Rw6G029700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015386
Physical Location & Seq
Reverse (-)
53738698 .. 53740986
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029700.1

Sequence Viewer

Length: 558 bp
ATGAAATCCTTGTATGGAGCTCGAATAATTACAGCAATTCCAAAGTTCAAGTCTGCCTCTACCAATAAAATTCCAGCAAAAACCAATCTTGCTGTGCCTGCACTCAATTTCTTGGTTCCATCGCAGCCAATTCCCACAAAGACTGTCCTTTTCAAGTCACAAACAGCTCCAAGATCTCAGTCTGCCTCAAACCCAGAAACCCATGAGCAAGAAATGGATGAAGAAGAAGACCCGGATGACCAAGTTCAAGACTTGACCGTCCCAGAACATTACTTGGTCCCTTCCAAGGCCTTGGAGGAATCAGAGTGGTTGAGGGTGACTTTGCATAAGTGGTTGGATGATGAGTACTGCCCAGAACCAACCAATGTGGAAATCAGCAAGATTGCTGCTCAATCATACTGTAAGGCTTTGCTAGAGAAACAGACTGATCTGGGTGAGATTTTGTTGAAGATGGCAATGGACTTGGAATCCATTTCTTATCAGGAAAGTTTTCATGGGGCATTCTCATCAGCCAATGCAGCTGTGAATTTGATTGCCCAGAGGATAGAGCAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.63

Weight (kDa)

4.86

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AcsI RAATTY 2 cut(s) 69, 526
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 4 cut(s) 49, 154, 248, 448
AluBI AGCT 3 cut(s) 20, 167, 521
AluI AGCT 3 cut(s) 20, 167, 521
Alw21I GWGCWC 1 cut(s) 22
AoxI GGCC 2 cut(s) 288, 552
ApeKI GCWGC 3 cut(s) 124, 386, 518
ApoI RAATTY 2 cut(s) 69, 526
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 328, 446
AvaII GGWCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 136, 373, 530
BccI CCATC 2 cut(s) 127, 445
BcnI CCSGG 1 cut(s) 233
BfaI CTAG 2 cut(s) 413, 556
BglII AGATCT 1 cut(s) 173
BisI GCNGC 3 cut(s) 125, 387, 519
BlsI GCNGC 3 cut(s) 126, 388, 520
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 117, 279
BmrFI CCNGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 285, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 285, 291
BseGI GGATG 3 cut(s) 223, 241, 343
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 136, 373, 530
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 2 cut(s) 290, 554
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 245, 263
BslI CCNNNNNNNGG 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 245, 263
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 290, 554
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 173, 427
BspANI GGCC 2 cut(s) 290, 554
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 117, 279
BsrDI GCAATG 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 285, 291
BssMI GATC 2 cut(s) 173, 427
BssT1I CCWWGG 2 cut(s) 285, 291
Bst4CI ACNGT 3 cut(s) 145, 259, 401
BstC8I GCNNGC 2 cut(s) 99, 552
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 223, 241, 343
BstKTI GATC 2 cut(s) 176, 430
BstMBI GATC 2 cut(s) 173, 427
BstMWI GCNNNNNNNGC 2 cut(s) 98, 518
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 136, 373, 530
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 2 cut(s) 290, 554
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 223, 241, 343
Cac8I GCNNGC 2 cut(s) 99, 552
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 346
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviAII CATG 2 cut(s) 203, 494
CviJI RGCY 8 cut(s) 20, 127, 167, 290, 407, 512, 521, 554
CviKI_1 RGCY 8 cut(s) 20, 127, 167, 290, 407, 512, 521, 554
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 175, 429
DpnII GATC 2 cut(s) 173, 427
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 285, 291
Eco147I AGGCCT 2 cut(s) 290, 554
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 285, 291
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 2 cut(s) 285, 291
FaeI CATG 2 cut(s) 206, 497
FaiI YATR 5 cut(s) 15, 204, 327, 397, 495
FaqI GGGAC 2 cut(s) 245, 263
FatI CATG 2 cut(s) 202, 493
Fnu4HI GCNGC 3 cut(s) 125, 387, 519
FokI GGATG 3 cut(s) 230, 248, 350
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 125, 387, 519
FspBI CTAG 2 cut(s) 413, 556
GluI GCNGC 3 cut(s) 125, 387, 519
HaeIII GGCC 2 cut(s) 290, 554
HapII CCGG 1 cut(s) 233
Hin1II CATG 2 cut(s) 206, 497
HinfI GANTC 2 cut(s) 299, 467
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 328, 446
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 248, 482
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 3 cut(s) 145, 259, 401
HpyCH4V TGCA 3 cut(s) 101, 325, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 518
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 206, 497
Kzo9I GATC 2 cut(s) 173, 427
LmnI GCTCC 2 cut(s) 17, 172
Lsp1109I GCAGC 3 cut(s) 136, 373, 530
MaeI CTAG 2 cut(s) 413, 556
MaeIII GTNAC 2 cut(s) 156, 316
MalI GATC 2 cut(s) 175, 429
MboI GATC 2 cut(s) 173, 427
MboII GAAGA 4 cut(s) 233, 236, 239, 460
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 27, 36, 69, 106, 129, 526
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 67, 196, 289, 306, 534
MroXI GAANNNNTTC 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 98, 518
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 173, 427
NlaIII CATG 2 cut(s) 206, 497
NlaIV GGNNCC 2 cut(s) 117, 279
NmuCI GTSAC 2 cut(s) 156, 316
PceI AGGCCT 2 cut(s) 290, 554
PctI GAATGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 299, 467
PkrI GCNGC 3 cut(s) 126, 388, 520
Psp124BI GAGCTC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 117, 279
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacI GAGCTC 1 cut(s) 22
SatI GCNGC 3 cut(s) 125, 387, 519
Sau3AI GATC 2 cut(s) 173, 427
Sau96I GGNCC 1 cut(s) 277
ScaI AGTACT 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 22
SetI ASST 3 cut(s) 22, 169, 523
SinI GGWCC 1 cut(s) 277
Sse9I AATT 6 cut(s) 27, 36, 69, 106, 129, 526
SseBI AGGCCT 2 cut(s) 290, 554
SspMI CTAG 2 cut(s) 413, 556
SstI GAGCTC 1 cut(s) 22
StuI AGGCCT 2 cut(s) 290, 554
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 285, 291
TaaI ACNGT 3 cut(s) 145, 259, 401
TaqI TCGA 1 cut(s) 22
TasI AATT 6 cut(s) 27, 36, 69, 106, 129, 526
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 2 cut(s) 299, 467
TseFI GTSAC 2 cut(s) 156, 316
TseI GCWGC 3 cut(s) 124, 386, 518
Tsp45I GTSAC 2 cut(s) 156, 316
TspDTI ATGAA 3 cut(s) 17, 234, 482
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 2 cut(s) 69, 526
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 413, 556
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.