MD05G1060100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013297
Physical Location & Seq
Reverse (-)
10466769 .. 10468448
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1060100.v1.1.491

Sequence Viewer

Length: 924 bp
ATGAACCGGGTTCTAGCATTTCCATCTCCTGCAGTACTGTTGCCAGCTTCTTCCACAACCCCTAAAGACCGCCCAGAAGATCATAGTTTTGATGGCATTGCCCCCAATGTGAAGTTATTATTAAAGCTAATCCAAGAACATAACGAGGCCAGCACAAAAGACAATGATGACCGGAAGATGCAAAGGGTGGCGGGAATGATGACGATAATCGATGATGTTAAAACCCGGATTCAGAAATCTCAAACCGTTGGGCGGAGAGCAGAGCTCCGGCTATGCAATACAGATGTTAGGCCAAATGTTCTGAGGGACAAAAGGCCTCCGGAGCCAATAATTGATGAGAAAGAAAAGTTGAGAAGACAGCTTAGCGCGAGCTTGGCAGTGAGAAAGAGCCTAGAAATAATGTGTTCAGGCTTGGGAAAGGAGAAGGAGATTATTGCATTGGAGTGTGCGAGAAAGGTTCACGAATTGAGTGGGATGGAGGAACATATCAATGATCTTCGAGCACAAAACGAGATGCTGTTGGCAAAAGTAAAAGTTTGTGCAGCAGAGCACAAGGAGAAGAGGTGTGCAGATGGGGTAGAGATTCATGGGAATGCAGCACTCCAGGAGCGAAACAAGGAGCTTTCAGAGCTACTCCTTAAGTCCCTTGATGGTTGTAGATCCTTAAAAAGAAAGATCAAAGACGCACAAAAGGAAAACAATGGGATGCACTCTGCGATGGAGGAGATGAGGGTGGAAGTTCAAGAAGGCCTAGACCGAATACATGTCCTCAAGGAAAAGATTGCCACAAAGCAAGCAGCAGATATCGAAGAGGAGATTTCAGCATTGGAACATCTTTTTGAGTGCTTCAGTATGAAGATTTCGAAGCATGAACCGAAGAAAGGTGAAAGTGCAAAACACAACACTGAGATCAACACTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.71

Weight (kDa)

