Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006592

Physical Location & Seq

Genomic Coordinates Forward (+)

62939363 .. 62939697

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0497000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCCGCGGGCTCACGAGAAGACCCCACGGAAGCGCGCACAGAGTATCCCAGCTCCGAACTATAAAGCCGGCAAAGGTAGTCCAACAGCTACAATTCCGACTTCCGTGTTTGGTCTTCGCCCCGCAAAATTCTCTCCTTGTTCGCCGATTCGTTCATATACACCTTCAGGTTTAGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

60

Amino Acids

6.4

Weight (kDa)

10.68

Isoelectric Point (pI)

66.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03415 AT4G03415 AT4G03415
fragaria_vesca	FvH4_6g45040 FvH4_6g45040 FvH4_6g45040 FvH4_6g45040
malus_domestica	MD17G1079800.v1.1
prunus_persica	Prupe.3G235000_v2.0.a1
pyrus_communis	pycom09g01530 pycom17g07860
rosa_chinensis	RchiOBHm_Chr2g0162371
rosa_laevigata	RLG00000021340
rosa_multiflora	Rmu_sc0004020.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087980
rosa_rugosa	Rorug02G0496900 Rorug02G0497000 Rorug02G0497100 Rorug02G0497200 Rorug02G0497300 Rorug02G0497400 Rorug02G0497400
rosa_samantha	Rh2AG563100 Rh2CG546100 Rh2DG586000
rosa_wichuraiana	Rw2G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	7, 36
AciI	CCGC	3 cut(s)	5, 7, 123
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	53, 89
AluI	AGCT	2 cut(s)	53, 89
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	36, 38
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	2 cut(s)	26, 107
BciVI	GTATCC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	26, 107
BsaJI	CCNNGG	2 cut(s)	5, 26
Bse118I	RCCGGY	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	5, 26
BsePI	GCGCGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	7, 36
BsiSI	CCGG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	13
BspACI	CCGC	3 cut(s)	5, 7, 123
BspFNI	CGCG	2 cut(s)	7, 36
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	5, 26
BssHII	GCGCGC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	9, 36, 70
BstDSI	CCRYGG	2 cut(s)	5, 26
BstFNI	CGCG	2 cut(s)	7, 36
BstHHI	GCGC	2 cut(s)	36, 38
BstUI	CGCG	2 cut(s)	7, 36
BstV2I	GAAGAC	2 cut(s)	26, 107
BsuI	GTATCC	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	5, 26
Cac8I	GCNNGC	3 cut(s)	9, 36, 70
CfoI	GCGC	2 cut(s)	36, 38
Cfr10I	RCCGGY	1 cut(s)	68
Cfr42I	CCGCGG	1 cut(s)	8
CviJI	RGCY	4 cut(s)	11, 53, 68, 89
CviKI_1	RGCY	4 cut(s)	11, 53, 68, 89
Eco24I	GRGCYC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	13
FaiI	YATR	3 cut(s)	63, 157, 159
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	2 cut(s)	35, 37
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	36, 38
Hin6I	GCGC	2 cut(s)	34, 36
HinP1I	GCGC	2 cut(s)	34, 36
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	57, 99
Hpy188III	TCNNGA	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	174
HspAI	GCGC	2 cut(s)	34, 36
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
KspI	CCGCGG	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	63, 82, 153
MboII	GAAGA	2 cut(s)	31, 107
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	93, 128
MmeI	TCCRAC	2 cut(s)	107, 122
MroNI	GCCGGC	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	2 cut(s)	7, 36
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
PauI	GCGCGC	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	49
PteI	GCGCGC	1 cut(s)	34
SacII	CCGCGG	1 cut(s)	8
SatI	GCNGC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	6 cut(s)	55, 79, 91, 166, 172, 178
Sfr303I	CCGCGG	1 cut(s)	8
SgrBI	CCGCGG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	93, 128
SsiI	CCGC	3 cut(s)	5, 7, 123
TasI	AATT	2 cut(s)	93, 128
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	2 cut(s)	43, 94
XapI	RAATTY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.