Rorug06G0227800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015386
Physical Location & Seq
Forward (+)
36541060 .. 36542380
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0227800.1

Sequence Viewer

Length: 1245 bp
ATGAACCAAATCCATGGAAAACTGCCGAATCTGTCATCGACAAGCTTAAGTTTTGTTAACTTGTCTTCTAATCTACTTTCTGGCGCAGTGCCATCATTTTCTCCTATGCTAGAAGAGATGTATCTCTCGAATAATAGGTTTTCAGGACCTTTGTCTTCCTTATGTGCAACGCAGTCTCCATCTTTAAGGTCTGTTGACATTTCTGAGAACCTATTGTCTGGGGAGCTTCCTAATTGTTGGATGCAATTTCAAGAATTGCAAGTGTTGAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAAGCTCGTTAGGCAATCTACAGGGAATTGTGATATTGCGTTTACATGATAACAACTTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTACCAGATTATCGATAGTTGACCTTGGCAACAATAACTTGTCGGGAAAGATACCAACATGGATTGGCCAAAGCCTACCAAAGTTGGTGATTCTACGCTTACGGTCCAATGAGTTCAATGAAATCATACCCTTCTCCTTGTGCACTCTAGCTGTCATTCATGTATTGGACCTCTCTCACAACAACATTTCCGGAGGCTTGCCGCATTGCTTCAATAACATCAGCCAAAGCGCTAATAATCATCATATCCATTACCCTTCGTTCACTAGTGTGTTAGTTAATTCAGAACTCGTGTGGAAGGGAATAGAAAGAGAGTTTGGGAAAAATCTTGATGGTATGAGAAGCATTGACATGTCAAGCAACTGTTTGATGGGGGAAATTCCGCAAAGTATAACAAATATGACAGAGTTGAAATCACTGAATCTGTCAAGAAACTATTTGACAGGAAAGCTTCCCGAAAACTTTGGTAACATGAAGATGTTGGAATCTCTTGATTTGTCAAGAAACCAGATATCTGGAAGAATTCCATCAGGCACCCAACTTCAGGGTTTTAATGCTTCTGCATATATGGGAAATCTTGGACTTTGTGGACCACCGCTGACACCAAATTGCTCACGAGATGGAGCAACTCAAGCTGATGATAACAAAGAACATGATAATGATGGTCTCATAAGCCTGGGATTTTTTTTCAGTGCTGTGCTGGGATTCGTCATTGGATTTTGGATGGTCTGCGGCAGTTTACTGCTTAAGACTTCTTGGAGATATGCTTATTTCAGATTCCTGGACAATGCAAAAGATTGGATTTATGTCAAAACCGCTGTGTACAAGGCAAAAGTGCAAAGGAGACTTCAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

45.79

Weight (kDa)

