FvH4_3g09520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013297
Physical Location & Seq
Reverse (-)
5542039 .. 5546493
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09520.t1

Sequence Viewer

Length: 924 bp
ATGATGAGCCGAATCCGAGCATTTTCATCTCCTTCAGTATTGCCACCATCTTCTTCCACAAGTCATATAGAAGTCCCGCCAGAAGATCATAGTTTAGAAGGCATTGCTGCCAATGTTAAGTTACTATTGAAGCTGATCCAAGACCAGAATGAGGCAAAAGACAATGATGCAAGAAAGACACAAAGAGTGGCTGGAATGATATCAATAATTGATGATGTGAAATCCCGGATACAAAAATCTCAAAAAGTGGGGAGAAAAGCCGAGCTGAGGCGCTGCAATACAGATCTGAGGCCAAATGCTCCTCCAAAGGACAAAAGGTCTCATGAACCAGTAACCGATGAGAAGGAGAAATTGAGAAGATCACTAAGTGCAAGCTTGGCTGCAAGAAAGAGCCTAGAAATTATGTGTACTAGTTTGGGAAAGGAGAAGGAGATTATTGCAAAAGAGCTTGCAAGGAAGGTTCAAGAATTTCAAGGGATGGAGGAACACATCAATGATCTTAGAGCGCAAAATGAGAAGTTGTTGGCAAAAGTAAAAGCTTGTGCATCAGAGCACAAAGAGAATAAGTGTGGAGGTGGGGAAGTGAATGCTACCCATGGGAATGCAGCGCTCCAGGAGCGAAACAAGGAACTTTCGGAGCAACTCCTTAAGTCCCTTGATGGGTGTAGATCCCTAAAGAGGAAGATTAAAGTTGCACAAAAGGAAAATGATGCAATGCACCTGGCCATGGGGGAGATTGGAATGGATGTTCAAGATGGACTGGACCGAATACACTGCCTCAAGGAAGGGATTGCAGCAGGAAATGCAGATATTGAAGAGGAATTTTCAGCATTGGAGCATCTGTTTGAGTCCTGCTACATGAAGATCTCGGAACATGAGCAGAAGAAATTTGAGAAAAACAAGGCCGAGGTGAATGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.29

Weight (kDa)

