RLG00000032170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013297
Physical Location & Seq
Reverse (-)
11778306 .. 11779416
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032170

Sequence Viewer

Length: 912 bp
ATGAGTCGAATTCGAGCATTTTCGTCTCCTTCAGTATTACCACCATCTTCTTCCACAAGTCAGATAGAAGTCCGGCCAGAAGATCATAGTTTTGAAGGCATTGCTACCAATGTTAAGTTACTATTGAAGCTAATCCAAGATCAGAATGAGGCAAAAGACAATGATGCCAGGAAGACACAAAGAGTGGCTGGAATGATATCAATAATTGATGATGTGAAATCCCGGATTCAAAGATCTCAAAGTGGGGGGAGAAAAGCCGAGCTGAGGCGCTGTAATACAGATCTTAAGCCACATGCTCCTCCAAAGGACAAAAGGCCTCACGAGCCAATAACTGATGAGAAGGAGAAATTGAGAAGATCACTAAGTGCAAGCTTGGCAGCAAGAAAGAGCCTAGAAATTATGTGTTCAAGTTTGGGAAAGGAGAAGGAGATTATCGCAACTGAGCTTGCAAGGAAGGTTCAAGAATTTCATGGGATGGAGGAACATATCAATGATCTTAGAGTGCAAAATGAGAAGTTGTTGGCAAAAGTAAAAGCTTGTGCAGCAGAGCACAAAGAGAATAAGTGTGGCGGTGAGGAAGAGAGTGATACCTATGGGAATGCAGCGCTCCAGGAGCGGAACAAGGAACTTTCGGAGCAACTCCTTAAGTCCCTTGATGGGTGTAGATCCCTAAAGAGGAAGATTAAAGCTGCACATAAGGAAAATGAGGCAATGCACCTGGCGATGGAGGAGATTGGAATGGATGTTCAAGATGGACTTGACCGAATACACTGCCTCAAGGAAGGGATTGTGGCGGGGAATGCAGATATTGAAGAGGAGCTTTTGGCATTGGAGCATCTGTTTGAGTCTTGCTACATGAAGGTCTCGGAACATGAGCAGAAGAAAAACAAGGCCGAGGTGAATGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

34.04

Weight (kDa)

