FvH4_6g45040

phosphatase 2c

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
34588416 .. 34592865
4450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45040.t4

Sequence Viewer

Length: 1422 bp
ATGGGGGCTTGTGTTTCGACTAGTAATAAGAGGACTTGCAGTAGCAGAAACAATGGAGAGACTCTTTCTCCTTCGTGCTTGGGGATTGGATTCTCTGGGAAAAAGAGAACAAAGACATTCTCAGACCGCGTATATACCCTGCAGAATTTACATTCCATACCCAACCGTATTTTTACCAATGGAAAGAGCAAAACGTCATGCGTCTTCACGCAGCAGGGCCGGAAAGGCATAAACCAGGATGCCATGATAGTGTGGGAAGACTTCATGTCAGAAGATGCGATATTTTGTGGTGTGTTTGATGGCCACGGTCCACATGGTCATCTTGTTGCTCGCAAAGTAAGGGATGCATTGCCATTGAAGCTGCTGTCCTTCTTGAATTCTTCTCCATCAAGGTCAAATGTGTCAAGTAAAACATGTTTTGGAGGGAATGTAAAGAAACTAGACGATGGAGAAACTGAGAAGGGTGCTTCACCTGAGGAGAAATTAAATCTAGAATGGAGAGAAGCTTTCATGAAGTCATACAAGTCCATGGACAAAGAGCTTAGGTCTCATCCGAATGTAGACTGCTTCTGTAGTGGTAGCACTGCTGTCACTCTAGTCAAACAGGGGTCAAATCTTTTCATGGGTTATATTGGGGATTCCCGAGCAATCCTTGGATCAAAAGACAGTAGCGATTCCATGATAGCAATCCAGTTAACTGTTGATCTAAAGCCTGATCTGCCAAGGGAAGCTGAAAGGATTAAACGATGCAAGGGTAGGGTGTTTGCTTTGCAAGATGAGCCTGAAGTATCTCGAGTGTGGTTGCCTTTTGACGATGCTCCTGGGCTAGCAATGGCTCGAGCCTTTGGAGATTTCTGTTTGAAGGAGTATGGAGTGATCTCCATACCTGAATTTGCTCACAGGATACTTACAGAGAGAGACCAGTTCATTGTCCTTGCCTCAGATGGGGTTTGGGATGTCTTGAGCAATGAAGAGGTTGTTGAGATAGTGTCCTCAGCTCCAAGCCGGTCAGCAGCTTCAAGATTTGTGGTAGACGCAGCTGCTCGTGAATGGAAACTTAAATACCCCACGTCAAAGATGGACGATTGTGCAGTTGTTTGCTTGTTTTTAGATGGGAAAATGGACTCAGAATCTGACTACGAGGAACAAGGCTTTTCATCTGCAACCCTCCAGAGTAATCACTCCGGCAATGCAGTTGAATCTGATGATGGCCAGAAATCTGAGCCCACTTTGCAGAGGAATTGCACTGTGAGATCATCTGATGAAAGTGATACTTATGGACGACTAAATGTTGATAATGAAGGGAATTTCGAACCAATGTCAACTGAAGACCAGAACTGGTTAGGGTTAGAAGGTGTCACGCGCGTGAACTCCCTTGTTCAGCTTCCAAGATTCTCTGAGGAAAGGCCAATTCATGTATGA

Protein Analysis

474

Amino Acids

52.34

Weight (kDa)

