AT4G03620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013297
Physical Location & Seq
Reverse (-)
1606702 .. 1608665
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03620.1

Sequence Viewer

Length: 1029 bp
ATGCCATGGTCTGCACACTTTCTGAGCGTTTTCAAGTATCTCAACCACGCCAAGACGGTGGAGGATGGACGCCGCGGCGTTTCTGAACCGGAAAACATGAGCCGTCTCCGAGCATTTTCTGCGCCGGATTTAGTCCCTTCAGATTCTGGATCTATTACATCATCACCAACAAGAACCATAGAGCACCAATCTCATGAAGATTCTGGTTTGGAAGGAATCACTACGAACGTGAAGCTACTGCTGAAACTCGTTCAAGATCACAACGAAGCAACATCGAGGCACCACGATGATTGGAAAGTTCAGAGAGTCAACACTATGATGACGATTCTCGATGATCTAAAGACACGAATCCAGAAAGCTCAACAACAATCATCATCTGGGAAAAAAGAGCTTAGACGATGCTACACCGATCTGAAACGGAGTCCTGATCTAACCAAGAGTCCAACAAAGCCACCACAGAACGATCCTGAAGATATTCAGAAACTGAGAAAAGAGTTAAGCGCGAGTATGGCTGCAAGAAAGAGTCTTCAAATGATGTGTTCAAGTTTAGGGAAGGAGAAAGAGATAATGGCTTTGGAGCTTTCGAGGAAAGCTCACGAATTAAACGAAATGGAGGAGCTTGTAAGTGATTTTAGGGCTCAAAATGAGAAATTACTTAAGAAAGTGCAGAATTGCGCGGTAGAGCATAATAAGGAGAAGAAAGAAGATATTGATGGTCCAGGTCCAGGAGACAACAATGTGCCTCTACAGGGAAGAAACAAAGAGTTGTCTGAACAGCTACTCAAATCTATTGACGGATACCGATCTCTGAAAAGGAAATACAAAGATGTTCAAGACGAAAATGGATCAATGAGACGAGCGCTTAGAGATTATGCAGAAGGAGTGAATGTTGGGACTCAGAGACTAACCAAGTTGCATGAAAAGATCACAAGAGAAGATGAAGTGAATATTGAGAATGAGATTTCAAATTTAGAGAAGTTGTTTCAAGGGCTTGGTTTAAAGATTTTGAATCATTCCCAGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

39.0

Weight (kDa)

