FvH4_2g24710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015386
Physical Location & Seq
Reverse (-)
20080227 .. 20080873
647 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24710.t1

Sequence Viewer

Length: 549 bp
ATGAAATCTTTGTATGCCGCTCGAACAATCACAGCTATTCCAAAGTTGAGTTCTTCCTCTTGCAATAACATTTCAGCTAGAACCAATCTTGCTGTGCCTGCACTCAATGTCTTGGTTCAGTCGCAGCCAATTGTCACAAAATTTGTTCTTTCCAAGTTACAAACAGCTCTAAGATCTCAGTCTGCTTCAAACCCAGAAACCCAAGTGGATGAAGAAGAAGACCCAGATGCCCAAGTTCAAGACTTGAGTGTCCCAGAACATTACTTGGTCCCTTCCAAGGCCTTGGAGGAATCAGAGTGGTTGAGGGTCACTTTGCATAAGTGGTTGGATGATGAGTACTGCCCAGAACCAACCAATGTGGAAATCAGCAAGATTGCTGCTCAGTCATACTATAAGGCTTTGCTAGAGAAACAGACTGATCTGGGTGAGATTTTGTTGAAGATGGCAATGGAATTGGAATCCATTTCTTATCAGGAGAGTTTTCATGGGGCTTTCTCATCAGCCAATGCAGCTGTGAGTTTGATTGCACAAAGGATAGAGCAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.15

Weight (kDa)

4.82

Isoelectric Point (pI)

65.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 189, 239, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 4 cut(s) 35, 77, 167, 512
AluI AGCT 4 cut(s) 35, 77, 167, 512
AoxI GGCC 2 cut(s) 279, 543
ApeKI GCWGC 3 cut(s) 124, 377, 509
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 136, 364, 521
BccI CCATC 1 cut(s) 436
BfaI CTAG 3 cut(s) 78, 404, 547
BglII AGATCT 1 cut(s) 173
BisI GCNGC 4 cut(s) 18, 125, 378, 510
BlsI GCNGC 4 cut(s) 19, 126, 379, 511
BmcAI AGTACT 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 276, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 276, 282
BseGI GGATG 2 cut(s) 214, 334
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 191, 395
BseXI GCAGC 3 cut(s) 136, 364, 521
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 2 cut(s) 281, 545
BslFI GGGAC 2 cut(s) 236, 254
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 2 cut(s) 236, 254
BsnI GGCC 2 cut(s) 281, 545
Bsp143I GATC 2 cut(s) 173, 418
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 281, 545
BspCNI CTCAG 2 cut(s) 190, 394
BspLI GGNNCC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 276, 282
BssMI GATC 2 cut(s) 173, 418
BssT1I CCWWGG 2 cut(s) 276, 282
BstC8I GCNNGC 2 cut(s) 99, 543
BstDEI CTNAG 3 cut(s) 170, 177, 381
BstF5I GGATG 2 cut(s) 214, 334
BstKTI GATC 2 cut(s) 176, 421
BstMBI GATC 2 cut(s) 173, 418
BstMWI GCNNNNNNNGC 2 cut(s) 98, 509
BstV1I GCAGC 3 cut(s) 136, 364, 521
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 2 cut(s) 281, 545
BtsCI GGATG 2 cut(s) 214, 334
Cac8I GCNNGC 2 cut(s) 99, 543
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 337
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 1 cut(s) 485
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 170, 177, 381
DpnI GATC 2 cut(s) 175, 420
DpnII GATC 2 cut(s) 173, 418
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 276, 282
Eco147I AGGCCT 2 cut(s) 281, 545
Eco47I GGWCC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 276, 282
ErhI CCWWGG 2 cut(s) 276, 282
FaeI CATG 1 cut(s) 488
FaiI YATR 5 cut(s) 15, 318, 388, 393, 486
FaqI GGGAC 2 cut(s) 236, 254
FatI CATG 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 18, 125, 378, 510
FokI GGATG 2 cut(s) 221, 341
Fsp4HI GCNGC 4 cut(s) 18, 125, 378, 510
FspBI CTAG 3 cut(s) 78, 404, 547
GluI GCNGC 4 cut(s) 18, 125, 378, 510
HaeIII GGCC 2 cut(s) 281, 545
Hin1II CATG 1 cut(s) 488
HinfI GANTC 2 cut(s) 290, 458
HphI GGTGA 1 cut(s) 437
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 239, 473
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 5 cut(s) 63, 101, 316, 509, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 509
HpyF3I CTNAG 3 cut(s) 170, 177, 381
Hsp92II CATG 1 cut(s) 488
Kzo9I GATC 2 cut(s) 173, 418
LpnPI CCDG 8 cut(s) 111, 207, 237, 267, 357, 407, 458, 527
Lsp1109I GCAGC 3 cut(s) 136, 364, 521
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 78, 404, 547
MaeIII GTNAC 3 cut(s) 133, 156, 307
MalI GATC 2 cut(s) 175, 420
MbiI CCGCTC 1 cut(s) 20
MboI GATC 2 cut(s) 173, 418
MboII GAAGA 5 cut(s) 45, 224, 227, 230, 451
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 173
MluCI AATT 3 cut(s) 129, 140, 452
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 3 cut(s) 67, 280, 297
MspA1I CMGCKG 1 cut(s) 512
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 98, 509
NdeII GATC 2 cut(s) 173, 418
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 133, 307
PceI AGGCCT 2 cut(s) 281, 545
PfeI GAWTC 2 cut(s) 290, 458
PkrI GCNGC 4 cut(s) 19, 126, 379, 511
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SatI GCNGC 4 cut(s) 18, 125, 378, 510
Sau3AI GATC 2 cut(s) 173, 418
Sau96I GGNCC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 338
SetI ASST 4 cut(s) 37, 79, 169, 514
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 129, 140, 452
SseBI AGGCCT 2 cut(s) 281, 545
SsiI CCGC 1 cut(s) 18
SspMI CTAG 3 cut(s) 78, 404, 547
StuI AGGCCT 2 cut(s) 281, 545
StyI CCWWGG 2 cut(s) 276, 282
TaqI TCGA 1 cut(s) 22
TasI AATT 3 cut(s) 129, 140, 452
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 2 cut(s) 290, 458
TseFI GTSAC 2 cut(s) 133, 307
TseI GCWGC 3 cut(s) 124, 377, 509
Tsp45I GTSAC 2 cut(s) 133, 307
TspDTI ATGAA 3 cut(s) 17, 225, 473
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 140
XspI CTAG 3 cut(s) 78, 404, 547
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.