Prupe.4G087600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013297
Physical Location & Seq
Reverse (-)
4300043 .. 4301992
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G087600.1

Sequence Viewer

Length: 933 bp
ATGAACCGAATTCGAGCTTTTTCATCTCCTGCAGTGTTGCCATTGCCAGCTTCTTCCACAACTCCGAAAGAGCGCCCAGAAGATCATAGTTTTGATGGCATTGCCACCAATGTCAAGTTATTATTGAAGCTAATCCATGATCACAACGAGGCCTGCACAAAAGAGAATGATGACAGGAAGACGCAAAGGGTGGCTGGAATGATTACCATAATCGACGATGTTAAAACCAGGATTCAAAAATCTCAATCTATTGGCAGGAGGGCAGAGCTGAGGCGTTGCAACACAGATCTTAGGCCAAATGTTCCGAGGGACAAAAGGCCTACGGAGCCAATAATCGATGAGAAAGAGAGGTTGAGAAAGCAGCTTAGCGCGAGCTTGGCAGCGCGAAAGAGCCTAGAAATTATGTGTTCCAGTTTGGGAAAGGAGAAGGAGATTATTGCATCAGAGCTTGCAAGAAAGGTTCAAGAATTTAGTGGAATGGAGGAACACATCAATGATCTTAGAGCGCAAAATGAGAAGTTGTTGGCAAAAGTACAAGCTTGTGCAGCAGAGCACAAAGAGAAGAAGTGTGGTGGGGTAGAGATTCAAGGGAATGTGGCGCTCCAGGAGCGAAACAAGGCGCTTTCGGAGCAACTCCTTAAGTCCCTTGACGGGTGCAGATCCTTAAAGAGAAAGATTAAAGATGCACAGAAGGAAAACAATGGGATGCACTCGGCAATGGAGGAGATGGGGGTCGAAGTTCAAGAAGGCCTTGATCGAATACGAGCCCTCAGGGAAAAGATTACCACAAGTGATAATGAGCAAGCAACAGATGTTGAAGAGGAGATATCAGCATTGGAGCGTCTGTTTGAGTGCTTCAGCACGAGGGTCTCCAAGCACGACCCGAAGAAAGGCGAATTTGCAAAACACAACACTGAAATTGAAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.01

Weight (kDa)

