 168
GsuI CTGGAG 3 cut(s) 572, 686, 726
Hin1II CATG 4 cut(s) 98, 245, 284, 459
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 7 cut(s) 51, 86, 263, 386, 661, 730, 765
HphI GGTGA 5 cut(s) 4, 512, 739, 752, 856
Hpy166II GTNNAC 2 cut(s) 235, 749
Hpy188I TCNGA 4 cut(s) 50, 109, 313, 634
Hpy188III TCNNGA 3 cut(s) 113, 665, 916
Hpy8I GTNNAC 2 cut(s) 235, 749
HpyAV CCTTC 4 cut(s) 37, 280, 535, 884
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 7 cut(s) 258, 326, 509, 524, 587, 749, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 542
HpyF3I CTNAG 5 cut(s) 172, 310, 777, 812, 927
HpySE526I ACGT 1 cut(s) 684
Hsp92II CATG 4 cut(s) 98, 245, 284, 459
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 109, 614, 805, 817
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 4 cut(s) 225, 248, 706, 874
Lsp1109I GCAGC 3 cut(s) 338, 382, 768
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 461, 979
MaeII ACGT 1 cut(s) 684
MalI GATC 4 cut(s) 111, 616, 807, 819
MboI GATC 4 cut(s) 109, 614, 805, 817
MboII GAAGA 4 cut(s) 392, 395, 659, 670
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 3 cut(s) 102, 751, 776
MluCI AATT 5 cut(s) 20, 434, 467, 529, 624
MlyI GAGTC 4 cut(s) 95, 272, 655, 759
MseI TTAA 1 cut(s) 942
MspA1I CMGCKG 3 cut(s) 329, 737, 811
MspR9I CCNGG 3 cut(s) 391, 705, 758
MvaI CCWGG 3 cut(s) 391, 705, 758
MwoI GCNNNNNNNGC 2 cut(s) 323, 542
NcoI CCATGG 2 cut(s) 241, 455
NdeII GATC 4 cut(s) 109, 614, 805, 817
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 4 cut(s) 98, 245, 284, 459
NlaIV GGNNCC 1 cut(s) 616
NspI RCATGY 1 cut(s) 98
PaqCI CACCTGC 1 cut(s) 500
PciI ACATGT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 405
PfeI GAWTC 3 cut(s) 51, 386, 730
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 703
PkrI GCNGC 3 cut(s) 328, 397, 783
PleI GAGTC 4 cut(s) 94, 271, 655, 759
PpsI GAGTC 4 cut(s) 94, 271, 655, 759
PscI ACATGT 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 389, 703, 756
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 3 cut(s) 389, 703, 756
PspN4I GGNNCC 1 cut(s) 616
PstNI CAGNNNCTG 2 cut(s) 125, 704
PsuI RGATCY 1 cut(s) 614
PvuII CAGCTG 2 cut(s) 329, 811
RsaI GTAC 2 cut(s) 344, 491
RsaNI GTAC 2 cut(s) 343, 490
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 942
SatI GCNGC 3 cut(s) 327, 396, 782
Sau3AI GATC 4 cut(s) 109, 614, 805, 817
SchI GAGTC 4 cut(s) 95, 272, 655, 759
ScrFI CCNGG 3 cut(s) 391, 705, 758
SduI GDGCHC 3 cut(s) 102, 751, 776
SfaNI GCATC 1 cut(s) 177
Sse9I AATT 5 cut(s) 20, 434, 467, 529, 624
SsiI CCGC 2 cut(s) 301, 737
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 461, 979
StyD4I CCNGG 3 cut(s) 389, 703, 756
StyI CCWWGG 2 cut(s) 241, 455
TaiI ACGT 1 cut(s) 687
TaqI TCGA 1 cut(s) 820
TaqII GACCGA 1 cut(s) 618
TasI AATT 5 cut(s) 20, 434, 467, 529, 624
TatI WGTACW 2 cut(s) 342, 489
TfiI GAWTC 3 cut(s) 51, 386, 730
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TseI GCWGC 3 cut(s) 326, 395, 781
TspDTI ATGAA 4 cut(s) 34, 396, 554, 899
Van91I CCANNNNNTGG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 747
XapI RAATTY 1 cut(s) 467
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 2 cut(s) 461, 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.