AT4G03415

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
1503492 .. 1506535
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03415.3

Sequence Viewer

Length: 1407 bp
ATGGGGGGTTGTGTGTCGACTAGTAGTAAGAGTACGTGTAGCAGCTGGAGCAATGGAGAGAAGCCTGTGCGTCGACCATATCTCGGGATTGGTTGTTGTGTGAGCAAAAGGGCGAAGAGAACGTTTTCAGACCACATTGTCTCGTTGCAGAACTTGACTTCTATACCAAATCGGATCACCAGCAGCAGCAAGAGCAGGAGCTCTTGCATTTTCACTCAACAAGGACGCAAGGGTATTAATCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTGAAGATGTGACATTTTGTGGTGTATTTGATGGTCATGGTCCTTATGGCCATCTTGTTGCTCGTAAAGTGAGAGATACATTGCCTGTGAAGTTACAGTTTTTCTTTCAGACGCTTCAGTCGAAGCAAAACTGTTCTAAAGGAACTCGATTCAGAAGAAATTCAAGCAAATCAGCTGTCCAAGAAGCTGTTAAAGAAGGATCTGACGAGGATAAACTTAAAGGCTTATGGGGAGAAGCTTTCTTGAAATCTTTTAAAGCCATGGATAAGGAACTGCGGTCTCATCCTAATCTGGACTGTTTTTGTAGTGGCAGCACTGGCGTAACAATTCTTAAACAGGGGTCTAATCTCTTCATGGGAAACATCGGGGATTCTCGGGCCATCCTTGGATCAAAAGACAGTAACGATTCTATGGTGGCAACTCAACTGACAGTTGATCTGAAGCCGGATTTACCTAGGGAAGCTGAGAGGATCAAACGGTGTAAAGGTCGAGTATTTGCGATGGAAGACGAGCCAGAGGTGCCGCGAGTCTGGCTACCTTATGATGATGCACCTGGATTAGCCATGGCCAGGGCGTTTGGTGACTTCTGTCTAAAAGAGTATGGAGTCATTTCAGTACCTGAGTTCACTCACCGTGTTCTTACAGACAGAGATCAATTCATTGTTCTTGCCTCTGACGGAGTATGGGATGTGTTAAGCAACGAAGAAGTGGTTGACATTGTAGCTTCAGCTACAAGCCGGGCATCAGCGGCTAGGACCTTGGTGAACTCGGCTGCGCGTGAATGGAAACTGAAGTACCCGACTTCCAAAATGGATGATTGTGCAGTGGTATGTTTGTTTCTGGATGGGAAAATGGATTCTGAGTCGGATTATGATGAACAAGGCTTCTCTTCAGCCACAAATGCTGTAGAATCAGATGATGGCCAAAGATCAGAACCATGTCTCCAAAGAAACTTCACAGTTAGATCATCATCAGATCAAGAAAACGAGACTTATGGTAACGTGAATACAGAGACTGATGCAGAGGATGAGAAAACGGTAGGAGATCAAAACTGGTTGGGTCTACAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGAGATTCTCTGAAGAGAAATCGAAGACTTGA

Protein Analysis

468

Amino Acids

51.85

Weight (kDa)