6.62

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03620 AT4G03620
fragaria_vesca FvH4_3g09520 FvH4_3g09520
malus_domestica MD05G1060100.v1.1 MD10G1256000.v1.1
prunus_persica Prupe.4G087600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0015101
rosa_laevigata RLG00000032170
rosa_multiflora Rmu_sc0002209.1_g000004
rosa_roxburghii Rroxscaffold_1G00061430
rosa_rugosa Rorug05G0024300 Rorug05G0024300
rosa_samantha Rh5AG118700 Rh5BG116600 Rh5CG127700 Rh5DG115600
rosa_wichuraiana Rw5G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 616
AciI CCGC 3 cut(s) 570, 616, 794
AclWI GGATC 1 cut(s) 660
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 2 cut(s) 9, 464
AcuI CTGAAG 1 cut(s) 15
AdeI CACNNNGTG 1 cut(s) 365
AfeI AGCGCT 1 cut(s) 606
AfiI CCNNNNNNNGG 4 cut(s) 264, 657, 675, 724
AflII CTTAAG 2 cut(s) 284, 644
AgsI TTSAA 7 cut(s) 95, 127, 230, 408, 461, 749, 812
AjnI CCWGG 3 cut(s) 167, 609, 717
AloI GAACNNNNNNTCC 2 cut(s) 729, 761
AluBI AGCT 7 cut(s) 130, 262, 372, 445, 536, 689, 820
AluI AGCT 7 cut(s) 130, 262, 372, 445, 536, 689, 820
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 2 cut(s) 30, 868
AlwI GGATC 1 cut(s) 660
Aor51HI AGCGCT 1 cut(s) 606
AoxI GGCC 3 cut(s) 74, 314, 891
ApeKI GCWGC 4 cut(s) 377, 542, 602, 689
ApoI RAATTY 2 cut(s) 9, 464
AspLEI GCGC 2 cut(s) 270, 607
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 584, 910
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 4 cut(s) 389, 554, 614, 676
BccI CCATC 5 cut(s) 52, 469, 650, 718, 746
BcgI CGANNNNNNTGC 3 cut(s) 753, 787, 884
BciT130I CCWGG 3 cut(s) 169, 611, 719
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 30, 868
BfaI CTAG 1 cut(s) 392
BfoI RGCGCY 2 cut(s) 271, 608
BfrI CTTAAG 2 cut(s) 284, 644
BglII AGATCT 2 cut(s) 233, 280
BisI GCNGC 4 cut(s) 378, 543, 603, 690
BlsI GCNGC 4 cut(s) 379, 544, 604, 691
Bme1390I CCNGG 4 cut(s) 169, 223, 611, 719
BmrFI CCNGG 4 cut(s) 169, 223, 611, 719
BmsI GCATC 2 cut(s) 154, 844
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 761
BpuMI CCSGG 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 1 cut(s) 894
BsaXI ACNNNNNCTCC 2 cut(s) 824, 854
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 657, 675, 724
Bse3DI GCAATG 2 cut(s) 99, 717
BseBI CCWGG 3 cut(s) 169, 611, 719
BseDI CCNNGG 1 cut(s) 894
BseGI GGATG 2 cut(s) 480, 748
BseLI CCNNNNNNNGG 4 cut(s) 264, 657, 675, 724
BseMI GCAATG 2 cut(s) 99, 717
BseMII CTCAG 2 cut(s) 254, 432
BseRI GAGGAG 3 cut(s) 288, 743, 830
BseXI GCAGC 4 cut(s) 389, 554, 614, 676
BsgI GTGCAG 2 cut(s) 561, 675
BshFI GGCC 3 cut(s) 76, 316, 893
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 2 cut(s) 73, 223
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 4 cut(s) 264, 657, 675, 724
BsmAI GTCTC 2 cut(s) 30, 868
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 3 cut(s) 604, 805, 907
BsnI GGCC 3 cut(s) 76, 316, 893
Bso31I GGTCTC 1 cut(s) 868
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
BspACI CCGC 3 cut(s) 570, 616, 794
BspANI GGCC 3 cut(s) 76, 316, 893
BspCNI CTCAG 2 cut(s) 255, 433
BspPI GGATC 1 cut(s) 660
BspTI CTTAAG 2 cut(s) 284, 644
BspTNI GGTCTC 1 cut(s) 868
BsrBI CCGCTC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 99, 717
BssECI CCNNGG 1 cut(s) 894
BssMI GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 3 cut(s) 169, 611, 719
Bst6I CTCTTC 2 cut(s) 573, 807
BstAFI CTTAAG 2 cut(s) 284, 644
BstC8I GCNNGC 2 cut(s) 370, 447
BstDEI CTNAG 4 cut(s) 263, 362, 441, 497
BstF5I GGATG 2 cut(s) 480, 748
BstH2I RGCGCY 2 cut(s) 271, 608
BstHHI GCGC 2 cut(s) 270, 607
BstKTI GATC 7 cut(s) 85, 142, 236, 283, 359, 496, 668
BstMAI GTCTC 2 cut(s) 30, 868
BstMBI GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
BstMWI GCNNNNNNNGC 5 cut(s) 322, 374, 542, 613, 800
BstNI CCWGG 3 cut(s) 169, 611, 719
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 167, 221, 609, 717
BstV1I GCAGC 4 cut(s) 389, 554, 614, 676
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 3 cut(s) 233, 280, 665
BstYI RGATCY 3 cut(s) 233, 280, 665
BsuRI GGCC 3 cut(s) 76, 316, 893
BtgZI GCGATG 1 cut(s) 737
BtsCI GGATG 2 cut(s) 480, 748
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 1 cut(s) 769
Cac8I GCNNGC 2 cut(s) 370, 447
CfoI GCGC 2 cut(s) 270, 607