8.09

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03620 AT4G03620
fragaria_vesca FvH4_3g09520 FvH4_3g09520
malus_domestica MD05G1060100.v1.1 MD10G1256000.v1.1
prunus_persica Prupe.4G087600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0015101
rosa_laevigata RLG00000032170
rosa_multiflora Rmu_sc0002209.1_g000004
rosa_roxburghii Rroxscaffold_1G00061430
rosa_rugosa Rorug05G0024300 Rorug05G0024300
rosa_samantha Rh5AG118700 Rh5BG116600 Rh5CG127700 Rh5DG115600
rosa_wichuraiana Rw5G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 3 cut(s) 70, 191, 253
AclWI GGATC 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 832
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 252, 881
AflII CTTAAG 1 cut(s) 638
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 1 cut(s) 743
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 7 cut(s) 47, 127, 265, 361, 372, 622, 631
AluI AGCT 7 cut(s) 47, 127, 265, 361, 372, 622, 631
Alw21I GWGCWC 3 cut(s) 267, 505, 552
AlwI GGATC 1 cut(s) 654
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 4 cut(s) 147, 290, 314, 748
ApeKI GCWGC 3 cut(s) 542, 596, 797
AspLEI GCGC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 8, 226
AsuHPI GGTGA 1 cut(s) 896
AsuII TTCGAA 1 cut(s) 863
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 3 cut(s) 267, 505, 552
BbvI GCAGC 3 cut(s) 554, 608, 809
BccI CCATC 6 cut(s) 31, 86, 469, 566, 644, 712
BciT130I CCWGG 1 cut(s) 605
BcnI CCSGG 2 cut(s) 8, 226
BfaI CTAG 3 cut(s) 14, 392, 752
BfmI CTRYAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 638
BisI GCNGC 3 cut(s) 543, 597, 798
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 3 cut(s) 544, 598, 799
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 8, 226, 605
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 3 cut(s) 8, 226, 605
BmsI GCATC 3 cut(s) 168, 504, 696
BpiI GAAGAC 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpmI CTGGAG 1 cut(s) 587
Bpu1102I GCTNAGC 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 863
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 2 cut(s) 8, 226
Bsa29I ATCGAT 1 cut(s) 210
BsaWI WCCGGW 2 cut(s) 171, 319
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 881
Bse3DI GCAATG 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 605
BseCI ATCGAT 1 cut(s) 210
BseGI GGATG 2 cut(s) 480, 711
BseLI CCNNNNNNNGG 2 cut(s) 252, 881
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 293, 897
BseRI GAGGAG 2 cut(s) 737, 827
BseXI GCAGC 3 cut(s) 554, 608, 809
BsgI GTGCAG 2 cut(s) 561, 588
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 149, 292, 316, 750
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 3 cut(s) 267, 505, 552
BsiSI CCGG 5 cut(s) 7, 172, 226, 268, 320
BslFI GGGAC 2 cut(s) 320, 628
BslI CCNNNNNNNGG 2 cut(s) 252, 881
BsmFI GGGAC 2 cut(s) 320, 628
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 4 cut(s) 149, 292, 316, 750
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 3 cut(s) 267, 505, 552
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 5 cut(s) 79, 493, 659, 675, 909
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 3 cut(s) 70, 191, 253
BspANI GGCC 4 cut(s) 149, 292, 316, 750
BspCNI CTCAG 2 cut(s) 294, 898
BspDI ATCGAT 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 654
BspT104I TTCGAA 1 cut(s) 863
BspTI CTTAAG 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 96
BssMI GATC 5 cut(s) 79, 493, 659, 675, 909
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 2 cut(s) 39, 247
Bst6I CTCTTC 2 cut(s) 554, 804
BstAFI CTTAAG 1 cut(s) 638
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 4 cut(s) 45, 151, 370, 795
BstDEI CTNAG 3 cut(s) 302, 362, 906
BstF5I GGATG 2 cut(s) 480, 711
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 5 cut(s) 82, 496, 662, 678, 912
BstMBI GATC 5 cut(s) 79, 493, 659, 675, 909
BstMWI GCNNNNNNNGC 3 cut(s) 322, 374, 628
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 3 cut(s) 6, 224, 603
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 554, 608, 809
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 659
BstYI RGATCY 1 cut(s) 659
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 4 cut(s) 149, 292, 316, 750
BsuTUI ATCGAT 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 731
BtsCI GGATG 2 cut(s) 480, 711
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 384, 903
Cac8I GCNNGC 4 cut(s) 45, 151, 370, 795
CfoI GCGC 1 cut(s) 368
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 35