5.77

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 159 - 350 4.4e-40 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 137, 391
AccB1I GGYRCC 1 cut(s) 793
AccI GTMKAC 3 cut(s) 17, 73, 1336
AccII CGCG 3 cut(s) 799, 1051, 1353
AciI CCGC 3 cut(s) 550, 797, 1022
AclI AACGTT 1 cut(s) 122
AclWI GGATC 4 cut(s) 182, 481, 670, 752
AcoI YGGCCR 3 cut(s) 322, 840, 1195
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 7 cut(s) 297, 374, 734, 984, 1085, 1149, 1407
AcyI GRCGYC 2 cut(s) 246, 1344
AfaI GTAC 3 cut(s) 34, 891, 1070
AfiI CCNNNNNNNGG 2 cut(s) 83, 843
AflIII ACRYGT 2 cut(s) 35, 1351
AgsI TTSAA 2 cut(s) 438, 520
AhlI ACTAGT 1 cut(s) 20
AjnI CCWGG 2 cut(s) 826, 842
AleI CACNNNNGTG 1 cut(s) 1352
AloI GAACNNNNNNTCC 2 cut(s) 1200, 1232
AluBI AGCT 9 cut(s) 45, 201, 449, 461, 512, 737, 998, 1004, 1372
AluI AGCT 9 cut(s) 45, 201, 449, 461, 512, 737, 998, 1004, 1372
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 5 cut(s) 145, 558, 1220, 1256, 1280
AlwI GGATC 4 cut(s) 182, 481, 670, 752
AlwNI CAGNNNCTG 2 cut(s) 893, 1289
Ama87I CYCGRG 2 cut(s) 83, 648
AoxI GGCC 4 cut(s) 322, 651, 840, 1195
ApeKI GCWGC 5 cut(s) 42, 183, 186, 585, 1046
ApoI RAATTY 1 cut(s) 433
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
AseI ATTAAT 1 cut(s) 237
Asp700I GAANNNNTTC 2 cut(s) 124, 433
AspA2I CCTAGG 1 cut(s) 728
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 3 cut(s) 314, 651, 1029
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 4 cut(s) 169, 866, 896, 1048
AvaI CYCGRG 2 cut(s) 83, 648
AvaII GGWCC 2 cut(s) 314, 1029
AvrII CCTAGG 1 cut(s) 728
BaeI ACNNNNGTAYC 2 cut(s) 1052, 1085
BalI TGGCCA 3 cut(s) 324, 842, 1197
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 5 cut(s) 54, 195, 198, 597, 1033
BccI CCATC 6 cut(s) 299, 333, 662, 769, 1112, 1187
BciT130I CCWGG 2 cut(s) 828, 844
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 5 cut(s) 145, 558, 1220, 1256, 1280
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 3 cut(s) 21, 729, 1026
BfmI CTRYAG 1 cut(s) 1179
BisI GCNGC 7 cut(s) 43, 184, 187, 586, 797, 1023, 1047
BlnI CCTAGG 1 cut(s) 728
BlsI GCNGC 7 cut(s) 44, 185, 188, 587, 798, 1024, 1048
Bme1390I CCNGG 3 cut(s) 828, 844, 1013
Bme18I GGWCC 2 cut(s) 314, 1029
BmeT110I CYCGRG 2 cut(s) 83, 648
BmgT120I GGNCC 3 cut(s) 314, 651, 1029
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 3 cut(s) 828, 844, 1013
BmsI GCATC 3 cut(s) 811, 1025, 1282
BoxI GACNNNNGTC 1 cut(s) 861
BpiI GAAGAC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 1013
BsaAI YACGTR 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 1243
BsaHI GRCGYC 2 cut(s) 246, 1344
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 6 cut(s) 534, 658, 728, 837, 843, 1032
BsaXI ACNNNNNCTCC 2 cut(s) 1200, 1230
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 843
Bse1I ACTGG 2 cut(s) 595, 1331
Bse3DI GCAATG 2 cut(s) 58, 353
Bse8I GATNNNNATC 1 cut(s) 1243
