AT4G10300

Ethanolamine utilisation protein EutQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016005
Physical Location & Seq
Forward (+)
6384451 .. 6386239
1789 bp
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UTR
Exon/CDS
Intron
AT4G10300.1

Sequence Viewer

Length: 405 bp
ATGGGCTGCATCGGTGTTGTGAATGTAACAAGCATAAATCCATATCTCACAAGAAGATCAAACAAACCCTACAATTCAAGAAGACCATCATCCATGGCTGCTGCGATTAGAGCTGAGTCTACTGAGAAATTAGGGATTACAATTGAAAAGAATCCTCCTGAGTCCAAACTAACCCAACTCGGTGTTCGTAGTTGGCCCAAGTGGGGTTGTCCTCCAAGCAAGTTTCCATGGACTTACAGTGCAAAGGAGACTTGTTATTTACTACAAGGAAAAGTGAAAGTGTACCCTAATGGATCCGATGAAGGCGTAGAGATCGAAGCAGGCGACTTTGTTGTTTTCCCTAAAGGAATGAGTTGCACTTGGGATGTCTCTGTTGCTGTTGATAAACATTACCAATTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

134

Amino Acids

14.94

Weight (kDa)

8.9

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 58 - 131 5.3e-31 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10300
fragaria_vesca FvH4_2g00100 FvH4_2g00100
malus_domestica MD00G1089100.v1.1
prunus_persica Prupe.8G000800_v2.0.a1
pyrus_communis pycom215g00110
rosa_chinensis RchiOBHm_Chr6g0249351
rosa_laevigata RLG00000015589
rosa_roxburghii Rroxscaffold_7G00217820
rosa_rugosa Rorug05G0491000.1
rosa_samantha Rh6AG001400 Rh6BG008800 Rh6CG000500 Rh6DG000400
rosa_wichuraiana Rw6G000200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AclWI GGATC 2 cut(s) 288, 301
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 78, 146
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 242, 373
AlwI GGATC 2 cut(s) 288, 301
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 6, 98, 101
AspS9I GGNCC 1 cut(s) 195
BamHI GGATCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 85, 88
BccI CCATC 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 242, 373
BisI GCNGC 3 cut(s) 7, 99, 102
BlsI GCNGC 3 cut(s) 8, 100, 103
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 93, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 93, 227
BseGI GGATG 2 cut(s) 89, 370
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 3 cut(s) 105, 114, 150
BseXI GCAGC 2 cut(s) 85, 88
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 242, 373
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 56, 293, 312
Bsp19I CCATGG 2 cut(s) 93, 227
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 106, 115, 151
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 2 cut(s) 288, 301
BssECI CCNNGG 2 cut(s) 93, 227
BssMI GATC 3 cut(s) 56, 293, 312
BssT1I CCWWGG 2 cut(s) 93, 227
Bst4CI ACNGT 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 114, 123, 159
BstDSI CCRYGG 2 cut(s) 93, 227
BstF5I GGATG 2 cut(s) 89, 370
BstKTI GATC 3 cut(s) 59, 296, 315
BstMAI GTCTC 2 cut(s) 242, 373
BstMBI GATC 3 cut(s) 56, 293, 312
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 85, 88
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 2 cut(s) 93, 227
BtsCI GGATG 2 cut(s) 89, 370
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 283
CviAII CATG 2 cut(s) 94, 228
CviJI RGCY 4 cut(s) 6, 98, 113, 196
CviKI_1 RGCY 4 cut(s) 6, 98, 113, 196
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 114, 123, 159
DpnI GATC 3 cut(s) 58, 295, 314
DpnII GATC 3 cut(s) 56, 293, 312
Eco130I CCWWGG 2 cut(s) 93, 227
EcoT14I CCWWGG 2 cut(s) 93, 227
ErhI CCWWGG 2 cut(s) 93, 227
FaeI CATG 2 cut(s) 97, 231
FaiI YATR 4 cut(s) 35, 43, 95, 229
FatI CATG 2 cut(s) 93, 227
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 3 cut(s) 7, 99, 102
FokI GGATG 2 cut(s) 76, 377
Fsp4HI GCNGC 3 cut(s) 7, 99, 102
GluI GCNGC 3 cut(s) 7, 99, 102
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 2 cut(s) 97, 231
HinfI GANTC 3 cut(s) 116, 151, 161
Hpy166II GTNNAC 2 cut(s) 120, 283
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 78, 158
Hpy8I GTNNAC 2 cut(s) 120, 283
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 9, 242, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 114, 123, 159
Hsp92II CATG 2 cut(s) 97, 231
Kzo9I GATC 3 cut(s) 56, 293, 312
LpnPI CCDG 2 cut(s) 171, 306
Lsp1109I GCAGC 2 cut(s) 85, 88
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 25
MalI GATC 3 cut(s) 58, 295, 314
MboI GATC 3 cut(s) 56, 293, 312
MboII GAAGA 2 cut(s) 66, 93
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 293
MluCI AATT 4 cut(s) 73, 128, 141, 395
MlyI GAGTC 2 cut(s) 125, 170
MnlI CCTC 2 cut(s) 165, 222
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 110
NcoI CCATGG 2 cut(s) 93, 227
NdeII GATC 3 cut(s) 56, 293, 312
NlaIII CATG 2 cut(s) 97, 231
NlaIV GGNNCC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 8, 100, 103
PleI GAGTC 2 cut(s) 124, 169
PpsI GAGTC 2 cut(s) 124, 169
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SatI GCNGC 3 cut(s) 7, 99, 102
Sau3AI GATC 3 cut(s) 56, 293, 312
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 125, 170
SetI ASST 1 cut(s) 115
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 4 cut(s) 73, 128, 141, 395
StyI CCWWGG 2 cut(s) 93, 227
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 315, 399
TasI AATT 4 cut(s) 73, 128, 141, 395
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 1 cut(s) 244
TseI GCWGC 3 cut(s) 6, 98, 101
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.