CviAII CATG 4 cut(s) 293, 470, 856, 872
DdeI CTNAG 4 cut(s) 263, 362, 441, 497
DpnI GATC 7 cut(s) 84, 141, 235, 282, 358, 495, 667
DpnII GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
DraIII CACNNNGTG 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 573, 807
EarI CTCTTC 2 cut(s) 573, 807
Eco147I AGGCCT 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 868
Eco32I GATATC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 3 cut(s) 167, 609, 717
EcoRV GATATC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 4 cut(s) 296, 473, 859, 875
FaiI YATR 9 cut(s) 87, 294, 401, 471, 486, 594, 696, 857, 873
FalI AAGNNNNNCTT 4 cut(s) 741, 773, 804, 836
FaqI GGGAC 1 cut(s) 634
FatI CATG 4 cut(s) 292, 469, 855, 871
FauI CCCGC 1 cut(s) 787
Fnu4HI GCNGC 4 cut(s) 378, 543, 603, 690
FokI GGATG 2 cut(s) 487, 755
Fsp4HI GCNGC 4 cut(s) 378, 543, 603, 690
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 269, 606
GluI GCNGC 4 cut(s) 378, 543, 603, 690
GsuI CTGGAG 1 cut(s) 593
HaeII RGCGCY 2 cut(s) 271, 608
HaeIII GGCC 3 cut(s) 76, 316, 893
HapII CCGG 2 cut(s) 73, 223
HhaI GCGC 2 cut(s) 270, 607
Hin1II CATG 4 cut(s) 296, 473, 859, 875
Hin6I GCGC 2 cut(s) 268, 605
HinP1I GCGC 2 cut(s) 268, 605
HindIII AAGCTT 2 cut(s) 370, 534
HinfI GANTC 3 cut(s) 4, 226, 845
HpaII CCGG 2 cut(s) 73, 223
HphI GGTGA 2 cut(s) 584, 910
Hpy188I TCNGA 4 cut(s) 63, 144, 634, 868
Hpy188III TCNNGA 3 cut(s) 320, 461, 749
HpyAV CCTTC 7 cut(s) 39, 89, 334, 418, 448, 776, 853
HpyCH4V TGCA 8 cut(s) 368, 449, 505, 542, 602, 692, 715, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 374, 542, 613, 800
HpyF3I CTNAG 4 cut(s) 263, 362, 441, 497
Hsp92II CATG 4 cut(s) 296, 473, 859, 875
HspAI GCGC 2 cut(s) 268, 605
Kzo9I GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
LmnI GCTCC 6 cut(s) 301, 612, 613, 634, 817, 832
Lsp1109I GCAGC 4 cut(s) 389, 554, 614, 676
LweI GCATC 2 cut(s) 154, 844
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 117
MalI GATC 7 cut(s) 84, 141, 235, 282, 358, 495, 667
MbiI CCGCTC 1 cut(s) 616
MboI GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
MboII GAAGA 9 cut(s) 39, 42, 92, 184, 366, 590, 691, 824, 892
MflI RGATCY 3 cut(s) 233, 280, 665
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 5 cut(s) 9, 204, 347, 396, 464
MlyI GAGTC 2 cut(s) 13, 854
MseI TTAA 5 cut(s) 114, 285, 645, 684, 910
MslI CAYNNNNRTG 1 cut(s) 489
MspCI CTTAAG 2 cut(s) 284, 644
MspI CCGG 2 cut(s) 73, 223
MspR9I CCNGG 4 cut(s) 169, 223, 611, 719
Mva1269I GAATGC 3 cut(s) 604, 805, 907
MvaI CCWGG 3 cut(s) 169, 611, 719
MwoI GCNNNNNNNGC 5 cut(s) 322, 374, 542, 613, 800
NciI CCSGG 1 cut(s) 223
NdeII GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
NlaIII CATG 4 cut(s) 296, 473, 859, 875
NmeAIII GCCGAG 1 cut(s) 283
NspI RCATGY 1 cut(s) 296
PceI AGGCCT 1 cut(s) 316
PctI GAATGC 3 cut(s) 604, 805, 907
PfeI GAWTC 1 cut(s) 226
PfoI TCCNGGA 2 cut(s) 221, 609
PkrI GCNGC 4 cut(s) 379, 544, 604, 691
PleI GAGTC 2 cut(s) 12, 853
PpsI GAGTC 2 cut(s) 12, 853
Psp6I CCWGG 3 cut(s) 167, 609, 717
PspGI CCWGG 3 cut(s) 167, 609, 717
PsuI RGATCY 3 cut(s) 233, 280, 665
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 5 cut(s) 114, 285, 645, 684, 910
SatI GCNGC 4 cut(s) 378, 543, 603, 690
Sau3AI GATC 7 cut(s) 82, 139, 233, 280, 356, 493, 665
SchI GAGTC 2 cut(s) 13, 854
ScrFI CCNGG 4 cut(s) 169, 223, 611, 719
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 154, 844
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 3 cut(s) 284, 644, 776
SmoI CTYRAG 3 cut(s) 284, 644, 776
Sse9I AATT 5 cut(s) 9, 204, 347, 396, 464
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 3 cut(s) 570, 616, 794
SspMI CTAG 1 cut(s) 392
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 4 cut(s) 167, 221, 609, 717
TaqI TCGA 2 cut(s) 7, 13
TaqII GACCGA 1 cut(s) 777
TasI AATT 5 cut(s) 9, 204, 347, 396, 464
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 5 cut(s) 114, 285, 645, 684, 910
Tru9I TTAA 5 cut(s) 114, 285, 645, 684, 910
TscAI CASTG 1 cut(s) 776
TseI GCWGC 4 cut(s) 377, 542, 602, 689
TspDTI ATGAA 2 cut(s) 458, 872
TspRI CASTG 1 cut(s) 776
Vha464I CTTAAG 2 cut(s) 284, 644
XapI RAATTY 2 cut(s) 9, 464
XceI RCATGY 1 cut(s) 296
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.