BseBI CCWGG 2 cut(s) 828, 844
BseDI CCNNGG 6 cut(s) 534, 658, 728, 837, 843, 1032
BseGI GGATG 6 cut(s) 556, 654, 967, 1093, 1123, 1306
BseJI GATNNNNATC 1 cut(s) 1243
BseLI CCNNNNNNNGG 2 cut(s) 83, 843
BseMI GCAATG 2 cut(s) 58, 353
BseMII CTCAG 3 cut(s) 729, 885, 1125
BseNI ACTGG 2 cut(s) 595, 1331
BseXI GCAGC 5 cut(s) 54, 195, 198, 597, 1033
BsgI GTGCAG 1 cut(s) 1116
Bsh1236I CGCG 3 cut(s) 799, 1051, 1353
BshFI GGCC 4 cut(s) 324, 653, 842, 1197
BshNI GGYRCC 1 cut(s) 793
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 83, 648
BsiSI CCGG 2 cut(s) 719, 1012
BslI CCNNNNNNNGG 2 cut(s) 83, 843
BsmAI GTCTC 5 cut(s) 145, 558, 1220, 1256, 1280
BsnI GGCC 4 cut(s) 324, 653, 842, 1197
Bso31I GGTCTC 1 cut(s) 558
BsoBI CYCGRG 2 cut(s) 83, 648
Bsp1286I GDGCHC 1 cut(s) 203
Bsp19I CCATGG 2 cut(s) 534, 837
BspACI CCGC 3 cut(s) 550, 797, 1022
BspANI GGCC 4 cut(s) 324, 653, 842, 1197
BspCNI CTCAG 3 cut(s) 730, 886, 1126
BspFNI CGCG 3 cut(s) 799, 1051, 1353
BspLI GGNNCC 1 cut(s) 795
BspPI GGATC 4 cut(s) 182, 481, 670, 752
BspT107I GGYRCC 1 cut(s) 793
BspTNI GGTCTC 1 cut(s) 558
BsrDI GCAATG 2 cut(s) 58, 353
BsrI ACTGG 2 cut(s) 595, 1331
BssECI CCNNGG 6 cut(s) 534, 658, 728, 837, 843, 1032
BssNI GRCGYC 2 cut(s) 246, 1344
BssT1I CCWWGG 5 cut(s) 534, 658, 728, 837, 1032
Bst2UI CCWGG 2 cut(s) 828, 844
Bst4CI ACNGT 9 cut(s) 372, 407, 572, 674, 706, 753, 908, 1234, 1312
Bst6I CTCTTC 4 cut(s) 110, 629, 1168, 1383
BstACI GRCGYC 2 cut(s) 246, 1344
BstBAI YACGTR 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 738, 894, 1134
BstDSI CCRYGG 2 cut(s) 534, 837
BstF5I GGATG 6 cut(s) 556, 654, 967, 1093, 1123, 1306
BstFNI CGCG 3 cut(s) 799, 1051, 1353
BstHHI GCGC 1 cut(s) 1051
BstMAI GTCTC 5 cut(s) 145, 558, 1220, 1256, 1280
BstMWI GCNNNNNNNGC 8 cut(s) 48, 192, 591, 793, 805, 1022, 1175, 1350
BstNI CCWGG 2 cut(s) 828, 844
BstPAI GACNNNNGTC 1 cut(s) 861
BstSCI CCNGG 3 cut(s) 826, 842, 1011
BstSFI CTRYAG 1 cut(s) 1179
BstUI CGCG 3 cut(s) 799, 1051, 1353
BstV1I GCAGC 5 cut(s) 54, 195, 198, 597, 1033
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 473
BstYI RGATCY 1 cut(s) 473
BsuRI GGCC 4 cut(s) 324, 653, 842, 1197
BtgI CCRYGG 2 cut(s) 534, 837
BtgZI GCGATG 1 cut(s) 788
BtsCI GGATG 6 cut(s) 556, 654, 967, 1093, 1123, 1306
BtsI GCAGTG 1 cut(s) 1104
BtsIMutI CAGTG 2 cut(s) 588, 1104
CaiI CAGNNNCTG 2 cut(s) 893, 1289
CfoI GCGC 1 cut(s) 1051
Cfr13I GGNCC 3 cut(s) 314, 651, 1029
CseI GACGC 5 cut(s) 59, 234, 254, 394, 1333
Csp6I GTAC 3 cut(s) 33, 890, 1069
CviAII CATG 6 cut(s) 250, 311, 535, 628, 838, 1212
CviQI GTAC 3 cut(s) 33, 890, 1069
DdeI CTNAG 3 cut(s) 738, 894, 1134
DraI TTTAAA 1 cut(s) 529
DrdI GACNNNNNNGTC 2 cut(s) 137, 391
DseDI GACNNNNNNGTC 2 cut(s) 137, 391
EaeI YGGCCR 3 cut(s) 322, 840, 1195
Eam1104I CTCTTC 4 cut(s) 110, 629, 1168, 1383
EarI CTCTTC 4 cut(s) 110, 629, 1168, 1383
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 5 cut(s) 534, 658, 728, 837, 1032
