Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006592

Physical Location & Seq

Genomic Coordinates Forward (+)

62939727 .. 62943078

Gene Structure 3352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0497100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGGATGAAACAAGCCTTAAAGAGCTTGGATGCGTTTCCTCGAGCCGAGGAGCATTTGTTGCAGAAGACTCAATCTGGGGCTTTTGTTTCGGTTGTTGGTTTGCTCATAATGGCGACATTGTTTTTGCACGAGCTGAGATATTATCTTTCATCGTATACTGTTCATCAGATGTCCGTGGACTTGAAGCGCGGCGAGACTCTGCCAATTCACATTAATATGACGTTTCCGTCTCTACCTTGTGATGTCCTGAGTGTGGATGCAATTGATATGTCGGGCAAGCATGAAGTGGATCTTGACACCAATATATGGAAACTTCGCCTTAACAGTCATGGACACATCATCGGCACTGAATATTTGTCTGACCTTGTGGAGAAGGAACATTCGCACAAGCATGATGATGGTAAAGAGCATCACCAGGAAAACCATTTACATGGAGCTTTTGATTTAGCTGCAGAAGAACTGATCAAGAAAGTAAAGAAAGCATTAGATGATGGAGAAGGATGCAGGGTTTATGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCATATATCAGTTCATGGGTTAAACATATTCGTTGCACAAATGATTTTTGAAGGATCTAAAAATGTAAATGTAAGTCACATTATTCATGACTTGTCATTTGGCCCAAAATATCCAGGGATTCACAACCCACTTGACGGAACAGAGCGCATTTTGCATGACACCAGTGGCACATTCAAATATTATATAAAGATTGTTCCAACTGAGTATAGGTATCTCTCAAAGGAAGTTTTGCCAACTAATCAATTCTCTGTGACAGAATATTATTCCCCAATGAAAGAGTATGATAGGTCATGGCCAGCGGTCTACTTCTTGTATGATCTTTCGCCAATTACTGTAACTATCAAAGAAGAACGACGCAAATTTCTTCATTTCATCACTAGGCTTTGTGCAGTATTGGGTGGTACCTTCGCTTTGACAGGAATGCTAGACCGATGGATGTTCAGGTTTGTTGAAGCATTGACTAAACCAAATGCTAGAATTGTATTGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

347

Amino Acids

39.7

Weight (kDa)