8.36

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03620 AT4G03620
fragaria_vesca FvH4_3g09520 FvH4_3g09520
malus_domestica MD05G1060100.v1.1 MD10G1256000.v1.1
prunus_persica Prupe.4G087600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0015101
rosa_laevigata RLG00000032170
rosa_multiflora Rmu_sc0002209.1_g000004
rosa_roxburghii Rroxscaffold_1G00061430
rosa_rugosa Rorug05G0024300 Rorug05G0024300
rosa_samantha Rh5AG118700 Rh5BG116600 Rh5CG127700 Rh5DG115600
rosa_wichuraiana Rw5G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 2 cut(s) 130, 663
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 3 cut(s) 467, 821, 887
AcuI CTGAAG 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 409
AfeI AGCGCT 1 cut(s) 609
AfiI CCNNNNNNNGG 5 cut(s) 151, 267, 660, 678, 727
AflII CTTAAG 1 cut(s) 647
AgsI TTSAA 5 cut(s) 130, 464, 473, 752, 815
AhdI GACNNNNNGTC 1 cut(s) 316
AhlI ACTAGT 1 cut(s) 410
AjnI CCWGG 2 cut(s) 612, 720
AloI GAACNNNNNNTCC 2 cut(s) 732, 764
AluBI AGCT 5 cut(s) 133, 265, 375, 448, 539
AluI AGCT 5 cut(s) 133, 265, 375, 448, 539
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 130, 663
Aor51HI AGCGCT 1 cut(s) 609
AoxI GGCC 3 cut(s) 290, 723, 903
ApeKI GCWGC 5 cut(s) 107, 273, 380, 605, 794
ApoI RAATTY 3 cut(s) 467, 821, 887
AspLEI GCGC 3 cut(s) 273, 508, 610
AspS9I GGNCC 1 cut(s) 763
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 922
AvaII GGWCC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 5 cut(s) 94, 260, 367, 617, 806
BccI CCATC 4 cut(s) 55, 472, 653, 749
BcgI CGANNNNNNTGC 3 cut(s) 756, 790, 896
BciT130I CCWGG 2 cut(s) 614, 722
BciVI GTATCC 1 cut(s) 222
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 2 cut(s) 395, 411
BfoI RGCGCY 2 cut(s) 274, 611
BfrI CTTAAG 1 cut(s) 647
BfuI GTATCC 1 cut(s) 222
BglII AGATCT 2 cut(s) 283, 864
BisI GCNGC 5 cut(s) 108, 274, 381, 606, 795
BlsI GCNGC 5 cut(s) 109, 275, 382, 607, 796
Bme1390I CCNGG 3 cut(s) 226, 614, 722
Bme18I GGWCC 1 cut(s) 763
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 763
BmrFI CCNGG 3 cut(s) 226, 614, 722
BmsI GCATC 4 cut(s) 157, 554, 700, 847
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 595, 726, 906
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 267, 660, 678, 727
Bse1I ACTGG 2 cut(s) 329, 765
Bse3DI GCAATG 2 cut(s) 102, 720
BseBI CCWGG 2 cut(s) 614, 722
BseDI CCNNGG 3 cut(s) 595, 726, 906
BseGI GGATG 2 cut(s) 483, 751
BseLI CCNNNNNNNGG 5 cut(s) 151, 267, 660, 678, 727
BseMI GCAATG 2 cut(s) 102, 720
BseMII CTCAG 2 cut(s) 257, 278
BseNI ACTGG 2 cut(s) 329, 765
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 5 cut(s) 94, 260, 367, 617, 806
BshFI GGCC 3 cut(s) 292, 725, 905
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 2 cut(s) 59, 637
BslI CCNNNNNNNGG 5 cut(s) 151, 267, 660, 678, 727
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 59, 637
BsmI GAATGC 3 cut(s) 592, 607, 919
BsnI GGCC 3 cut(s) 292, 725, 905
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
Bsp19I CCATGG 2 cut(s) 595, 726
BspACI CCGC 1 cut(s) 77
BspANI GGCC 3 cut(s) 292, 725, 905
BspCNI CTCAG 2 cut(s) 258, 279
BspHI TCATGA 1 cut(s) 322
BspPI GGATC 2 cut(s) 130, 663
BspTI CTTAAG 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 102, 720
BsrI ACTGG 2 cut(s) 329, 765
BssECI CCNNGG 3 cut(s) 595, 726, 906
BssMI GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
BssT1I CCWWGG 2 cut(s) 595, 726
Bst2UI CCWGG 2 cut(s) 614, 722
Bst6I CTCTTC 1 cut(s) 810
BstAFI CTTAAG 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 373, 450
BstDEI CTNAG 4 cut(s) 266, 287, 365, 500
BstDSI CCRYGG 2 cut(s) 595, 726
BstF5I GGATG 2 cut(s) 483, 751
BstH2I RGCGCY 2 cut(s) 274, 611
BstHHI GCGC 3 cut(s) 273, 508, 610
BstKTI GATC 7 cut(s) 88, 138, 286, 362, 499, 671, 867
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
BstMWI GCNNNNNNNGC 3 cut(s) 377, 616, 803
BstNI CCWGG 2 cut(s) 614, 722
BstSCI CCNGG 3 cut(s) 224, 612, 720
BstV1I GCAGC 5 cut(s) 94, 260, 367, 617, 806
BstX2I RGATCY 3 cut(s) 283, 668, 864
BstYI RGATCY 3 cut(s) 283, 668, 864
BsuI GTATCC 1 cut(s) 222
BsuRI GGCC 3 cut(s) 292, 725, 905
BtgI CCRYGG 2 cut(s) 595, 726
BtsCI GGATG 2 cut(s) 483, 751
BtsI GCAGTG 1 cut(s) 772
BtsIMutI CAGTG 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 373, 450
CciI TCATGA 1 cut(s) 322
CfoI GCGC 3 cut(s) 273, 508, 610
Cfr13I GGNCC 1 cut(s) 763
Csp6I GTAC 1 cut(s) 408
CviAII CATG 5 cut(s) 323, 596, 727, 859, 875
