AT4G03150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015386
Physical Location & Seq
Reverse (-)
1393614 .. 1394583
970 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03150.1

Sequence Viewer

Length: 558 bp
ATGAGTTCGTGGGTTTGCTCTTCCGTAACTCGAAACGTCGTAAAGTCACATCCTTTATCATTAACCAAACACCTTGATTTCCCGGCGACGATTCGGAGAAGATCAGTCAGCTTTCCGGCGACGATTCGGAGAAGATCAGTCAGCTTTCCGATAACATCTGCGCCGAAATTTCCGTCTTTGAAACTCCAAAAGTCTCAATCGTCGATCCATGAAGGAGAAGAAGACTCAGAATCAGCCGTACAAGCCCTCACGATTCCAGAAGAGTGGTTGCTCCCTTCTAGAGCCATTGAGGAATCTGAATGGTTGAGAGTAACTTTGCACAAATGGTTGGATGATGAGTATTGCCCTGAGCCAACCAATGTGGAGATCAGTGAAGTAGCTGCAAAGTCTTACTATAGTTCACTGCTAGAGAAAGAAAGTGACATGGGAGAGATTTTGTTGAAGATGGCTCAAGATTTAACTTCCATTTCATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGCTAATGCAGCTATAAATTTGATTGTTGACAGAATAGAAACCGGCCTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.78

Weight (kDa)

5.41

Isoelectric Point (pI)

77.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 504
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 2 cut(s) 167, 520
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 181, 442
AluBI AGCT 6 cut(s) 111, 144, 380, 483, 494, 515
AluI AGCT 6 cut(s) 111, 144, 380, 483, 494, 515
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 380, 512
ApoI RAATTY 2 cut(s) 167, 520
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 367, 524
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 221
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 4 cut(s) 279, 407, 551, 556
BfmI CTRYAG 1 cut(s) 394
BisI GCNGC 2 cut(s) 381, 513
BlsI GCNGC 2 cut(s) 382, 514
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 3 cut(s) 49, 337, 500
BseMII CTCAG 2 cut(s) 240, 339
BseXI GCAGC 2 cut(s) 367, 524
BshFI GGCC 1 cut(s) 549
BsiSI CCGG 3 cut(s) 83, 116, 546
BsmAI GTCTC 1 cut(s) 198
BsnI GGCC 1 cut(s) 549
Bsp143I GATC 4 cut(s) 101, 134, 204, 366
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 504
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 2 cut(s) 239, 340
BspPI GGATC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 545
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 4 cut(s) 101, 134, 204, 366
BssT1I CCWWGG 1 cut(s) 487
Bst6I CTCTTC 2 cut(s) 25, 255
BstDEI CTNAG 2 cut(s) 226, 348
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 3 cut(s) 49, 337, 500
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 4 cut(s) 104, 137, 207, 369
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 101, 134, 204, 366
BstMWI GCNNNNNNNGC 2 cut(s) 242, 512
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 367, 524
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 3 cut(s) 49, 337, 500
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 376, 401
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 545
Csp6I GTAC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 3 cut(s) 209, 424, 488
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 226, 348
DpnI GATC 4 cut(s) 103, 136, 206, 368
DpnII GATC 4 cut(s) 101, 134, 204, 366
Eam1104I CTCTTC 2 cut(s) 25, 255
EarI CTCTTC 2 cut(s) 25, 255
Eco130I CCWWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 3 cut(s) 212, 427, 491
FaiI YATR 6 cut(s) 210, 396, 425, 472, 489, 518
FatI CATG 3 cut(s) 208, 423, 487
Fnu4HI GCNGC 2 cut(s) 381, 513
FokI GGATG 3 cut(s) 36, 344, 487
Fsp4HI GCNGC 2 cut(s) 381, 513
FspBI CTAG 4 cut(s) 279, 407, 551, 556
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 381, 513
HaeIII GGCC 1 cut(s) 549
HapII CCGG 3 cut(s) 83, 116, 546
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 212, 427, 491
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 6 cut(s) 91, 124, 224, 230, 253, 293
HpaII CCGG 3 cut(s) 83, 116, 546
Hpy166II GTNNAC 2 cut(s) 401, 532
Hpy188I TCNGA 5 cut(s) 96, 129, 150, 229, 298
Hpy188III TCNNGA 4 cut(s) 250, 257, 279, 452
Hpy8I GTNNAC 2 cut(s) 401, 532
Hpy99I CGWCG 4 cut(s) 41, 91, 124, 205
HpyAV CCTTC 2 cut(s) 206, 285
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 319, 383, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 512
HpyF3I CTNAG 2 cut(s) 226, 348
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 212, 427, 491
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 4 cut(s) 101, 134, 204, 366
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 276, 491
LpnPI CCDG 4 cut(s) 96, 129, 270, 360
Lsp1109I GCAGC 2 cut(s) 367, 524
MaeI CTAG 4 cut(s) 279, 407, 551, 556
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 25, 45, 310, 419
MalI GATC 4 cut(s) 103, 136, 206, 368
MboI GATC 4 cut(s) 101, 134, 204, 366
MboII GAAGA 7 cut(s) 12, 111, 144, 230, 233, 272, 454
MluCI AATT 2 cut(s) 167, 520
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 2 cut(s) 257, 283
MseI TTAA 2 cut(s) 62, 458
MspI CCGG 3 cut(s) 83, 116, 546
MspR9I CCNGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 242, 512
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 487
NdeII GATC 4 cut(s) 101, 134, 204, 366
NlaIII CATG 3 cut(s) 212, 427, 491
NmuCI GTSAC 2 cut(s) 45, 419
PciSI GCTCTTC 1 cut(s) 25
PfeI GAWTC 5 cut(s) 91, 124, 230, 253, 293
PkrI GCNGC 2 cut(s) 382, 514
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 62, 458
SatI GCNGC 2 cut(s) 381, 513
Sau3AI GATC 4 cut(s) 101, 134, 204, 366
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 83
SetI ASST 8 cut(s) 39, 75, 113, 146, 382, 485, 496, 517
SfcI CTRYAG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 450
SmoI CTYRAG 1 cut(s) 450
Sse9I AATT 2 cut(s) 167, 520
SsiI CCGC 1 cut(s) 504
SspMI CTAG 4 cut(s) 279, 407, 551, 556
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 487
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 31, 203
TasI AATT 2 cut(s) 167, 520
TfiI GAWTC 5 cut(s) 91, 124, 230, 253, 293
Tru1I TTAA 2 cut(s) 62, 458
Tru9I TTAA 2 cut(s) 62, 458
TscAI CASTG 2 cut(s) 376, 408
TseFI GTSAC 2 cut(s) 45, 419
TseI GCWGC 2 cut(s) 380, 512
Tsp45I GTSAC 2 cut(s) 45, 419
TspDTI ATGAA 2 cut(s) 225, 459
TspGWI ACGGA 2 cut(s) 13, 162
TspRI CASTG 2 cut(s) 376, 408
XapI RAATTY 2 cut(s) 167, 520
XbaI TCTAGA 1 cut(s) 278
XspI CTAG 4 cut(s) 279, 407, 551, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.