8.04

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 258 - 300 1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 920
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 5 cut(s) 590, 770, 983, 1119, 1203
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 3 cut(s) 268, 765, 909
AcuI CTGAAG 1 cut(s) 914
AfaI GTAC 2 cut(s) 391, 1211
AfeI AGCGCT 1 cut(s) 619
AfiI CCNNNNNNNGG 1 cut(s) 931
AflII CTTAAG 2 cut(s) 46, 1133
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 6 cut(s) 251, 268, 505, 601, 799, 1238
AhlI ACTAGT 1 cut(s) 653
AjnI CCWGG 2 cut(s) 1062, 1167
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 6 cut(s) 45, 226, 306, 539, 838, 1022
AluI AGCT 6 cut(s) 45, 226, 306, 539, 838, 1022
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 3 cut(s) 180, 1058, 1225
Alw44I GTGCAC 1 cut(s) 529
Aor13HI TCCGGA 1 cut(s) 578
Aor51HI AGCGCT 1 cut(s) 619
AoxI GGCC 1 cut(s) 454
ApaLI GTGCAC 1 cut(s) 529
ApoI RAATTY 3 cut(s) 268, 765, 909
AspLEI GCGC 2 cut(s) 86, 620
AspS9I GGNCC 4 cut(s) 146, 492, 556, 977
AsuHPI GGTGA 1 cut(s) 487
AvaII GGWCC 4 cut(s) 146, 492, 556, 977
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 1 cut(s) 456
BanI GGYRCC 1 cut(s) 920
BauI CACGAG 2 cut(s) 677, 1002
BbsI GAAGAC 2 cut(s) 57, 147
Bbv12I GWGCWC 1 cut(s) 533
BccI CCATC 8 cut(s) 100, 187, 713, 751, 922, 1001, 1043, 1105
BciT130I CCWGG 2 cut(s) 1064, 1169
BcoDI GTCTC 3 cut(s) 180, 1058, 1225
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 3 cut(s) 110, 536, 654
BfmI CTRYAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 621
BfrI CTTAAG 2 cut(s) 46, 1133
BisI GCNGC 2 cut(s) 590, 1120
BlsI GCNGC 2 cut(s) 591, 1121
Bme1390I CCNGG 2 cut(s) 1064, 1169
Bme18I GGWCC 4 cut(s) 146, 492, 556, 977
BmgT120I GGNCC 4 cut(s) 146, 492, 556, 977
BmiI GGNNCC 1 cut(s) 922
BmrFI CCNGG 2 cut(s) 1064, 1169
BmsI GCATC 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 151
BpiI GAAGAC 2 cut(s) 57, 147
BpuEI CTTGAG 1 cut(s) 1002
Bsa29I ATCGAT 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 1058
BsaJI CCNNGG 3 cut(s) 13, 412, 1063
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 931
Bse3DI GCAATG 1 cut(s) 592
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 1064, 1169
BseCI ATCGAT 1 cut(s) 401
BseDI CCNNGG 3 cut(s) 13, 412, 1063
BseGI GGATG 2 cut(s) 246, 1116
BseLI CCNNNNNNNGG 1 cut(s) 931
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 533
BseYI CCCAGC 1 cut(s) 1087
BshFI GGCC 1 cut(s) 456
BshNI GGYRCC 1 cut(s) 920
BshVI ATCGAT 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 533
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 931
BsmAI GTCTC 3 cut(s) 180, 1058, 1225
BsnI GGCC 1 cut(s) 456
Bso31I GGTCTC 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 533
Bsp13I TCCGGA 1 cut(s) 578
Bsp1407I TGTACA 1 cut(s) 1209
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 5 cut(s) 590, 770, 983, 1119, 1203
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 401
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 1 cut(s) 922
BspT107I GGYRCC 1 cut(s) 920
BspTI CTTAAG 2 cut(s) 46, 1133
BspTNI GGTCTC 1 cut(s) 1058
BsrDI GCAATG 1 cut(s) 592
BsrGI TGTACA 1 cut(s) 1209
BssECI CCNNGG 3 cut(s) 13, 412, 1063
BssSI CACGAG 2 cut(s) 677, 1002
BssT1I CCWWGG 2 cut(s) 13, 412
Bst2BI CACGAG 2 cut(s) 677, 1002
Bst2UI CCWGG 2 cut(s) 1064, 1169
Bst4CI ACNGT 3 cut(s) 389, 492, 752
Bst6I CTCTTC 1 cut(s) 108
BstAFI CTTAAG 2 cut(s) 46, 1133
BstAUI TGTACA 1 cut(s) 1209
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 246, 1116
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 2 cut(s) 86, 620
BstMAI GTCTC 3 cut(s) 180, 1058, 1225
BstMWI GCNNNNNNNGC 2 cut(s) 312, 1019
BstNI CCWGG 2 cut(s) 1064, 1169
BstNSI RCATGY 1 cut(s) 742
BstPAI GACNNNNGTC 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 1062, 1167
BstSFI CTRYAG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 533
BstV2I GAAGAC 2 cut(s) 57, 147
BstXI CCANNNNNNTGG 2 cut(s) 14, 902
Bsu15I ATCGAT 1 cut(s) 401
BsuRI GGCC 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 246, 1116
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 93, 803, 1084
Cac8I GCNNGC 1 cut(s) 587
CfoI GCGC 2 cut(s) 86, 620
Cfr13I GGNCC 4 cut(s) 146, 492, 556, 977
ClaI ATCGAT 1 cut(s) 401
Csp6I GTAC 2 cut(s) 390, 1210