8.73

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03620 AT4G03620
fragaria_vesca FvH4_3g09520 FvH4_3g09520
malus_domestica MD05G1060100.v1.1 MD10G1256000.v1.1
prunus_persica Prupe.4G087600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0015101
rosa_laevigata RLG00000032170
rosa_multiflora Rmu_sc0002209.1_g000004
rosa_roxburghii Rroxscaffold_1G00061430
rosa_rugosa Rorug05G0024300 Rorug05G0024300
rosa_samantha Rh5AG118700 Rh5BG116600 Rh5CG127700 Rh5DG115600
rosa_wichuraiana Rw5G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AccII CGCG 3 cut(s) 75, 503, 677
AciI CCGC 3 cut(s) 73, 75, 677
AclWI GGATC 3 cut(s) 157, 458, 853
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 2 cut(s) 123, 489
AcyI GRCGYC 1 cut(s) 70
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 725, 749
AflII CTTAAG 1 cut(s) 656
AgsI TTSAA 8 cut(s) 34, 254, 530, 543, 833, 966, 986, 1009
AjnI CCWGG 2 cut(s) 718, 724
AluBI AGCT 7 cut(s) 235, 359, 391, 580, 593, 619, 778
AluI AGCT 7 cut(s) 235, 359, 391, 580, 593, 619, 778
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 4 cut(s) 110, 723, 847, 895
AlwI GGATC 3 cut(s) 157, 458, 853
AlwNI CAGNNNCTG 2 cut(s) 146, 484
Aor51HI AGCGCT 1 cut(s) 861
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 967
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 4 cut(s) 124, 503, 677, 862
AspS9I GGNCC 2 cut(s) 716, 722
AsuHPI GGTGA 1 cut(s) 156
AvaII GGWCC 2 cut(s) 716, 722
BanI GGYRCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 640
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 499
BccI CCATC 2 cut(s) 59, 707
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 2 cut(s) 720, 726
BciVI GTATCC 1 cut(s) 791
BcoDI GTCTC 4 cut(s) 110, 723, 847, 895
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 656
BfuI GTATCC 1 cut(s) 791
BisI GCNGC 3 cut(s) 73, 76, 513
BlsI GCNGC 3 cut(s) 74, 77, 514
Bme1390I CCNGG 2 cut(s) 720, 726
Bme18I GGWCC 2 cut(s) 716, 722
BmgT120I GGNCC 2 cut(s) 716, 722
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 720, 726
BmsI GCATC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BsaBI GATNNNNATC 1 cut(s) 802
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 5, 73
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 2 cut(s) 725, 749
Bse8I GATNNNNATC 1 cut(s) 802
BseBI CCWGG 2 cut(s) 720, 726
BseDI CCNNGG 2 cut(s) 5, 73
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 802
BseLI CCNNNNNNNGG 2 cut(s) 725, 749
BseMII CTCAG 3 cut(s) 14, 476, 911
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 3 cut(s) 75, 503, 677
BshNI GGYRCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 89, 125
BslFI GGGAC 2 cut(s) 119, 907
BslI CCNNNNNNNGG 2 cut(s) 725, 749
BsmAI GTCTC 4 cut(s) 110, 723, 847, 895
BsmBI CGTCTC 2 cut(s) 110, 847
BsmFI GGGAC 2 cut(s) 119, 907
Bsp1286I GDGCHC 2 cut(s) 186, 640
Bsp143I GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 3 cut(s) 73, 75, 677
BspCNI CTCAG 3 cut(s) 15, 477, 910
BspFNI CGCG 3 cut(s) 75, 503, 677
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 3 cut(s) 157, 458, 853
BspT107I GGYRCC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 5, 73
BssMI GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 720, 726
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 70
BstAFI CTTAAG 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 5 cut(s) 23, 392, 485, 863, 897
BstDSI CCRYGG 2 cut(s) 5, 73
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 3 cut(s) 75, 503, 677
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 4 cut(s) 124, 503, 677, 862
BstKTI GATC 9 cut(s) 152, 259, 337, 412, 430, 466, 806, 848, 927
BstMAI GTCTC 4 cut(s) 110, 723, 847, 895
BstMBI GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
BstMWI GCNNNNNNNGC 2 cut(s) 119, 509
BstNI CCWGG 2 cut(s) 720, 726
BstSCI CCNGG 2 cut(s) 718, 724
BstSFI CTRYAG 1 cut(s) 746
BstUI CGCG 3 cut(s) 75, 503, 677
BstV1I GCAGC 1 cut(s) 499
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 149
BsuI GTATCC 1 cut(s) 791
BtgI CCRYGG 2 cut(s) 5, 73
BtsCI GGATG 1 cut(s) 70
CaiI CAGNNNCTG 2 cut(s) 146, 484
CciI TCATGA 1 cut(s) 193
CfoI GCGC 4 cut(s) 124, 503, 677, 862
Cfr13I GGNCC 2 cut(s) 716, 722
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 272, 307
CviAII CATG 4 cut(s) 6, 97, 194, 917
DdeI CTNAG 5 cut(s) 23, 392, 485, 863, 897