6.6

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERGIC_N	PF13850	7 - 96	2e-28	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV	PF07970	153 - 327	2.9e-46	Endoplasmic reticulum vesicle transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03415 AT4G03415 AT4G03415
fragaria_vesca	FvH4_6g45040 FvH4_6g45040 FvH4_6g45040 FvH4_6g45040
malus_domestica	MD17G1079800.v1.1
prunus_persica	Prupe.3G235000_v2.0.a1
pyrus_communis	pycom09g01530 pycom17g07860
rosa_chinensis	RchiOBHm_Chr2g0162371
rosa_laevigata	RLG00000021340
rosa_multiflora	Rmu_sc0004020.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087980
rosa_rugosa	Rorug02G0496900 Rorug02G0497000 Rorug02G0497100 Rorug02G0497200 Rorug02G0497300 Rorug02G0497400 Rorug02G0497400
rosa_samantha	Rh2AG563100 Rh2CG546100 Rh2DG586000
rosa_wichuraiana	Rw2G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
Acc65I	GGTACC	1 cut(s)	953
AccB1I	GGYRCC	1 cut(s)	953
AccB7I	CCANNNNNTGG	1 cut(s)	309
AccI	GTMKAC	2 cut(s)	158, 855
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	192, 851
AclWI	GGATC	2 cut(s)	300, 613
AcoI	YGGCCR	1 cut(s)	845
AcsI	RAATTY	1 cut(s)	911
AfaI	GTAC	1 cut(s)	955
AfiI	CCNNNNNNNGG	3 cut(s)	256, 309, 686
AgsI	TTSAA	4 cut(s)	187, 602, 727, 1004
AjnI	CCWGG	2 cut(s)	417, 664
AluBI	AGCT	4 cut(s)	27, 136, 440, 452
AluI	AGCT	4 cut(s)	27, 136, 440, 452
Alw26I	GTCTC	2 cut(s)	191, 237
AlwI	GGATC	2 cut(s)	300, 613
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	652, 845
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	911
ArsI	GACNNNNNNTTYG	4 cut(s)	109, 141, 632, 664
AseI	ATTAAT	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	953
AspLEI	GCGC	2 cut(s)	192, 699
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	847
BanI	GGYRCC	1 cut(s)	953
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	3 cut(s)	395, 488, 978
BciT130I	CCWGG	2 cut(s)	419, 666
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	191, 237
BfaI	CTAG	3 cut(s)	930, 977, 1026
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	193, 453
BlsI	GCNGC	2 cut(s)	194, 454
Bme1390I	CCNGG	2 cut(s)	419, 666
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	955
BmrFI	CCNGG	2 cut(s)	419, 666
BmsI	GCATC	4 cut(s)	22, 250, 421, 494
BpiI	GAAGAC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	48, 177, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 309, 686
Bse1I	ACTGG	1 cut(s)	714
BseBI	CCWGG	2 cut(s)	419, 666
BseDI	CCNNGG	3 cut(s)	48, 177, 665
BseGI	GGATG	5 cut(s)	12, 37, 265, 509, 993
BseLI	CCNNNNNNNGG	3 cut(s)	256, 309, 686
BseMII	CTCAG	3 cut(s)	128, 242, 744
BseNI	ACTGG	1 cut(s)	714
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	654, 847
BshNI	GGYRCC	1 cut(s)	953
BsiHKCI	CYCGRG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	256, 309, 686
BsmAI	GTCTC	2 cut(s)	191, 237
BsmBI	CGTCTC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	978
BsnI	GGCC	2 cut(s)	654, 847
BsoBI	CYCGRG	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	292, 465, 605, 868
BspACI	CCGC	2 cut(s)	192, 851
BspANI	GGCC	2 cut(s)	654, 847
BspCNI	CTCAG	3 cut(s)	129, 243, 745
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	955
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	2 cut(s)	300, 613
BspT107I	GGYRCC	1 cut(s)	953
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	3 cut(s)	48, 177, 665
BssMI	GATC	4 cut(s)	292, 465, 605, 868
BssNAI	GTATAC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	131
Bst1107I	GTATAC	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	419, 666
Bst4CI	ACNGT	3 cut(s)	163, 329, 886
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	281, 849
BstDEI	CTNAG	3 cut(s)	137, 251, 753
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	5 cut(s)	12, 37, 265, 509, 993
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	192, 699
BstKTI	GATC	4 cut(s)	295, 468, 608, 871
BstMAI	GTCTC	2 cut(s)	191, 237
BstMBI	GATC	4 cut(s)	292, 465, 605, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 703
BstNI	CCWGG	2 cut(s)	419, 666
BstSCI	CCNGG	2 cut(s)	417, 664
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	292, 605
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	2 cut(s)	292, 605
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	654, 847
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	12, 37, 265, 509, 993
BtsIMutI	CAGTG	2 cut(s)	348, 721
Cac8I	GCNNGC	2 cut(s)	281, 849
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	192, 699
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	915
Csp6I	GTAC	1 cut(s)	954
CviAII	CATG	8 cut(s)	284, 332, 395, 434, 566, 638, 707, 843
CviQI	GTAC	1 cut(s)	954
DdeI	CTNAG	3 cut(s)	137, 251, 753