5.49

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 226 - 374 5e-30 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 561, 1032
AccII CGCG 3 cut(s) 129, 1363, 1365
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 664
AcoI YGGCCR 2 cut(s) 301, 1210
AcsI RAATTY 4 cut(s) 145, 376, 890, 1306
AcuI CTGAAG 2 cut(s) 804, 1347
AfiI CCNNNNNNNGG 1 cut(s) 945
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 5 cut(s) 358, 376, 862, 1020, 1199
AhdI GACNNNNNGTC 1 cut(s) 265
AhlI ACTAGT 1 cut(s) 20
AjiI CACGTC 1 cut(s) 1071
AjnI CCWGG 2 cut(s) 234, 820
AleI CACNNNNGTG 1 cut(s) 1364
AluBI AGCT 8 cut(s) 361, 506, 541, 731, 998, 1016, 1040, 1384
AluI AGCT 8 cut(s) 361, 506, 541, 731, 998, 1016, 1040, 1384
Alw26I GTCTC 3 cut(s) 53, 552, 912
AlwI GGATC 1 cut(s) 664
AlwNI CAGNNNCTG 1 cut(s) 1133
Ama87I CYCGRG 3 cut(s) 642, 792, 837
AoxI GGCC 4 cut(s) 217, 301, 1210, 1406
ApeKI GCWGC 5 cut(s) 211, 361, 1013, 1037, 1040
ApoI RAATTY 4 cut(s) 145, 376, 890, 1306
AspLEI GCGC 1 cut(s) 1365
AspS9I GGNCC 2 cut(s) 217, 308
AsuHPI GGTGA 1 cut(s) 462
AsuII TTCGAA 1 cut(s) 1311
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 3 cut(s) 642, 792, 837
AvaII GGWCC 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 474
BalI TGGCCA 2 cut(s) 303, 1212
BanII GRGCYC 1 cut(s) 1227
BauI CACGAG 1 cut(s) 1044
BbsI GAAGAC 3 cut(s) 196, 264, 1335
BbvCI CCTCAGC 1 cut(s) 994
BbvI GCAGC 5 cut(s) 223, 348, 1025, 1027, 1049
BccI CCATC 7 cut(s) 293, 394, 440, 938, 1072, 1106, 1202
BciT130I CCWGG 2 cut(s) 236, 822
BciVI GTATCC 1 cut(s) 897
BcoDI GTCTC 3 cut(s) 53, 552, 912
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 5 cut(s) 21, 440, 491, 596, 827
BfmI CTRYAG 2 cut(s) 140, 571
BfuI GTATCC 1 cut(s) 897
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 5 cut(s) 212, 362, 1014, 1038, 1041
BlsI GCNGC 5 cut(s) 213, 363, 1015, 1039, 1042
Bme1390I CCNGG 2 cut(s) 236, 822
Bme18I GGWCC 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 3 cut(s) 642, 792, 837
BmgBI CACGTC 1 cut(s) 1071
BmgT120I GGNCC 2 cut(s) 217, 308
BmrFI CCNGG 2 cut(s) 236, 822
BmsI GCATC 5 cut(s) 229, 265, 334, 737, 805
BmtI GCTAGC 1 cut(s) 830
BpiI GAAGAC 3 cut(s) 196, 264, 1335
BpmI CTGGAG 1 cut(s) 1154
Bpu10I CCTNAGC 2 cut(s) 542, 994
Bpu14I TTCGAA 1 cut(s) 1311
BpuEI CTTGAG 1 cut(s) 982
BsaBI GATNNNNATC 1 cut(s) 686
BsaI GGTCTC 2 cut(s) 552, 912
BsaJI CCNNGG 5 cut(s) 304, 528, 652, 722, 821
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 945
Bse118I RCCGGY 1 cut(s) 1005
Bse1I ACTGG 3 cut(s) 691, 922, 1343
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 4 cut(s) 347, 837, 973, 1195
Bse8I GATNNNNATC 1 cut(s) 686
BseBI CCWGG 2 cut(s) 236, 822
BseDI CCNNGG 5 cut(s) 304, 528, 652, 722, 821
BseGI GGATG 4 cut(s) 244, 349, 550, 961