CviAII CATG 7 cut(s) 14, 347, 447, 548, 739, 859, 1040
CviQI GTAC 2 cut(s) 390, 1210
DdeI CTNAG 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 13, 412
Eco31I GGTCTC 1 cut(s) 1058
Eco32I GATATC 1 cut(s) 900
Eco47I GGWCC 4 cut(s) 146, 492, 556, 977
Eco47III AGCGCT 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 914
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 909
EcoRII CCWGG 2 cut(s) 1062, 1167
EcoRV GATATC 1 cut(s) 900
EcoT14I CCWWGG 2 cut(s) 13, 412
ErhI CCWWGG 2 cut(s) 13, 412
FaeI CATG 7 cut(s) 17, 350, 450, 551, 742, 862, 1043
FatI CATG 7 cut(s) 13, 346, 446, 547, 738, 858, 1039
Fnu4HI GCNGC 2 cut(s) 590, 1120
FokI GGATG 2 cut(s) 253, 1123
Fsp4HI GCNGC 2 cut(s) 590, 1120
FspBI CTAG 3 cut(s) 110, 536, 654
GlaI GCGC 2 cut(s) 85, 619
GluI GCNGC 2 cut(s) 590, 1120
GsaI CCCAGC 1 cut(s) 1091
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 579
HhaI GCGC 2 cut(s) 86, 620
Hin1II CATG 7 cut(s) 17, 350, 450, 551, 742, 862, 1043
Hin6I GCGC 2 cut(s) 84, 618
HinP1I GCGC 2 cut(s) 84, 618
HincII GTYRAC 3 cut(s) 58, 196, 409
HindII GTYRAC 3 cut(s) 58, 196, 409
HindIII AAGCTT 2 cut(s) 43, 836
HinfI GANTC 6 cut(s) 28, 478, 808, 872, 1092, 1164
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 9 cut(s) 58, 196, 344, 409, 531, 651, 977, 1127, 1210
Hpy188I TCNGA 3 cut(s) 205, 673, 1163
Hpy8I GTNNAC 9 cut(s) 58, 196, 344, 409, 531, 651, 977, 1127, 1210
HpyAV CCTTC 4 cut(s) 384, 529, 654, 679
HpyCH4III ACNGT 3 cut(s) 389, 492, 752
HpyCH4V TGCA 7 cut(s) 167, 244, 259, 531, 950, 1178, 1225
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 1019
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 7 cut(s) 17, 350, 450, 551, 742, 862, 1043
HspAI GCGC 2 cut(s) 84, 618
Kpn2I TCCGGA 1 cut(s) 578
KspAI GTTAAC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 223, 1010
LweI GCATC 1 cut(s) 231
MaeI CTAG 3 cut(s) 110, 536, 654
MaeIII GTNAC 1 cut(s) 854
MboII GAAGA 5 cut(s) 57, 125, 147, 874, 918
MhlI GDGCHC 1 cut(s) 533
MlsI TGGCCA 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 456
MmeI TCCRAC 2 cut(s) 218, 849
MnlI CCTC 2 cut(s) 569, 575
Mox20I TGGCCA 1 cut(s) 456
MroI TCCGGA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 456
MseI TTAA 6 cut(s) 47, 57, 185, 666, 939, 1134
MslI CAYNNNNRTG 4 cut(s) 656, 737, 863, 1044
Msp20I TGGCCA 1 cut(s) 456
MspA1I CMGCKG 2 cut(s) 985, 1205
MspCI CTTAAG 2 cut(s) 46, 1133
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 1064, 1169
MvaI CCWGG 2 cut(s) 1064, 1169
MwoI GCNNNNNNNGC 2 cut(s) 312, 1019
NcoI CCATGG 1 cut(s) 13
NlaIII CATG 7 cut(s) 17, 350, 450, 551, 742, 862, 1043
NlaIV GGNNCC 1 cut(s) 922
NspI RCATGY 1 cut(s) 742
OliI CACNNNNGTG 1 cut(s) 656
PciI ACATGT 1 cut(s) 738
PfeI GAWTC 6 cut(s) 28, 478, 808, 872, 1092, 1164
PfoI TCCNGGA 1 cut(s) 1167
PkrI GCNGC 2 cut(s) 591, 1121
PpuMI RGGWCCY 1 cut(s) 146
PscI ACATGT 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 1062, 1167
PspFI CCCAGC 1 cut(s) 1087
PspGI CCWGG 2 cut(s) 1062, 1167
PspN4I GGNNCC 1 cut(s) 922
PspPI GGNCC 4 cut(s) 146, 492, 556, 977
PspPPI RGGWCCY 1 cut(s) 146
RsaI GTAC 2 cut(s) 391, 1211
RsaNI GTAC 2 cut(s) 390, 1210
RseI CAYNNNNRTG 4 cut(s) 656, 737, 863, 1044
SaqAI TTAA 6 cut(s) 47, 57, 185, 666, 939, 1134
SatI GCNGC 2 cut(s) 590, 1120
Sau96I GGNCC 4 cut(s) 146, 492, 556, 977
ScrFI CCNGG 2 cut(s) 1064, 1169
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 4 cut(s) 146, 492, 556, 977
SmiMI CAYNNNNRTG 4 cut(s) 656, 737, 863, 1044
SmlI CTYRAG 3 cut(s) 46, 1017, 1133
SmoI CTYRAG 3 cut(s) 46, 1017, 1133
SpeI ACTAGT 1 cut(s) 653
SsiI CCGC 5 cut(s) 590, 770, 983, 1119, 1203
SspMI CTAG 3 cut(s) 110, 536, 654
StyD4I CCNGG 2 cut(s) 1062, 1167
StyI CCWWGG 2 cut(s) 13, 412
TaaI ACNGT 3 cut(s) 389, 492, 752
TaqI TCGA 3 cut(s) 38, 128, 401
TatI WGTACW 1 cut(s) 1209
TauI GCSGC 2 cut(s) 592, 1122
TfiI GAWTC 6 cut(s) 28, 478, 808, 872, 1092, 1164
Tru1I TTAA 6 cut(s) 47, 57, 185, 666, 939, 1134
Tru9I TTAA 6 cut(s) 47, 57, 185, 666, 939, 1134
TscAI CASTG 3 cut(s) 93, 810, 1084
TspDTI ATGAA 4 cut(s) 17, 522, 536, 875
TspRI CASTG 3 cut(s) 93, 810, 1084
Vha464I CTTAAG 2 cut(s) 46, 1133
VneI GTGCAC 1 cut(s) 529
VpaK11BI GGWCC 4 cut(s) 146, 492, 556, 977
XapI RAATTY 3 cut(s) 268, 765, 909
XceI RCATGY 1 cut(s) 742
XspI CTAG 3 cut(s) 110, 536, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.