Eco24I GRGCYC 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 314, 1029
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 7 cut(s) 297, 374, 734, 984, 1085, 1149, 1407
Eco88I CYCGRG 2 cut(s) 83, 648
EcoICRI GAGCTC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 1029
EcoRII CCWGG 2 cut(s) 826, 842
EcoT14I CCWWGG 5 cut(s) 534, 658, 728, 837, 1032
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 5 cut(s) 534, 658, 728, 837, 1032
FaeI CATG 6 cut(s) 253, 314, 538, 631, 841, 1215
FatI CATG 6 cut(s) 249, 310, 534, 627, 837, 1211
FblI GTMKAC 3 cut(s) 17, 73, 1336
Fnu4HI GCNGC 7 cut(s) 43, 184, 187, 586, 797, 1023, 1047
FokI GGATG 6 cut(s) 543, 641, 974, 1100, 1130, 1313
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 7 cut(s) 43, 184, 187, 586, 797, 1023, 1047
FspBI CTAG 3 cut(s) 21, 729, 1026
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 7 cut(s) 43, 184, 187, 586, 797, 1023, 1047
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 4 cut(s) 324, 653, 842, 1197
HapII CCGG 2 cut(s) 719, 1012
HgaI GACGC 5 cut(s) 59, 234, 254, 394, 1333
HhaI GCGC 1 cut(s) 1051
Hin1I GRCGYC 2 cut(s) 246, 1344
Hin1II CATG 6 cut(s) 253, 314, 538, 631, 841, 1215
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HincII GTYRAC 3 cut(s) 18, 74, 988
HindII GTYRAC 3 cut(s) 18, 74, 988
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 9 cut(s) 423, 644, 680, 801, 879, 1130, 1136, 1184, 1380
HpaII CCGG 2 cut(s) 719, 1012
HphI GGTGA 4 cut(s) 169, 866, 896, 1048
Hpy166II GTNNAC 7 cut(s) 18, 74, 900, 988, 1039, 1337, 1357
Hpy188III TCNNGA 6 cut(s) 85, 242, 517, 566, 1115, 1253
Hpy8I GTNNAC 7 cut(s) 18, 74, 900, 988, 1039, 1337, 1357
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 9 cut(s) 372, 407, 572, 674, 706, 753, 908, 1234, 1312
HpyCH4IV ACGT 3 cut(s) 35, 122, 1275
HpyCH4V TGCA 5 cut(s) 148, 207, 824, 1097, 1295
HpyF10VI GCNNNNNNNGC 8 cut(s) 48, 192, 591, 793, 805, 1022, 1175, 1350
HpyF3I CTNAG 3 cut(s) 738, 894, 1134
HpySE526I ACGT 3 cut(s) 35, 122, 1275
Hsp92I GRCGYC 2 cut(s) 246, 1344
Hsp92II CATG 6 cut(s) 253, 314, 538, 631, 841, 1215
HspAI GCGC 1 cut(s) 1049
LmnI GCTCC 2 cut(s) 48, 198
Lsp1109I GCAGC 5 cut(s) 54, 195, 198, 597, 1033
LweI GCATC 3 cut(s) 811, 1025, 1282
MaeI CTAG 3 cut(s) 21, 729, 1026
MaeII ACGT 3 cut(s) 35, 122, 1275
MaeIII GTNAC 7 cut(s) 283, 366, 595, 674, 854, 1271, 1345
MboII GAAGA 9 cut(s) 127, 275, 290, 441, 616, 791, 989, 1155, 1400
MflI RGATCY 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 203
MlsI TGGCCA 3 cut(s) 324, 842, 1197
MluCI AATT 3 cut(s) 433, 600, 929
MluI ACGCGT 1 cut(s) 1351
MluNI TGGCCA 3 cut(s) 324, 842, 1197
MlyI GAGTC 3 cut(s) 810, 888, 1145
MmeI TCCRAC 1 cut(s) 1119
MnlI CCTC 5 cut(s) 475, 735, 784, 955, 1291
Mox20I TGGCCA 3 cut(s) 324, 842, 1197
MroXI GAANNNNTTC 2 cut(s) 124, 433
MscI TGGCCA 3 cut(s) 324, 842, 1197
MseI TTAA 6 cut(s) 237, 465, 492, 528, 606, 968
MslI CAYNNNNRTG 2 cut(s) 254, 1352