BseJI GATNNNNATC 1 cut(s) 686
BseLI CCNNNNNNNGG 1 cut(s) 945
BseMI GCAATG 4 cut(s) 347, 837, 973, 1195
BseMII CTCAG 8 cut(s) 135, 447, 465, 954, 1008, 1140, 1212, 1389
BseNI ACTGG 3 cut(s) 691, 922, 1343
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 5 cut(s) 223, 348, 1025, 1027, 1049
BsgI GTGCAG 1 cut(s) 1110
Bsh1236I CGCG 3 cut(s) 129, 1363, 1365
BshFI GGCC 4 cut(s) 219, 303, 1212, 1408
BsiHKCI CYCGRG 3 cut(s) 642, 792, 837
BsiSI CCGG 3 cut(s) 220, 1006, 1185
BslI CCNNNNNNNGG 1 cut(s) 945
BsmAI GTCTC 3 cut(s) 53, 552, 912
BsnI GGCC 4 cut(s) 219, 303, 1212, 1408
Bso31I GGTCTC 2 cut(s) 552, 912
BsoBI CYCGRG 3 cut(s) 642, 792, 837
Bsp119I TTCGAA 1 cut(s) 1311
Bsp1286I GDGCHC 1 cut(s) 1227
Bsp143I GATC 5 cut(s) 656, 703, 715, 876, 1253
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 1 cut(s) 127
BspANI GGCC 4 cut(s) 219, 303, 1212, 1408
BspCNI CTCAG 8 cut(s) 134, 448, 466, 953, 1007, 1139, 1213, 1390
BspFNI CGCG 3 cut(s) 129, 1363, 1365
BspHI TCATGA 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 1 cut(s) 664
BspT104I TTCGAA 1 cut(s) 1311
BspTNI GGTCTC 2 cut(s) 552, 912
BsrDI GCAATG 4 cut(s) 347, 837, 973, 1195
BsrFI RCCGGY 1 cut(s) 1005
BsrI ACTGG 3 cut(s) 691, 922, 1343
BssAI RCCGGY 1 cut(s) 1005
BssECI CCNNGG 5 cut(s) 304, 528, 652, 722, 821
BssMI GATC 5 cut(s) 656, 703, 715, 876, 1253
BssSI CACGAG 1 cut(s) 1044
BssT1I CCWWGG 3 cut(s) 528, 652, 722
Bst2BI CACGAG 1 cut(s) 1044
Bst2UI CCWGG 2 cut(s) 236, 822
Bst4CI ACNGT 5 cut(s) 167, 308, 668, 700, 1249
Bst6I CTCTTC 1 cut(s) 966
BstBI TTCGAA 1 cut(s) 1311
BstC8I GCNNGC 2 cut(s) 331, 828
BstDEI CTNAG 9 cut(s) 121, 456, 474, 542, 940, 994, 1126, 1221, 1398
BstDSI CCRYGG 2 cut(s) 304, 528
BstF5I GGATG 4 cut(s) 244, 349, 550, 961
BstFNI CGCG 3 cut(s) 129, 1363, 1365
BstHHI GCGC 1 cut(s) 1365
BstKTI GATC 5 cut(s) 659, 706, 718, 879, 1256
BstMAI GTCTC 3 cut(s) 53, 552, 912
BstMBI GATC 5 cut(s) 656, 703, 715, 876, 1253
BstMWI GCNNNNNNNGC 5 cut(s) 225, 358, 718, 778, 1231
BstNI CCWGG 2 cut(s) 236, 822
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 2 cut(s) 234, 820
BstSFI CTRYAG 2 cut(s) 140, 571
BstUI CGCG 3 cut(s) 129, 1363, 1365
BstV1I GCAGC 5 cut(s) 223, 348, 1025, 1027, 1049
BstV2I GAAGAC 3 cut(s) 196, 264, 1335
Bsu36I CCTNAGG 1 cut(s) 474
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 4 cut(s) 219, 303, 1212, 1408
BtgI CCRYGG 2 cut(s) 304, 528
BtrI CACGTC 1 cut(s) 1071
BtsCI GGATG 4 cut(s) 244, 349, 550, 961
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 582, 1245
Cac8I GCNNGC 2 cut(s) 331, 828
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 510
CfoI GCGC 1 cut(s) 1365
Cfr10I RCCGGY 1 cut(s) 1005
Cfr13I GGNCC 2 cut(s) 217, 308
CseI GACGC 2 cut(s) 190, 1043
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