8.38

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03620 AT4G03620
fragaria_vesca FvH4_3g09520 FvH4_3g09520
malus_domestica MD05G1060100.v1.1 MD10G1256000.v1.1
prunus_persica Prupe.4G087600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0015101
rosa_laevigata RLG00000032170
rosa_multiflora Rmu_sc0002209.1_g000004
rosa_roxburghii Rroxscaffold_1G00061430
rosa_rugosa Rorug05G0024300 Rorug05G0024300
rosa_samantha Rh5AG118700 Rh5BG116600 Rh5CG127700 Rh5DG115600
rosa_wichuraiana Rw5G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 371, 385
AclWI GGATC 1 cut(s) 654
AcsI RAATTY 3 cut(s) 9, 467, 896
AcuI CTGAAG 1 cut(s) 841
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 2 cut(s) 651, 890
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 7 cut(s) 127, 236, 464, 587, 743, 818, 923
AjnI CCWGG 2 cut(s) 227, 603
AluBI AGCT 9 cut(s) 17, 50, 130, 268, 364, 375, 448, 539, 926
AluI AGCT 9 cut(s) 17, 50, 130, 268, 364, 375, 448, 539, 926
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 874
AlwI GGATC 1 cut(s) 654
AoxI GGCC 4 cut(s) 150, 293, 317, 748
ApeKI GCWGC 3 cut(s) 361, 380, 545
ApoI RAATTY 3 cut(s) 9, 467, 896
AspLEI GCGC 6 cut(s) 75, 371, 385, 508, 601, 622
AxyI CCTNAGG 1 cut(s) 770
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 373, 392, 557
BccI CCATC 2 cut(s) 89, 721
BciT130I CCWGG 2 cut(s) 229, 605
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 874
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 3 cut(s) 76, 602, 623
BfrI CTTAAG 1 cut(s) 638
BglII AGATCT 1 cut(s) 286
BisI GCNGC 3 cut(s) 362, 381, 546
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 3 cut(s) 363, 382, 547
Bme1390I CCNGG 2 cut(s) 229, 605
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 229, 605
BmsI GCATC 3 cut(s) 449, 673, 696
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 874
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 890
Bse1I ACTGG 1 cut(s) 411
Bse21I CCTNAGG 1 cut(s) 770
Bse3DI GCAATG 3 cut(s) 41, 99, 723
BseBI CCWGG 2 cut(s) 229, 605
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 711
BseLI CCNNNNNNNGG 2 cut(s) 651, 890
BseMI GCAATG 3 cut(s) 41, 99, 723
BseMII CTCAG 2 cut(s) 260, 784
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 737, 836
BseXI GCAGC 3 cut(s) 373, 392, 557
BsgI GTGCAG 3 cut(s) 139, 564, 676
Bsh1236I CGCG 2 cut(s) 371, 385
BshFI GGCC 4 cut(s) 152, 295, 319, 750
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 555
BslFI GGGAC 2 cut(s) 323, 628
BslI CCNNNNNNNGG 2 cut(s) 651, 890
BsmAI GTCTC 1 cut(s) 874
BsmFI GGGAC 2 cut(s) 323, 628
BsnI GGCC 4 cut(s) 152, 295, 319, 750
Bso31I GGTCTC 1 cut(s) 874
Bsp1286I GDGCHC 2 cut(s) 555, 769
Bsp143I GATC 6 cut(s) 82, 139, 286, 496, 659, 754
Bsp1720I GCTNAGC 1 cut(s) 365
BspANI GGCC 4 cut(s) 152, 295, 319, 750
BspCNI CTCAG 2 cut(s) 261, 783
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 2 cut(s) 371, 385
BspLI GGNNCC 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 654
BspTI CTTAAG 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 874
BsrDI GCAATG 3 cut(s) 41, 99, 723
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 6 cut(s) 82, 139, 286, 496, 659, 754
BssSI CACGAG 1 cut(s) 862
Bst2BI CACGAG 1 cut(s) 862
Bst2UI CCWGG 2 cut(s) 229, 605
Bst6I CTCTTC 1 cut(s) 813
BstAFI CTTAAG 1 cut(s) 638
BstC8I GCNNGC 5 cut(s) 48, 154, 373, 450, 804
BstDEI CTNAG 5 cut(s) 269, 290, 365, 500, 770
BstF5I GGATG 1 cut(s) 711
BstFNI CGCG 2 cut(s) 371, 385
BstH2I RGCGCY 3 cut(s) 76, 602, 623
BstHHI GCGC 6 cut(s) 75, 371, 385, 508, 601, 622
BstKTI GATC 6 cut(s) 85, 142, 289, 499, 662, 757
BstMAI GTCTC 1 cut(s) 874
BstMBI GATC 6 cut(s) 82, 139, 286, 496, 659, 754
BstMWI GCNNNNNNNGC 5 cut(s) 325, 377, 545, 607, 628
BstNI CCWGG 2 cut(s) 229, 605
BstSCI CCNGG 2 cut(s) 227, 603
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 2 cut(s) 371, 385
BstV1I GCAGC 3 cut(s) 373, 392, 557
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 286, 659
BstYI RGATCY 2 cut(s) 286, 659
Bsu15I ATCGAT 1 cut(s) 336
Bsu36I CCTNAGG 1 cut(s) 770
BsuRI GGCC 4 cut(s) 152, 295, 319, 750
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 711