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 4 cut(s) 266, 287, 365, 500
DpnI GATC 7 cut(s) 87, 137, 285, 361, 498, 670, 866
DpnII GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
DraIII CACNNNGTG 1 cut(s) 368
DriI GACNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 1 cut(s) 810
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 2 cut(s) 595, 726
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 763
Eco47III AGCGCT 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 612, 720
EcoRV GATATC 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 595, 726
ErhI CCWWGG 2 cut(s) 595, 726
FaeI CATG 5 cut(s) 326, 599, 730, 862, 878
FaiI YATR 9 cut(s) 66, 68, 90, 324, 404, 597, 728, 860, 876
FaqI GGGAC 2 cut(s) 59, 637
FatI CATG 5 cut(s) 322, 595, 726, 858, 874
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 5 cut(s) 108, 274, 381, 606, 795
FokI GGATG 2 cut(s) 490, 758
Fsp4HI GCNGC 5 cut(s) 108, 274, 381, 606, 795
FspBI CTAG 2 cut(s) 395, 411
GlaI GCGC 3 cut(s) 272, 507, 609
GluI GCNGC 5 cut(s) 108, 274, 381, 606, 795
GsuI CTGGAG 1 cut(s) 596
HaeII RGCGCY 2 cut(s) 274, 611
HaeIII GGCC 3 cut(s) 292, 725, 905
HapII CCGG 1 cut(s) 226
HhaI GCGC 3 cut(s) 273, 508, 610
Hin1II CATG 5 cut(s) 326, 599, 730, 862, 878
Hin6I GCGC 3 cut(s) 271, 506, 608
HinP1I GCGC 3 cut(s) 271, 506, 608
HindIII AAGCTT 2 cut(s) 373, 537
HinfI GANTC 2 cut(s) 12, 848
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 5 cut(s) 17, 288, 550, 637, 871
Hpy188III TCNNGA 3 cut(s) 323, 464, 752
Hpy8I GTNNAC 1 cut(s) 408
HpyAV CCTTC 6 cut(s) 42, 92, 337, 421, 451, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 616, 803
HpyF3I CTNAG 4 cut(s) 266, 287, 365, 500
Hsp92II CATG 5 cut(s) 326, 599, 730, 862, 878
HspAI GCGC 3 cut(s) 271, 506, 608
Kzo9I GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
LmnI GCTCC 5 cut(s) 304, 615, 616, 637, 835
Lsp1109I GCAGC 5 cut(s) 94, 260, 367, 617, 806
LweI GCATC 4 cut(s) 157, 554, 700, 847
MaeI CTAG 2 cut(s) 395, 411
MaeIII GTNAC 2 cut(s) 120, 331
MalI GATC 7 cut(s) 87, 137, 285, 361, 498, 670, 866
MboI GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
MboII GAAGA 8 cut(s) 42, 45, 95, 369, 694, 827, 874, 895
MflI RGATCY 3 cut(s) 283, 668, 864
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 6 cut(s) 207, 350, 399, 467, 821, 887
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 1 cut(s) 857
Mox20I TGGCCA 1 cut(s) 725
MscI TGGCCA 1 cut(s) 725
MseI TTAA 4 cut(s) 117, 648, 687, 922
MslI CAYNNNNRTG 2 cut(s) 492, 600
Msp20I TGGCCA 1 cut(s) 725
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 3 cut(s) 226, 614, 722
Mva1269I GAATGC 3 cut(s) 592, 607, 919
MvaI CCWGG 2 cut(s) 614, 722
MwoI GCNNNNNNNGC 3 cut(s) 377, 616, 803
NciI CCSGG 1 cut(s) 226
NcoI CCATGG 2 cut(s) 595, 726
NdeII GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
NlaIII CATG 5 cut(s) 326, 599, 730, 862, 878
NmeAIII GCCGAG 1 cut(s) 286
PagI TCATGA 1 cut(s) 322
PctI GAATGC 3 cut(s) 592, 607, 919
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 2 cut(s) 224, 612
PkrI GCNGC 5 cut(s) 109, 275, 382, 607, 796
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
Psp6I CCWGG 2 cut(s) 612, 720
PspGI CCWGG 2 cut(s) 612, 720
PspPI GGNCC 1 cut(s) 763
PsuI RGATCY 3 cut(s) 283, 668, 864
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 2 cut(s) 492, 600
SaqAI TTAA 4 cut(s) 117, 648, 687, 922
SatI GCNGC 5 cut(s) 108, 274, 381, 606, 795
Sau3AI GATC 7 cut(s) 85, 135, 283, 359, 496, 668, 864
Sau96I GGNCC 1 cut(s) 763
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 3 cut(s) 226, 614, 722
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 4 cut(s) 157, 554, 700, 847
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 2 cut(s) 492, 600
SmlI CTYRAG 2 cut(s) 647, 779
SmoI CTYRAG 2 cut(s) 647, 779
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 6 cut(s) 207, 350, 399, 467, 821, 887
SsiI CCGC 1 cut(s) 77
SspMI CTAG 2 cut(s) 395, 411
StyD4I CCNGG 3 cut(s) 224, 612, 720
StyI CCWWGG 2 cut(s) 595, 726
TaqII GACCGA 1 cut(s) 780
TasI AATT 6 cut(s) 207, 350, 399, 467, 821, 887
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 4 cut(s) 117, 648, 687, 922
Tru9I TTAA 4 cut(s) 117, 648, 687, 922
TscAI CASTG 1 cut(s) 779
TseI GCWGC 5 cut(s) 107, 273, 380, 605, 794
TspDTI ATGAA 3 cut(s) 15, 339, 875
TspRI CASTG 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 3 cut(s) 467, 821, 887
XspI CTAG 2 cut(s) 395, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.