DdeI CTNAG 9 cut(s) 121, 456, 474, 542, 940, 994, 1126, 1221, 1398
DpnI GATC 5 cut(s) 658, 705, 717, 878, 1255
DpnII GATC 5 cut(s) 656, 703, 715, 876, 1253
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 301, 1210
Eam1104I CTCTTC 1 cut(s) 966
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 966
Eco130I CCWWGG 3 cut(s) 528, 652, 722
Eco24I GRGCYC 1 cut(s) 1227
Eco31I GGTCTC 2 cut(s) 552, 912
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 804, 1347
Eco81I CCTNAGG 1 cut(s) 474
Eco88I CYCGRG 3 cut(s) 642, 792, 837
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 234, 820
EcoT14I CCWWGG 3 cut(s) 528, 652, 722
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 1227
ErhI CCWWGG 3 cut(s) 528, 652, 722
FalI AAGNNNNNCTT 2 cut(s) 1258, 1290
FblI GTMKAC 2 cut(s) 561, 1032
Fnu4HI GCNGC 5 cut(s) 212, 362, 1014, 1038, 1041
FokI GGATG 4 cut(s) 251, 356, 537, 968
FriOI GRGCYC 1 cut(s) 1227
Fsp4HI GCNGC 5 cut(s) 212, 362, 1014, 1038, 1041
FspBI CTAG 5 cut(s) 21, 440, 491, 596, 827
GlaI GCGC 1 cut(s) 1364
GluI GCNGC 5 cut(s) 212, 362, 1014, 1038, 1041
GsuI CTGGAG 1 cut(s) 1154
HaeIII GGCC 4 cut(s) 219, 303, 1212, 1408
HapII CCGG 3 cut(s) 220, 1006, 1185
HgaI GACGC 2 cut(s) 190, 1043
HhaI GCGC 1 cut(s) 1365
Hin6I GCGC 1 cut(s) 1363
HinP1I GCGC 1 cut(s) 1363
HincII GTYRAC 2 cut(s) 696, 1323
HindII GTYRAC 2 cut(s) 696, 1323
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 8 cut(s) 61, 90, 638, 674, 1124, 1130, 1199, 1392
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 3 cut(s) 220, 1006, 1185
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 6 cut(s) 311, 562, 696, 1033, 1323, 1369
Hpy188III TCNNGA 9 cut(s) 373, 491, 511, 642, 792, 961, 1020, 1046, 1171
Hpy8I GTNNAC 6 cut(s) 311, 562, 696, 1033, 1323, 1369
HpyAV CCTTC 6 cut(s) 81, 379, 454, 856, 1295, 1346
HpyCH4III ACNGT 5 cut(s) 167, 308, 668, 700, 1249
HpyCH4IV ACGT 2 cut(s) 194, 1070
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 358, 718, 778, 1231
HpyF3I CTNAG 9 cut(s) 121, 456, 474, 542, 940, 994, 1126, 1221, 1398
HpySE526I ACGT 2 cut(s) 194, 1070
HspAI GCGC 1 cut(s) 1363
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 5 cut(s) 656, 703, 715, 876, 1253
LmnI GCTCC 2 cut(s) 823, 1003
Lsp1109I GCAGC 5 cut(s) 223, 348, 1025, 1027, 1049
LweI GCATC 5 cut(s) 229, 265, 334, 737, 805
MaeI CTAG 5 cut(s) 21, 440, 491, 596, 827
MaeII ACGT 2 cut(s) 194, 1070
MaeIII GTNAC 2 cut(s) 589, 1357
MalI GATC 5 cut(s) 658, 705, 717, 878, 1255
MboI GATC 5 cut(s) 656, 703, 715, 876, 1253
MboII GAAGA 6 cut(s) 196, 269, 284, 372, 983, 1340
MhlI GDGCHC 1 cut(s) 1227
MlsI TGGCCA 2 cut(s) 303, 1212
MluCI AATT 7 cut(s) 145, 376, 482, 890, 1240, 1306, 1410
MluNI TGGCCA 2 cut(s) 303, 1212
MlyI GAGTC 2 cut(s) 55, 1118