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 912
Cac8I GCNNGC 5 cut(s) 48, 154, 373, 450, 804
CfoI GCGC 6 cut(s) 75, 371, 385, 508, 601, 622
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 2 cut(s) 190, 830
Csp6I GTAC 1 cut(s) 533
CviAII CATG 1 cut(s) 137
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 5 cut(s) 269, 290, 365, 500, 770
DpnI GATC 6 cut(s) 84, 141, 288, 498, 661, 756
DpnII GATC 6 cut(s) 82, 139, 286, 496, 659, 754
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Eco147I AGGCCT 3 cut(s) 152, 319, 750
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 874
Eco32I GATATC 1 cut(s) 828
Eco57I CTGAAG 1 cut(s) 841
Eco81I CCTNAGG 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 227, 603
EcoRV GATATC 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 769
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 87, 138, 209, 404, 931
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FaqI GGGAC 2 cut(s) 323, 628
FatI CATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 362, 381, 546
FokI GGATG 1 cut(s) 718
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 3 cut(s) 362, 381, 546
FspBI CTAG 1 cut(s) 395
GlaI GCGC 6 cut(s) 74, 370, 384, 507, 600, 621
GluI GCNGC 3 cut(s) 362, 381, 546
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 3 cut(s) 76, 602, 623
HaeIII GGCC 4 cut(s) 152, 295, 319, 750
HgaI GACGC 2 cut(s) 190, 830
HhaI GCGC 6 cut(s) 75, 371, 385, 508, 601, 622
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 6 cut(s) 73, 369, 383, 506, 599, 620
HinP1I GCGC 6 cut(s) 73, 369, 383, 506, 599, 620
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 2 cut(s) 232, 583
Hpy188I TCNGA 4 cut(s) 66, 306, 445, 628
Hpy188III TCNNGA 2 cut(s) 464, 743
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 421, 685, 740
HpyF10VI GCNNNNNNNGC 5 cut(s) 325, 377, 545, 607, 628
HpyF3I CTNAG 5 cut(s) 269, 290, 365, 500, 770
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 6 cut(s) 73, 369, 383, 506, 599, 620
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 6 cut(s) 82, 139, 286, 496, 659, 754
LmnI GCTCC 5 cut(s) 325, 606, 607, 628, 838
Lsp1109I GCAGC 3 cut(s) 373, 392, 557
LweI GCATC 3 cut(s) 449, 673, 696
MaeI CTAG 1 cut(s) 395
MalI GATC 6 cut(s) 84, 141, 288, 498, 661, 756
MboI GATC 6 cut(s) 82, 139, 286, 496, 659, 754
MboII GAAGA 6 cut(s) 45, 92, 190, 574, 830, 898
MflI RGATCY 2 cut(s) 286, 659
MhlI GDGCHC 2 cut(s) 555, 769
MluCI AATT 5 cut(s) 9, 399, 467, 896, 918
MseI TTAA 4 cut(s) 222, 639, 665, 678
MslI CAYNNNNRTG 1 cut(s) 492
MspCI CTTAAG 1 cut(s) 638
MspR9I CCNGG 2 cut(s) 229, 605
MvaI CCWGG 2 cut(s) 229, 605
MvnI CGCG 2 cut(s) 371, 385
MwoI GCNNNNNNNGC 5 cut(s) 325, 377, 545, 607, 628
NdeII GATC 6 cut(s) 82, 139, 286, 496, 659, 754
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 327
NmeAIII GCCGAG 1 cut(s) 692
PceI AGGCCT 3 cut(s) 152, 319, 750
PfeI GAWTC 2 cut(s) 232, 583
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 3 cut(s) 363, 382, 547
Psp6I CCWGG 2 cut(s) 227, 603
PspGI CCWGG 2 cut(s) 227, 603
PspN4I GGNNCC 1 cut(s) 327
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 2 cut(s) 286, 659
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 222, 639, 665, 678
SatI GCNGC 3 cut(s) 362, 381, 546
Sau3AI GATC 6 cut(s) 82, 139, 286, 496, 659, 754
ScrFI CCNGG 2 cut(s) 229, 605
SduI GDGCHC 2 cut(s) 555, 769
SfaNI GCATC 3 cut(s) 449, 673, 696
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 5 cut(s) 9, 399, 467, 896, 918
SseBI AGGCCT 3 cut(s) 152, 319, 750
SspMI CTAG 1 cut(s) 395
StuI AGGCCT 3 cut(s) 152, 319, 750
StyD4I CCNGG 2 cut(s) 227, 603
TaqI TCGA 5 cut(s) 13, 213, 336, 735, 757
TasI AATT 5 cut(s) 9, 399, 467, 896, 918
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 2 cut(s) 232, 583
Tru1I TTAA 4 cut(s) 222, 639, 665, 678
Tru9I TTAA 4 cut(s) 222, 639, 665, 678
TscAI CASTG 2 cut(s) 39, 919
TseI GCWGC 3 cut(s) 361, 380, 545
TspDTI ATGAA 2 cut(s) 12, 17
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 2 cut(s) 39, 919
Vha464I CTTAAG 1 cut(s) 638
XapI RAATTY 3 cut(s) 9, 467, 896
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.