DpnI	GATC	4 cut(s)	294, 467, 607, 870
DpnII	GATC	4 cut(s)	292, 465, 605, 868
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	845
Eco88I	CYCGRG	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	417, 664
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	8 cut(s)	287, 335, 398, 437, 569, 641, 710, 846
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	8 cut(s)	283, 331, 394, 433, 565, 637, 706, 842
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	2 cut(s)	158, 855
Fnu4HI	GCNGC	2 cut(s)	193, 453
FokI	GGATG	5 cut(s)	19, 44, 272, 516, 1000
Fsp4HI	GCNGC	2 cut(s)	193, 453
FspBI	CTAG	3 cut(s)	930, 977, 1026
GlaI	GCGC	2 cut(s)	191, 698
GluI	GCNGC	2 cut(s)	193, 453
HaeIII	GGCC	2 cut(s)	654, 847
HgaI	GACGC	1 cut(s)	915
HhaI	GCGC	2 cut(s)	192, 699
Hin1II	CATG	8 cut(s)	287, 335, 398, 437, 569, 641, 710, 846
Hin6I	GCGC	2 cut(s)	190, 697
HinP1I	GCGC	2 cut(s)	190, 697
HinfI	GANTC	3 cut(s)	70, 199, 670
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	3 cut(s)	159, 181, 856
Hpy188I	TCNGA	2 cut(s)	171, 364
Hpy188III	TCNNGA	4 cut(s)	250, 296, 469, 638
Hpy8I	GTNNAC	3 cut(s)	159, 181, 856
Hpy99I	CGWCG	1 cut(s)	909
HpyAV	CCTTC	4 cut(s)	370, 494, 596, 967
HpyCH4III	ACNGT	3 cut(s)	163, 329, 886
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	8 cut(s)	64, 130, 263, 455, 507, 587, 706, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 703
HpyF3I	CTNAG	3 cut(s)	137, 251, 753
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	8 cut(s)	287, 335, 398, 437, 569, 641, 710, 846
HspAI	GCGC	2 cut(s)	190, 697
KpnI	GGTACC	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	292, 465, 605, 868
LmnI	GCTCC	2 cut(s)	52, 437
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	4 cut(s)	22, 250, 421, 494
MaeI	CTAG	3 cut(s)	930, 977, 1026
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	626, 802, 886
MalI	GATC	4 cut(s)	294, 467, 607, 870
MboI	GATC	4 cut(s)	292, 465, 605, 868
MboII	GAAGA	4 cut(s)	79, 470, 908, 911
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	292, 605
MlsI	TGGCCA	1 cut(s)	847
MluCI	AATT	6 cut(s)	207, 264, 794, 879, 911, 1029
MluNI	TGGCCA	1 cut(s)	847
MlyI	GAGTC	2 cut(s)	64, 193
MmeI	TCCRAC	1 cut(s)	773
MnlI	CCTC	2 cut(s)	43, 51
Mox20I	TGGCCA	1 cut(s)	847
MscI	TGGCCA	1 cut(s)	847
MseI	TTAA	4 cut(s)	20, 216, 324, 572
MslI	CAYNNNNRTG	4 cut(s)	218, 393, 399, 432
Msp20I	TGGCCA	1 cut(s)	847
MspA1I	CMGCKG	1 cut(s)	851
MspR9I	CCNGG	2 cut(s)	419, 666
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	978
MvaI	CCWGG	2 cut(s)	419, 666
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	61, 703
NdeII	GATC	4 cut(s)	292, 465, 605, 868
NlaIII	CATG	8 cut(s)	287, 335, 398, 437, 569, 641, 710, 846
NlaIV	GGNNCC	1 cut(s)	955
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	626, 802
PaeR7I	CTCGAG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	637
PctI	GAATGC	1 cut(s)	978
PfeI	GAWTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	194, 454
PleI	GAGTC	2 cut(s)	64, 193
PpsI	GAGTC	2 cut(s)	64, 193
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	417, 664
PspGI	CCWGG	2 cut(s)	417, 664
PspN4I	GGNNCC	1 cut(s)	955
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	292, 605
RsaI	GTAC	1 cut(s)	955
RsaNI	GTAC	1 cut(s)	954
RseI	CAYNNNNRTG	4 cut(s)	218, 393, 399, 432
SaqAI	TTAA	4 cut(s)	20, 216, 324, 572
SatI	GCNGC	2 cut(s)	193, 453
Sau3AI	GATC	4 cut(s)	292, 465, 605, 868
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	2 cut(s)	64, 193
ScrFI	CCNGG	2 cut(s)	419, 666
SfaNI	GCATC	4 cut(s)	22, 250, 421, 494
SfcI	CTRYAG	1 cut(s)	453
Sfr274I	CTCGAG	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	4 cut(s)	218, 393, 399, 432
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	6 cut(s)	207, 264, 794, 879, 911, 1029
SsiI	CCGC	2 cut(s)	192, 851
SspI	AATATT	3 cut(s)	356, 731, 812
SspMI	CTAG	3 cut(s)	930, 977, 1026
StyD4I	CCNGG	2 cut(s)	417, 664
TaaI	ACNGT	3 cut(s)	163, 329, 886
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	43
TaqII	GACCGA	1 cut(s)	996
TasI	AATT	6 cut(s)	207, 264, 794, 879, 911, 1029
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	4 cut(s)	20, 216, 324, 572
Tru9I	TTAA	4 cut(s)	20, 216, 324, 572
TscAI	CASTG	2 cut(s)	355, 721
TseFI	GTSAC	2 cut(s)	626, 802
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	626, 802
TspGWI	ACGGA	3 cut(s)	166, 219, 702
TspRI	CASTG	2 cut(s)	355, 721
Van91I	CCANNNNNTGG	1 cut(s)	309
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	1 cut(s)	911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	42
XmiI	GTMKAC	2 cut(s)	158, 855
XspI	CTAG	3 cut(s)	930, 977, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.