Prupe.8G252200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015386
Physical Location & Seq
Reverse (-)
21640390 .. 21641054
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G252200.1

Sequence Viewer

Length: 576 bp
ATGAAATCTTTGTATCCAACTAGACCAATTGCAGCCGTCCCAAAGTTTAATTCTACCTCTTACACCAAAATTTCTGCTATCACCAATGTTGCTACGCCTACGCTCAATTTCTGGGTTTCATCACCACATCCAATTCGCTCACTGAATTATTTTCCCAAGCCACACCCACACACTGCTCTAAGATCTCAGTCTCCTTCAAATCCACAAAGCAACAAGCAAGAGAAAGATGAAGTGGAAGAAGAAGAAGACCCAGATGCCCAAGTCCAAGACCTTGTGGTCCCAGAGCATTGGTTGGTCCCTTCCAAGGCCTTGGAGGAATCAGAGTGGCTAAGGGTTACTTTGCATAAGTGGTTGGATGATGAGTATTGCCCAGAAGCCACCAATGTTGAAATCAGCAAGATTGCTGCTCAATCATACTACAAATCTTTGCTGGGAAAACAGACTGACTTGGGTGAGATTTTGCTGAAGATGGCTATAGAATTGGAATCTATTTCCTACCAGGAAAGCTTCCATGGGGCATTCTCATCCGCCAACGCAGCAGTGAATTTGATTGCCCAACGGATAGAGCAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.54

Weight (kDa)

5.24

Isoelectric Point (pI)

68.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AciI CCGC 1 cut(s) 528
AcsI RAATTY 2 cut(s) 69, 544
AcuI CTGAAG 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 198, 389
AjnI CCWGG 1 cut(s) 498
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 1 cut(s) 507
AluI AGCT 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 195
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 3 cut(s) 32, 404, 536
ApoI RAATTY 2 cut(s) 69, 544
AspS9I GGNCC 2 cut(s) 277, 295
AsuHPI GGTGA 3 cut(s) 73, 114, 464
AvaII GGWCC 2 cut(s) 277, 295
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 44, 391, 548
BccI CCATC 1 cut(s) 463
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 500
BciVI GTATCC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 474
BfuI GTATCC 1 cut(s) 24
BglII AGATCT 1 cut(s) 182
BisI GCNGC 3 cut(s) 33, 405, 537
BlsI GCNGC 3 cut(s) 34, 406, 538
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 2 cut(s) 277, 295
BmgT120I GGNCC 2 cut(s) 277, 295
BmiI GGNNCC 2 cut(s) 279, 297
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 303, 309, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 3 cut(s) 303, 309, 511
BseGI GGATG 3 cut(s) 127, 361, 524
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 44, 391, 548
BseYI CCCAGC 1 cut(s) 430
BshFI GGCC 1 cut(s) 308
BslFI GGGAC 3 cut(s) 23, 263, 281
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 3 cut(s) 23, 263, 281
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 182
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 1 cut(s) 528
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 279, 297
BssECI CCNNGG 3 cut(s) 303, 309, 511
BssMI GATC 1 cut(s) 182
BssT1I CCWWGG 3 cut(s) 303, 309, 511
Bst2UI CCWGG 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 179, 186, 329
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 3 cut(s) 127, 361, 524
BstKTI GATC 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 3 cut(s) 44, 391, 548
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 2 cut(s) 288, 310
BstYI RGATCY 1 cut(s) 182
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 3 cut(s) 127, 361, 524
BtsI GCAGTG 2 cut(s) 171, 546
BtsIMutI CAGTG 3 cut(s) 140, 171, 546
Cfr13I GGNCC 2 cut(s) 277, 295
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 1 cut(s) 512
CviJI RGCY 7 cut(s) 35, 160, 308, 328, 377, 473, 507
CviKI_1 RGCY 7 cut(s) 35, 160, 308, 328, 377, 473, 507
DdeI CTNAG 3 cut(s) 179, 186, 329
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 303, 309, 511
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 277, 295
Eco57I CTGAAG 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 3 cut(s) 303, 309, 511
ErhI CCWWGG 3 cut(s) 303, 309, 511
FaeI CATG 1 cut(s) 515
FaiI YATR 4 cut(s) 345, 415, 476, 513
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 3 cut(s) 23, 263, 281
FatI CATG 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 33, 405, 537
FokI GGATG 3 cut(s) 114, 368, 511
Fsp4HI GCNGC 3 cut(s) 33, 405, 537
FspBI CTAG 1 cut(s) 21
GluI GCNGC 3 cut(s) 33, 405, 537
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 1 cut(s) 308
Hin1II CATG 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 2 cut(s) 317, 485
HphI GGTGA 3 cut(s) 73, 114, 464
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 573
HpyAV CCTTC 2 cut(s) 204, 309
HpyCH4V TGCA 2 cut(s) 32, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 3 cut(s) 179, 186, 329
Hsp92II CATG 1 cut(s) 515
Kzo9I GATC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 97, 264, 294, 384, 416, 485, 512
Lsp1109I GCAGC 3 cut(s) 44, 391, 548
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 5 cut(s) 248, 251, 254, 257, 478
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 182
MluCI AATT 8 cut(s) 27, 49, 69, 106, 132, 145, 479, 544
MmeI TCCRAC 2 cut(s) 41, 333
MnlI CCTC 2 cut(s) 67, 307
MseI TTAA 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 500
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 518
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 1 cut(s) 511
NdeII GATC 1 cut(s) 182
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 2 cut(s) 279, 297
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 317, 485
PkrI GCNGC 3 cut(s) 34, 406, 538
Psp6I CCWGG 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 279, 297
PspPI GGNCC 2 cut(s) 277, 295
PsuI RGATCY 1 cut(s) 182
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 33, 405, 537
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 2 cut(s) 277, 295
ScrFI CCNGG 1 cut(s) 500
SetI ASST 3 cut(s) 59, 273, 509
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 277, 295
Sse9I AATT 8 cut(s) 27, 49, 69, 106, 132, 145, 479, 544
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 1 cut(s) 528
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 3 cut(s) 303, 309, 511
TasI AATT 8 cut(s) 27, 49, 69, 106, 132, 145, 479, 544
TfiI GAWTC 2 cut(s) 317, 485
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 147, 178, 546
TseI GCWGC 3 cut(s) 32, 404, 536
TspDTI ATGAA 3 cut(s) 17, 108, 243
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 3 cut(s) 147, 178, 546
VpaK11BI GGWCC 2 cut(s) 277, 295
XapI RAATTY 2 cut(s) 69, 544
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.