DpnI GATC 9 cut(s) 151, 258, 336, 411, 429, 465, 805, 847, 926
DpnII GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
DraI TTTAAA 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 716, 722
Eco47III AGCGCT 1 cut(s) 861
Eco57I CTGAAG 2 cut(s) 123, 489
EcoRII CCWGG 2 cut(s) 718, 724
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 5
Esp3I CGTCTC 2 cut(s) 110, 847
FaeI CATG 4 cut(s) 9, 100, 197, 920
FaiI YATR 9 cut(s) 7, 98, 179, 195, 317, 509, 687, 873, 918
FaqI GGGAC 2 cut(s) 119, 907
FatI CATG 4 cut(s) 5, 96, 193, 916
Fnu4HI GCNGC 3 cut(s) 73, 76, 513
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 640
Fsp4HI GCNGC 3 cut(s) 73, 76, 513
GlaI GCGC 4 cut(s) 123, 502, 676, 861
GluI GCNGC 3 cut(s) 73, 76, 513
HaeII RGCGCY 1 cut(s) 863
HapII CCGG 2 cut(s) 89, 125
HgaI GACGC 1 cut(s) 78
HhaI GCGC 4 cut(s) 124, 503, 677, 862
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 4 cut(s) 9, 100, 197, 920
Hin6I GCGC 4 cut(s) 122, 501, 675, 860
HinP1I GCGC 4 cut(s) 122, 501, 675, 860
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HpaII CCGG 2 cut(s) 89, 125
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 310
Hpy188III TCNNGA 9 cut(s) 147, 194, 254, 329, 352, 425, 467, 596, 833
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 4 cut(s) 147, 206, 547, 872
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 14, 515, 667, 875, 916
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 509
HpyF3I CTNAG 5 cut(s) 23, 392, 485, 863, 897
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 4 cut(s) 9, 100, 197, 920
HspAI GCGC 4 cut(s) 122, 501, 675, 860
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
LmnI GCTCC 2 cut(s) 577, 616
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 389
MaeII ACGT 1 cut(s) 228
MalI GATC 9 cut(s) 151, 258, 336, 411, 429, 465, 805, 847, 926
MboI GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
MboII GAAGA 7 cut(s) 209, 482, 518, 709, 716, 765, 947
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 186, 640
MluCI AATT 4 cut(s) 599, 650, 670, 967
MlyI GAGTC 5 cut(s) 315, 430, 448, 532, 889
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 5 cut(s) 55, 270, 579, 607, 753
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 4 cut(s) 497, 602, 657, 998
MslI CAYNNNNRTG 2 cut(s) 285, 317
MspA1I CMGCKG 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 2 cut(s) 89, 125
MspR9I CCNGG 2 cut(s) 720, 726
MvaI CCWGG 2 cut(s) 720, 726
MvnI CGCG 3 cut(s) 75, 503, 677
MwoI GCNNNNNNNGC 2 cut(s) 119, 509
NcoI CCATGG 1 cut(s) 5
NdeII GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
NlaIII CATG 4 cut(s) 9, 100, 197, 920
NlaIV GGNNCC 1 cut(s) 281
PagI TCATGA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 6 cut(s) 143, 200, 216, 325, 348, 1009
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 3 cut(s) 74, 77, 514
PleI GAGTC 5 cut(s) 314, 429, 447, 531, 889
PpsI GAGTC 5 cut(s) 314, 429, 447, 531, 889
Psp6I CCWGG 2 cut(s) 718, 724
PspGI CCWGG 2 cut(s) 718, 724
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 2 cut(s) 716, 722
PstNI CAGNNNCTG 2 cut(s) 146, 484
PsuI RGATCY 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 285, 317
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 4 cut(s) 497, 602, 657, 998
SatI GCNGC 3 cut(s) 73, 76, 513
Sau3AI GATC 9 cut(s) 149, 256, 334, 409, 427, 463, 803, 845, 924
Sau96I GGNCC 2 cut(s) 716, 722
SchI GAGTC 5 cut(s) 315, 430, 448, 532, 889
ScrFI CCNGG 2 cut(s) 720, 726
SduI GDGCHC 2 cut(s) 186, 640
SetI ASST 9 cut(s) 231, 237, 361, 393, 582, 595, 621, 724, 780
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 746
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 2 cut(s) 716, 722
SmiMI CAYNNNNRTG 2 cut(s) 285, 317
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 4 cut(s) 599, 650, 670, 967
SsiI CCGC 3 cut(s) 73, 75, 677
SspI AATATT 1 cut(s) 949
StyD4I CCNGG 2 cut(s) 718, 724
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 275, 330, 584
TasI AATT 4 cut(s) 599, 650, 670, 967
TauI GCSGC 2 cut(s) 75, 78
TfiI GAWTC 6 cut(s) 143, 200, 216, 325, 348, 1009
Tru1I TTAA 4 cut(s) 497, 602, 657, 998
Tru9I TTAA 4 cut(s) 497, 602, 657, 998
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 210, 933, 954
TspGWI ACGGA 2 cut(s) 433, 810
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 716, 722
XapI RAATTY 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.