pycom03g21930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015386
Physical Location & Seq
Reverse (-)
22121600 .. 22122698
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21930.1

Sequence Viewer

Length: 540 bp
ATGAAATCTCTGTCTCCAGTCCGACCAATCACAACCCTTCCAAAACTCCCTCCTCCCACCTCTTGCCCGAAAATCTCCGCTCTAGTCAATGTTGCTACGCCTGCGCTCAATTTCCGGGTTCCACGACACCCGATTTGCCTGCGGAATGATATCCGGAAGCCCCAAACTGCTGTAAGATCTCAGTTTTCTTCAAACCCACAGAGCAATGAAGACCCAGATGCCCAAGTTCAAGACCTTGTGGTCCCACAACATTGGTTGACCCCCTCCAAGGCCTTGGAGGAATCAGAGTGGCTGAGGGTTACTTTGCACAAGTGGTTGGACGATGAGTACTGCCCGGAATCCACCAATGTCGAAATCAGCAAGATTGCTGCTCAATCGTTCTACAAATCTCTACTCGAAAAACAGACGGATTTGGGTGAGATTTTGTTGAAGATGGCCATAGAATTGGAATCCATTTCGTACCAGGAAAGCTTCCACGGCGCGTTCTCATCAGCGAACGCCGCCGTGAATTTGATTTCCCAACGGATAGAGCAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.06

Weight (kDa)

6.09

Isoelectric Point (pI)

67.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 80
AccII CGCG 1 cut(s) 482
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 3 cut(s) 78, 142, 501
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 2 cut(s) 329, 461
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 3 cut(s) 192, 230, 430
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 153
AoxI GGCC 3 cut(s) 270, 435, 534
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 2 cut(s) 106, 482
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 2 cut(s) 116, 335
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 427
BceAI ACGGC 2 cut(s) 488, 493
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 464
BcnI CCSGG 2 cut(s) 116, 335
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 176
BisI GCNGC 2 cut(s) 369, 501
BlsI GCNGC 2 cut(s) 370, 502
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 116, 335, 464
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 120, 243
BmrFI CCNGG 3 cut(s) 116, 335, 464
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 116, 335
BsaJI CCNNGG 3 cut(s) 267, 273, 475
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 153
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 3 cut(s) 267, 273, 475
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 194, 284
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 482
BshFI GGCC 3 cut(s) 272, 437, 536
BsiSI CCGG 3 cut(s) 115, 154, 335
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 3 cut(s) 272, 437, 536
Bsp13I TCCGGA 1 cut(s) 153
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 3 cut(s) 78, 142, 501
BspANI GGCC 3 cut(s) 272, 437, 536
BspCNI CTCAG 2 cut(s) 193, 285
BspEI TCCGGA 1 cut(s) 153
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 2 cut(s) 120, 243
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 267, 273, 475
BssMI GATC 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 267, 273
Bst2UI CCWGG 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 102, 140, 534
BstDEI CTNAG 2 cut(s) 180, 293
BstDSI CCRYGG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 482
BstHHI GCGC 2 cut(s) 106, 482
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 3 cut(s) 101, 477, 500
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 3 cut(s) 114, 333, 462
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 3 cut(s) 252, 274, 445
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 3 cut(s) 272, 437, 536
BtgI CCRYGG 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 102, 140, 534
CfoI GCGC 2 cut(s) 106, 482
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 328, 460
CviJI RGCY 6 cut(s) 160, 272, 292, 437, 471, 536
CviKI_1 RGCY 6 cut(s) 160, 272, 292, 437, 471, 536
CviQI GTAC 2 cut(s) 328, 460
DdeI CTNAG 2 cut(s) 180, 293
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 435
Eco130I CCWWGG 2 cut(s) 267, 273
Eco147I AGGCCT 2 cut(s) 272, 536
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 462
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 267, 273
ErhI CCWWGG 2 cut(s) 267, 273
FaiI YATR 1 cut(s) 440
FaqI GGGAC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 369, 501
Fsp4HI GCNGC 2 cut(s) 369, 501
FspBI CTAG 1 cut(s) 83
GlaI GCGC 2 cut(s) 105, 481
GluI GCNGC 2 cut(s) 369, 501
HaeIII GGCC 3 cut(s) 272, 437, 536
HapII CCGG 3 cut(s) 115, 154, 335
HhaI GCGC 2 cut(s) 106, 482
Hin6I GCGC 2 cut(s) 104, 480
HinP1I GCGC 2 cut(s) 104, 480
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 3 cut(s) 281, 338, 449
HpaII CCGG 3 cut(s) 115, 154, 335
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 23, 286
Hpy188III TCNNGA 2 cut(s) 154, 230
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 477, 500
HpyF3I CTNAG 2 cut(s) 180, 293
HspAI GCGC 2 cut(s) 104, 480
Kpn2I TCCGGA 1 cut(s) 153
Kzo9I GATC 1 cut(s) 176
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 80
MboI GATC 1 cut(s) 176
MboII GAAGA 3 cut(s) 180, 221, 442
MflI RGATCY 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 3 cut(s) 109, 443, 508
MluNI TGGCCA 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 46, 297
MnlI CCTC 6 cut(s) 60, 63, 70, 271, 274, 288
Mox20I TGGCCA 1 cut(s) 437
MroI TCCGGA 1 cut(s) 153
MscI TGGCCA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 437
MspI CCGG 3 cut(s) 115, 154, 335
MspR9I CCNGG 3 cut(s) 116, 335, 464
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 3 cut(s) 101, 477, 500
NciI CCSGG 2 cut(s) 116, 335
NdeII GATC 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 120, 243
PceI AGGCCT 2 cut(s) 272, 536
PfeI GAWTC 3 cut(s) 281, 338, 449
PkrI GCNGC 2 cut(s) 370, 502
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 120, 243
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 2 cut(s) 329, 461
RsaNI GTAC 2 cut(s) 328, 460
SatI GCNGC 2 cut(s) 369, 501
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 241
ScaI AGTACT 1 cut(s) 329
ScrFI CCNGG 3 cut(s) 116, 335, 464
SetI ASST 3 cut(s) 62, 237, 473
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 241
Sse9I AATT 3 cut(s) 109, 443, 508
SseBI AGGCCT 2 cut(s) 272, 536
SsiI CCGC 3 cut(s) 78, 142, 501
SspMI CTAG 1 cut(s) 83
StuI AGGCCT 2 cut(s) 272, 536
StyD4I CCNGG 3 cut(s) 114, 333, 462
StyI CCWWGG 2 cut(s) 267, 273
TaqI TCGA 2 cut(s) 351, 396
TasI AATT 3 cut(s) 109, 443, 508
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 3 cut(s) 281, 338, 449
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 17, 222
TspGWI ACGGA 2 cut(s) 422, 538
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 508
XspI CTAG 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.