Msp20I TGGCCA 3 cut(s) 324, 842, 1197
MspA1I CMGCKG 3 cut(s) 45, 449, 1022
MspI CCGG 2 cut(s) 719, 1012
MspR9I CCNGG 3 cut(s) 828, 844, 1013
MvaI CCWGG 2 cut(s) 828, 844
MvnI CGCG 3 cut(s) 799, 1051, 1353
MwoI GCNNNNNNNGC 8 cut(s) 48, 192, 591, 793, 805, 1022, 1175, 1350
NciI CCSGG 1 cut(s) 1013
NcoI CCATGG 2 cut(s) 534, 837
NlaIII CATG 6 cut(s) 253, 314, 538, 631, 841, 1215
NlaIV GGNNCC 1 cut(s) 795
NmeAIII GCCGAG 1 cut(s) 1022
NmuCI GTSAC 3 cut(s) 283, 854, 1345
OliI CACNNNNGTG 1 cut(s) 1352
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PdmI GAANNNNTTC 2 cut(s) 124, 433
PfeI GAWTC 6 cut(s) 423, 644, 680, 1130, 1184, 1380
PkrI GCNGC 7 cut(s) 44, 185, 188, 587, 798, 1024, 1048
PleI GAGTC 3 cut(s) 809, 887, 1144
PpsI GAGTC 3 cut(s) 809, 887, 1144
Ppu21I YACGTR 1 cut(s) 36
PpuMI RGGWCCY 1 cut(s) 1029
PshAI GACNNNNGTC 1 cut(s) 861
PshBI ATTAAT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 203
Psp1406I AACGTT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 1029
Psp6I CCWGG 2 cut(s) 826, 842
PspGI CCWGG 2 cut(s) 826, 842
PspN4I GGNNCC 1 cut(s) 795
PspPI GGNCC 3 cut(s) 314, 651, 1029
PspPPI RGGWCCY 1 cut(s) 1029
PstNI CAGNNNCTG 2 cut(s) 893, 1289
PsuI RGATCY 1 cut(s) 473
PvuII CAGCTG 2 cut(s) 45, 449
RsaI GTAC 3 cut(s) 34, 891, 1070
RsaNI GTAC 3 cut(s) 33, 890, 1069
RseI CAYNNNNRTG 2 cut(s) 254, 1352
SacI GAGCTC 1 cut(s) 203
SalI GTCGAC 2 cut(s) 16, 72
SaqAI TTAA 6 cut(s) 237, 465, 492, 528, 606, 968
SatI GCNGC 7 cut(s) 43, 184, 187, 586, 797, 1023, 1047
Sau96I GGNCC 3 cut(s) 314, 651, 1029
SchI GAGTC 3 cut(s) 810, 888, 1145
ScrFI CCNGG 3 cut(s) 828, 844, 1013
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 3 cut(s) 811, 1025, 1282
SfcI CTRYAG 1 cut(s) 1179
SinI GGWCC 2 cut(s) 314, 1029
SmiMI CAYNNNNRTG 2 cut(s) 254, 1352
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 3 cut(s) 433, 600, 929
SsiI CCGC 3 cut(s) 550, 797, 1022
SspMI CTAG 3 cut(s) 21, 729, 1026
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 3 cut(s) 826, 842, 1011
StyI CCWWGG 5 cut(s) 534, 658, 728, 837, 1032
TaaI ACNGT 9 cut(s) 372, 407, 572, 674, 706, 753, 908, 1234, 1312
TaiI ACGT 3 cut(s) 38, 125, 1278
TaqI TCGA 6 cut(s) 17, 73, 395, 421, 763, 1397
TasI AATT 3 cut(s) 433, 600, 929
TauI GCSGC 2 cut(s) 799, 1025
TfiI GAWTC 6 cut(s) 423, 644, 680, 1130, 1184, 1380
Tru1I TTAA 6 cut(s) 237, 465, 492, 528, 606, 968
Tru9I TTAA 6 cut(s) 237, 465, 492, 528, 606, 968
TscAI CASTG 2 cut(s) 595, 1104
TseFI GTSAC 3 cut(s) 283, 854, 1345
TseI GCWGC 5 cut(s) 42, 183, 186, 585, 1046
Tsp45I GTSAC 3 cut(s) 283, 854, 1345
TspDTI ATGAA 3 cut(s) 616, 922, 1164
TspGWI ACGGA 1 cut(s) 966
TspRI CASTG 2 cut(s) 595, 1104
VpaK11BI GGWCC 2 cut(s) 314, 1029
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 433
XmaJI CCTAGG 1 cut(s) 728
XmiI GTMKAC 3 cut(s) 17, 73, 1336
XmnI GAANNNNTTC 2 cut(s) 124, 433
XspI CTAG 3 cut(s) 21, 729, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.