CviAII CATG 3 cut(s) 587, 764, 869
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 3 cut(s) 302, 362, 906
DpnI GATC 5 cut(s) 81, 495, 661, 677, 911
DpnII GATC 5 cut(s) 79, 493, 659, 675, 909
Eam1104I CTCTTC 2 cut(s) 554, 804
EarI CTCTTC 2 cut(s) 554, 804
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 265
Eco147I AGGCCT 2 cut(s) 316, 750
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 805
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 603
EcoRV GATATC 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 3 cut(s) 590, 767, 872
FaiI YATR 8 cut(s) 84, 141, 274, 486, 588, 765, 854, 870
FaqI GGGAC 2 cut(s) 320, 628
FatI CATG 3 cut(s) 586, 763, 868
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 543, 597, 798
FokI GGATG 2 cut(s) 487, 718
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 543, 597, 798
FspBI CTAG 3 cut(s) 14, 392, 752
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 543, 597, 798
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 4 cut(s) 149, 292, 316, 750
HapII CCGG 5 cut(s) 7, 172, 226, 268, 320
HgaI GACGC 1 cut(s) 692
HhaI GCGC 1 cut(s) 368
Hin1II CATG 3 cut(s) 590, 767, 872
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 2 cut(s) 229, 583
HpaII CCGG 5 cut(s) 7, 172, 226, 268, 320
HphI GGTGA 1 cut(s) 896
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 3 cut(s) 234, 303, 628
Hpy188III TCNNGA 3 cut(s) 320, 461, 743
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 2 cut(s) 418, 740
HpyCH4III ACNGT 2 cut(s) 39, 247
HpyCH4V TGCA 9 cut(s) 32, 181, 276, 437, 542, 569, 596, 709, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 374, 628
HpyF3I CTNAG 3 cut(s) 302, 362, 906
Hsp92II CATG 3 cut(s) 590, 767, 872
HspAI GCGC 1 cut(s) 366
Kpn2I TCCGGA 1 cut(s) 319
Kzo9I GATC 5 cut(s) 79, 493, 659, 675, 909
LmnI GCTCC 4 cut(s) 270, 322, 607, 619
Lsp1109I GCAGC 3 cut(s) 554, 608, 809
LweI GCATC 3 cut(s) 168, 504, 696
MaeI CTAG 3 cut(s) 14, 392, 752
MalI GATC 5 cut(s) 81, 495, 661, 677, 911
MboI GATC 5 cut(s) 79, 493, 659, 675, 909
MboII GAAGA 9 cut(s) 42, 89, 187, 366, 488, 571, 821, 868, 889
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 3 cut(s) 267, 505, 552
MluCI AATT 2 cut(s) 330, 464
MnlI CCTC 9 cut(s) 139, 297, 327, 472, 555, 715, 723, 779, 805
MroI TCCGGA 1 cut(s) 319
MseI TTAA 5 cut(s) 122, 219, 639, 665, 922
MslI CAYNNNNRTG 3 cut(s) 442, 489, 591
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 5 cut(s) 7, 172, 226, 268, 320
MspR9I CCNGG 3 cut(s) 8, 226, 605
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 1 cut(s) 605
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 322, 374, 628
NciI CCSGG 2 cut(s) 8, 226
NdeII GATC 5 cut(s) 79, 493, 659, 675, 909
NlaIII CATG 3 cut(s) 590, 767, 872
NlaIV GGNNCC 1 cut(s) 324
NspI RCATGY 1 cut(s) 767
NspV TTCGAA 1 cut(s) 863
PceI AGGCCT 2 cut(s) 316, 750
PciI ACATGT 1 cut(s) 763
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 229, 583
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 3 cut(s) 544, 598, 799
PscI ACATGT 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 659
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 3 cut(s) 442, 489, 591
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 5 cut(s) 122, 219, 639, 665, 922
SatI GCNGC 3 cut(s) 543, 597, 798
Sau3AI GATC 5 cut(s) 79, 493, 659, 675, 909
ScaI AGTACT 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 8, 226, 605
SduI GDGCHC 3 cut(s) 267, 505, 552
SfaNI GCATC 3 cut(s) 168, 504, 696
SfcI CTRYAG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 863
SmiMI CAYNNNNRTG 3 cut(s) 442, 489, 591
SmlI CTYRAG 2 cut(s) 638, 770
SmoI CTYRAG 2 cut(s) 638, 770
Sse9I AATT 2 cut(s) 330, 464
SseBI AGGCCT 2 cut(s) 316, 750
SsiI CCGC 3 cut(s) 70, 191, 253
SspMI CTAG 3 cut(s) 14, 392, 752
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 2 cut(s) 316, 750
StyD4I CCNGG 3 cut(s) 6, 224, 603
TaaI ACNGT 2 cut(s) 39, 247
TaqI TCGA 4 cut(s) 210, 499, 807, 863
TaqII GACCGA 1 cut(s) 771
TasI AATT 2 cut(s) 330, 464
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 2 cut(s) 229, 583
Tru1I TTAA 5 cut(s) 122, 219, 639, 665, 922
Tru9I TTAA 5 cut(s) 122, 219, 639, 665, 922
TscAI CASTG 2 cut(s) 384, 910
TseI GCWGC 3 cut(s) 542, 596, 797
TspDTI ATGAA 4 cut(s) 17, 575, 869, 885
TspRI CASTG 2 cut(s) 384, 910
Vha464I CTTAAG 1 cut(s) 638
XceI RCATGY 1 cut(s) 767
XspI CTAG 3 cut(s) 14, 392, 752
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.