MD00G1056400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0015386
Physical Location & Seq
Forward (+)
10536985 .. 10538598
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1056400.v1.1.491

Sequence Viewer

Length: 543 bp
ATGAAATCTGTGTCTCCAGCCCGACCAATCACATCCCTTCGAAAACTCCCTCCCACCTCTACCTCTTGCTCGAAAATCTCCGCTCTAGCCAATGTCGCTACGCCTGCGCTCAATTTCCGGGTTCCACGACACCCGATTCGCCGGCGGAATGATATCCGGAAGCCCCAAACAGCTGTAAGATCTCAGTTTTCTTCAAACCCACAGAGCAATGAAGACCCAGACGCCCAAGTTCAAGACCTTGTGGTCCCACAACATTGGTTGACCCCCTCAAAGGCCTTGGAGGAATCAGAGTGGCTGAGGGTTACTTTGCACAAGTGGTTGGACGACGAGTACTGCCCGGAACCAACCAATGTCGAAATCAGCAAGATTGCTGCTCAATCATTCTACAAATCTTTACTCCAAAAACAGACGGATTTGGGTGAGATTTTGTTGAAGATGGCCATAGAATTGGAATCCATTTCGTACCAGGAAAGCTTCCACGGCGCGTTCTCGTCAGCCAACGCGGCCGTGAATTTGATTTCCCAACGGATAGAGCAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.22

Weight (kDa)

8.58

Isoelectric Point (pI)

71.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 83
AccII CGCG 2 cut(s) 485, 503
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 3 cut(s) 81, 145, 503
AcoI YGGCCR 2 cut(s) 438, 504
AcsI RAATTY 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 332, 464
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 3 cut(s) 195, 233, 433
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 2 cut(s) 173, 474
AluI AGCT 2 cut(s) 173, 474
Alw26I GTCTC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 156
AoxI GGCC 4 cut(s) 273, 438, 504, 537
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspLEI GCGC 2 cut(s) 109, 485
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 2 cut(s) 119, 338
AsuHPI GGTGA 1 cut(s) 431
AsuII TTCGAA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 430
BceAI ACGGC 2 cut(s) 491, 496
BciT130I CCWGG 1 cut(s) 467
BcnI CCSGG 2 cut(s) 119, 338
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 86
BglI GCCNNNNNGGC 1 cut(s) 503
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 372, 504
BlsI GCNGC 2 cut(s) 373, 505
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 119, 338, 467
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 123, 246, 342
BmrFI CCNGG 3 cut(s) 119, 338, 467
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 40
BpuMI CCSGG 2 cut(s) 119, 338
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 276, 478
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 276, 478
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 197, 287
BseX3I CGGCCG 1 cut(s) 504
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 2 cut(s) 485, 503
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 4 cut(s) 275, 440, 506, 539
BsiEI CGRYCG 1 cut(s) 507
BsiSI CCGG 4 cut(s) 118, 142, 157, 338
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 4 cut(s) 275, 440, 506, 539
Bsp119I TTCGAA 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 179
BspACI CCGC 3 cut(s) 81, 145, 503
BspANI GGCC 4 cut(s) 275, 440, 506, 539
BspCNI CTCAG 2 cut(s) 196, 288
BspEI TCCGGA 1 cut(s) 156
BspFNI CGCG 2 cut(s) 485, 503
BspLI GGNNCC 3 cut(s) 123, 246, 342
BspT104I TTCGAA 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 276, 478
BssMI GATC 1 cut(s) 179
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 467
BstACI GRCGYC 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 105, 143, 537
BstDEI CTNAG 2 cut(s) 183, 296
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 485, 503
BstHHI GCGC 2 cut(s) 109, 485
BstKTI GATC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 179
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 4 cut(s) 95, 104, 480, 503
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 117, 336, 465
BstUI CGCG 2 cut(s) 485, 503
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 2 cut(s) 255, 448
BstYI RGATCY 1 cut(s) 179
BstZI CGGCCG 1 cut(s) 504
BsuRI GGCC 4 cut(s) 275, 440, 506, 539
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 1 cut(s) 32
Cac8I GCNNGC 3 cut(s) 105, 143, 537
CfoI GCGC 2 cut(s) 109, 485
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 331, 463
CviQI GTAC 2 cut(s) 331, 463
DdeI CTNAG 2 cut(s) 183, 296
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 438, 504
EagI CGGCCG 1 cut(s) 504
EciI GGCGGA 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 276
Eco147I AGGCCT 2 cut(s) 275, 539
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 465
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaiI YATR 1 cut(s) 443
FaqI GGGAC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 372, 504
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 372, 504
FspBI CTAG 1 cut(s) 86
GlaI GCGC 2 cut(s) 108, 484
GluI GCNGC 2 cut(s) 372, 504
HaeIII GGCC 4 cut(s) 275, 440, 506, 539
HapII CCGG 4 cut(s) 118, 142, 157, 338
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 109, 485
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 2 cut(s) 107, 483
HinP1I GCGC 2 cut(s) 107, 483
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 3 cut(s) 136, 284, 452
HpaII CCGG 4 cut(s) 118, 142, 157, 338
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 157, 233
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 104, 480, 503
HpyF3I CTNAG 2 cut(s) 183, 296
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 2 cut(s) 107, 483
Kpn2I TCCGGA 1 cut(s) 156
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 301
MalI GATC 1 cut(s) 181
MbiI CCGCTC 1 cut(s) 83
MboI GATC 1 cut(s) 179
MboII GAAGA 3 cut(s) 183, 224, 445
MflI RGATCY 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 3 cut(s) 112, 446, 511
MluNI TGGCCA 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 6 cut(s) 60, 67, 73, 274, 277, 291
Mox20I TGGCCA 1 cut(s) 440
MreI CGCCGGCG 1 cut(s) 141
MroI TCCGGA 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 141
MscI TGGCCA 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 4 cut(s) 118, 142, 157, 338
MspR9I CCNGG 3 cut(s) 119, 338, 467
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 2 cut(s) 485, 503
MwoI GCNNNNNNNGC 4 cut(s) 95, 104, 480, 503
NaeI GCCGGC 1 cut(s) 143
NciI CCSGG 2 cut(s) 119, 338
NdeII GATC 1 cut(s) 179
NgoMIV GCCGGC 1 cut(s) 141
NlaIV GGNNCC 3 cut(s) 123, 246, 342
NspV TTCGAA 1 cut(s) 40
PceI AGGCCT 2 cut(s) 275, 539
PdiI GCCGGC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 136, 284, 452
PkrI GCNGC 2 cut(s) 373, 505
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 3 cut(s) 123, 246, 342
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 332, 464
RsaNI GTAC 2 cut(s) 331, 463
SatI GCNGC 2 cut(s) 372, 504
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 119, 338, 467
SetI ASST 5 cut(s) 59, 65, 175, 240, 476
SfuI TTCGAA 1 cut(s) 40
SgrAI CRCCGGYG 1 cut(s) 141
SinI GGWCC 1 cut(s) 244
Sse9I AATT 3 cut(s) 112, 446, 511
SseBI AGGCCT 2 cut(s) 275, 539
SsiI CCGC 3 cut(s) 81, 145, 503
SspMI CTAG 1 cut(s) 86
StuI AGGCCT 2 cut(s) 275, 539
StyD4I CCNGG 3 cut(s) 117, 336, 465
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 3 cut(s) 40, 71, 354
TasI AATT 3 cut(s) 112, 446, 511
TatI WGTACW 1 cut(s) 330
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 3 cut(s) 136, 284, 452
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 17, 225
TspGWI ACGGA 2 cut(s) 425, 541
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 511
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.