Mox20I TGGCCA 2 cut(s) 303, 1212
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 2 cut(s) 303, 1212
MseI TTAA 4 cut(s) 485, 695, 741, 1059
MslI CAYNNNNRTG 3 cut(s) 248, 555, 1364
Msp20I TGGCCA 2 cut(s) 303, 1212
MspA1I CMGCKG 1 cut(s) 1040
MspI CCGG 3 cut(s) 220, 1006, 1185
MspR9I CCNGG 2 cut(s) 236, 822
MvaI CCWGG 2 cut(s) 236, 822
MvnI CGCG 3 cut(s) 129, 1363, 1365
MwoI GCNNNNNNNGC 5 cut(s) 225, 358, 718, 778, 1231
NcoI CCATGG 1 cut(s) 528
NdeII GATC 5 cut(s) 656, 703, 715, 876, 1253
NheI GCTAGC 1 cut(s) 826
NmuCI GTSAC 2 cut(s) 589, 1357
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 417
NspV TTCGAA 1 cut(s) 1311
OliI CACNNNNGTG 1 cut(s) 1364
PaeR7I CTCGAG 2 cut(s) 792, 837
PagI TCATGA 1 cut(s) 510
PciI ACATGT 1 cut(s) 413
PfeI GAWTC 6 cut(s) 90, 638, 674, 1130, 1199, 1392
PkrI GCNGC 5 cut(s) 213, 363, 1015, 1039, 1042
PleI GAGTC 2 cut(s) 55, 1118
PpsI GAGTC 2 cut(s) 55, 1118
PscI ACATGT 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 234, 820
PspGI CCWGG 2 cut(s) 234, 820
PspPI GGNCC 2 cut(s) 217, 308
PspXI VCTCGAGB 1 cut(s) 837
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1040
RseI CAYNNNNRTG 3 cut(s) 248, 555, 1364
SaqAI TTAA 4 cut(s) 485, 695, 741, 1059
SatI GCNGC 5 cut(s) 212, 362, 1014, 1038, 1041
Sau3AI GATC 5 cut(s) 656, 703, 715, 876, 1253
Sau96I GGNCC 2 cut(s) 217, 308
SchI GAGTC 2 cut(s) 55, 1118
ScrFI CCNGG 2 cut(s) 236, 822
SduI GDGCHC 1 cut(s) 1227
SfaNI GCATC 5 cut(s) 229, 265, 334, 737, 805
SfcI CTRYAG 2 cut(s) 140, 571
Sfr274I CTCGAG 2 cut(s) 792, 837
SfuI TTCGAA 1 cut(s) 1311
SinI GGWCC 1 cut(s) 308
SlaI CTCGAG 2 cut(s) 792, 837
SmiMI CAYNNNNRTG 3 cut(s) 248, 555, 1364
SmlI CTYRAG 3 cut(s) 792, 837, 961
SmoI CTYRAG 3 cut(s) 792, 837, 961
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 7 cut(s) 145, 376, 482, 890, 1240, 1306, 1410
SsiI CCGC 1 cut(s) 127
SspMI CTAG 5 cut(s) 21, 440, 491, 596, 827
StyD4I CCNGG 2 cut(s) 234, 820
StyI CCWWGG 3 cut(s) 528, 652, 722
TaaI ACNGT 5 cut(s) 167, 308, 668, 700, 1249
TaiI ACGT 2 cut(s) 197, 1073
TaqI TCGA 4 cut(s) 17, 793, 838, 1311
TasI AATT 7 cut(s) 145, 376, 482, 890, 1240, 1306, 1410
TfiI GAWTC 6 cut(s) 90, 638, 674, 1130, 1199, 1392
Tru1I TTAA 4 cut(s) 485, 695, 741, 1059
Tru9I TTAA 4 cut(s) 485, 695, 741, 1059
TscAI CASTG 2 cut(s) 589, 1252
TseFI GTSAC 2 cut(s) 589, 1357
TseI GCWGC 5 cut(s) 211, 361, 1013, 1037, 1040
Tsp45I GTSAC 2 cut(s) 589, 1357
TspRI CASTG 2 cut(s) 589, 1252
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 4 cut(s) 145, 376, 890, 1306
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 2 cut(s) 311, 1075
XhoI CTCGAG 2 cut(s) 792, 837
XmiI GTMKAC 2 cut(s) 561, 1032
XspI CTAG 5 cut(s) 21, 440, 491, 596, 827
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.